Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

48338777 .. 48359797

Gene Structure 21021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG267200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTGGACGATGATGGGTAGCAGCAGTGGTTGTAGAGACCCTAATATTGGGGATCTGCCTGAGTACTCGATCAAAGCTGCATATCCTCAGCCTGCAGTACTACTCACTCCAAAGCTTAGCTCTACTTCCAACATGACCAAAATCCCTTTGTTACCATTCAACCACCACCATCAGATGGTTCCAGTGACGTCGAATGAGCAAGGCAGAAATGGCAGTGATTGTTCTTATAGTCATAAACAACCGGCAGCTACAGATCCTCCTCGAAGTTCCCGATGGACTCCAACACCGGAGCAGATAGTGCATCTGGAAGAGCTGTATCGATCTGGGATCAAGACGCCGACGGCCAAACAAATCCGACAGGTGACTGCACGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATATATTCTACTGGTTTCAGAACCGCCGAGCCAGGGAGAGGCACAAGACACGCCGTGAACTCATGTCCATGCATCAGTCCGACTCTAAACAACAACAACAACAAACTTTGACTAACAACACAATTAGCTGTCTCCGAGAAAAAGAATCTGCAGGAGTTGACTTTGTTCGTTGTTTTGAAGTTGAGCAGCAGAATAGACGGACATTACCAAGCTTCACTCTTCTTACCGATCAGAGGCTGAAAAGGATGAAGGGTCGCCTGAAAGAGATGAGTGAGTGGTGCAGGCAGCTCATGCGTGAAGAAGATTTGGAACAAGATGAAGAACTTGAAATTGGAGTTACTCAAGATATTCCTGACATTGATGCCACTCAAGATATTCCCAATGATACTTCTACTGGGCCTCCGCATAGAGAGAGGAAGCTTCCACCTTTCAAATCAAACTCGGAGAAATCAAGGTTTCCTATTGCTTCATTTGATTTGGGTCGTCAAGTATCAAATAAGTTATTGTTCCTTGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

307

Amino Acids

35.47

Weight (kDa)

9.28

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	88 - 149	2.3e-13	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	175
AciI	CCGC	2 cut(s)	427, 806
AclWI	GGATC	3 cut(s)	60, 248, 335
AcoI	YGGCCR	1 cut(s)	342
AcyI	GRCGYC	2 cut(s)	188, 335
AdeI	CACNNNGTG	1 cut(s)	458
AfaI	GTAC	2 cut(s)	65, 99
AfiI	CCNNNNNNNGG	5 cut(s)	47, 175, 436, 441, 636
AgsI	TTSAA	5 cut(s)	160, 395, 581, 731, 835
AjnI	CCWGG	1 cut(s)	434
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
AluBI	AGCT	9 cut(s)	77, 115, 120, 248, 313, 531, 615, 691, 823
AluI	AGCT	9 cut(s)	77, 115, 120, 248, 313, 531, 615, 691, 823
Alw26I	GTCTC	2 cut(s)	30, 539
AlwI	GGATC	3 cut(s)	60, 248, 335
AlwNI	CAGNNNCTG	1 cut(s)	640
AoxI	GGCC	2 cut(s)	342, 800
ApeKI	GCWGC	5 cut(s)	21, 77, 245, 589, 688
Asp700I	GAANNNNTTC	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	800
AsuHPI	GGTGA	1 cut(s)	373
AsuII	TTCGAA	1 cut(s)	376
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	5 cut(s)	33, 64, 257, 601, 700
BccI	CCATC	4 cut(s)	7, 169, 177, 267
BceAI	ACGGC	3 cut(s)	357, 386, 441
BciT130I	CCWGG	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	30, 539
BfmI	CTRYAG	3 cut(s)	93, 249, 552
BisI	GCNGC	5 cut(s)	22, 78, 246, 590, 689
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	5 cut(s)	23, 79, 247, 591, 690
BmcAI	AGTACT	2 cut(s)	65, 99
Bme1390I	CCNGG	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	436
BmrI	ACTGGG	1 cut(s)	807
BmsI	GCATC	3 cut(s)	310, 484, 754
BmuI	ACTGGG	1 cut(s)	807
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu1102I	GCTNAGC	1 cut(s)	116
Bpu14I	TTCGAA	1 cut(s)	376
BpuEI	CTTGAG	2 cut(s)	729, 756
Bsa29I	ATCGAT	1 cut(s)	319
BsaHI	GRCGYC	2 cut(s)	188, 335
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	435, 913
BsaWI	WCCGGW	1 cut(s)	286
BsaXI	ACNNNNNCTCC	4 cut(s)	241, 271, 787, 817
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 175, 436, 441, 636
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	3 cut(s)	182, 419, 802
BseBI	CCWGG	1 cut(s)	436
BseCI	ATCGAT	1 cut(s)	319
BseDI	CCNNGG	2 cut(s)	435, 913
BseGI	GGATG	1 cut(s)	654
BseLI	CCNNNNNNNGG	5 cut(s)	47, 175, 436, 441, 636
BseMII	CTCAG	2 cut(s)	51, 101
BseNI	ACTGG	3 cut(s)	182, 419, 802
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	5 cut(s)	33, 64, 257, 601, 700
BsgI	GTGCAG	2 cut(s)	351, 703
BshFI	GGCC	2 cut(s)	344, 802
BshVI	ATCGAT	1 cut(s)	319
BsiSI	CCGG	2 cut(s)	242, 287
BslI	CCNNNNNNNGG	5 cut(s)	47, 175, 436, 441, 636
BsmAI	GTCTC	2 cut(s)	30, 539
BsnI	GGCC	2 cut(s)	344, 802
Bso31I	GGTCTC	1 cut(s)	30
Bsp119I	TTCGAA	1 cut(s)	376
Bsp143I	GATC	6 cut(s)	52, 69, 253, 320, 327, 631
Bsp1720I	GCTNAGC	1 cut(s)	116
BspACI	CCGC	2 cut(s)	427, 806
BspANI	GGCC	2 cut(s)	344, 802
BspCNI	CTCAG	2 cut(s)	52, 100
BspDI	ATCGAT	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	2 cut(s)	97, 556
BspPI	GGATC	3 cut(s)	60, 248, 335
BspQI	GCTCTTC	1 cut(s)	303
BspT104I	TTCGAA	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	3 cut(s)	182, 419, 802
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	435, 913
BssMI	GATC	6 cut(s)	52, 69, 253, 320, 327, 631
BssNI	GRCGYC	2 cut(s)	188, 335
BssT1I	CCWWGG	1 cut(s)	913
Bst2UI	CCWGG	1 cut(s)	436
Bst6I	CTCTTC	2 cut(s)	303, 627
BstACI	GRCGYC	2 cut(s)	188, 335
BstAPI	GCANNNNNTGC	2 cut(s)	298, 694
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	93, 686
BstDEI	CTNAG	3 cut(s)	60, 87, 116
BstF5I	GGATG	1 cut(s)	654
BstKTI	GATC	6 cut(s)	55, 72, 256, 323, 330, 634
BstMAI	GTCTC	2 cut(s)	30, 539
BstMBI	GATC	6 cut(s)	52, 69, 253, 320, 327, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	210, 298, 694
BstNI	CCWGG	1 cut(s)	436
BstSCI	CCNGG	1 cut(s)	434
BstSFI	CTRYAG	3 cut(s)	93, 249, 552
BstV1I	GCAGC	5 cut(s)	33, 64, 257, 601, 700
BstX2I	RGATCY	2 cut(s)	52, 253
BstYI	RGATCY	2 cut(s)	52, 253
Bsu15I	ATCGAT	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	344, 802
BsuTUI	ATCGAT	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	654
BtsI	GCAGTG	2 cut(s)	31, 220
BtsIMutI	CAGTG	3 cut(s)	31, 189, 220
Cac8I	GCNNGC	2 cut(s)	93, 686
CaiI	CAGNNNCTG	1 cut(s)	640
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	800
ClaI	ATCGAT	1 cut(s)	319
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	64, 98
CviAII	CATG	4 cut(s)	133, 466, 472, 694
CviQI	GTAC	2 cut(s)	64, 98
DdeI	CTNAG	3 cut(s)	60, 87, 116
DpnI	GATC	6 cut(s)	54, 71, 255, 322, 329, 633
DpnII	GATC	6 cut(s)	52, 69, 253, 320, 327, 631
DraIII	CACNNNGTG	1 cut(s)	458
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	303, 627
EarI	CTCTTC	2 cut(s)	303, 627
Eco130I	CCWWGG	1 cut(s)	913
Eco31I	GGTCTC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	913
EcoT22I	ATGCAT	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	913
FaeI	CATG	4 cut(s)	136, 469, 475, 697
FatI	CATG	4 cut(s)	132, 465, 471, 693
Fnu4HI	GCNGC	5 cut(s)	22, 78, 246, 590, 689
FokI	GGATG	1 cut(s)	661
Fsp4HI	GCNGC	5 cut(s)	22, 78, 246, 590, 689
GluI	GCNGC	5 cut(s)	22, 78, 246, 590, 689
HaeIII	GGCC	2 cut(s)	344, 802
HapII	CCGG	2 cut(s)	242, 287
HgaI	GACGC	1 cut(s)	343
Hin1I	GRCGYC	2 cut(s)	188, 335
Hin1II	CATG	4 cut(s)	136, 469, 475, 697
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	3 cut(s)	113, 613, 821
HinfI	GANTC	3 cut(s)	277, 485, 548
HpaII	CCGG	2 cut(s)	242, 287
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	3 cut(s)	6, 461, 562
Hpy188I	TCNGA	7 cut(s)	174, 356, 423, 484, 539, 636, 847
Hpy188III	TCNNGA	6 cut(s)	270, 305, 331, 746, 755, 773
Hpy8I	GTNNAC	3 cut(s)	6, 461, 562
Hpy99I	CGWCG	2 cut(s)	193, 343
HpyAV	CCTTC	2 cut(s)	389, 646
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	7 cut(s)	80, 95, 301, 368, 475, 554, 684
HpyF10VI	GCNNNNNNNGC	3 cut(s)	210, 298, 694
HpyF3I	CTNAG	3 cut(s)	60, 87, 116
HpySE526I	ACGT	1 cut(s)	188
Hsp92I	GRCGYC	2 cut(s)	188, 335
Hsp92II	CATG	4 cut(s)	136, 469, 475, 697
Kzo9I	GATC	6 cut(s)	52, 69, 253, 320, 327, 631
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	5 cut(s)	33, 64, 257, 601, 700
LweI	GCATC	3 cut(s)	310, 484, 754
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	4 cut(s)	150, 184, 361, 739
MalI	GATC	6 cut(s)	54, 71, 255, 322, 329, 633
MboI	GATC	6 cut(s)	52, 69, 253, 320, 327, 631
MboII	GAAGA	5 cut(s)	320, 614, 713, 716, 734
MflI	RGATCY	2 cut(s)	52, 253
MluCI	AATT	3 cut(s)	525, 732, 919
MlyI	GAGTC	2 cut(s)	271, 479
MmeI	TCCRAC	4 cut(s)	153, 305, 379, 507
MnlI	CCTC	8 cut(s)	96, 267, 270, 381, 435, 630, 810, 813
Mph1103I	ATGCAT	1 cut(s)	477
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	1 cut(s)	922
MslI	CAYNNNNRTG	1 cut(s)	470
MspI	CCGG	2 cut(s)	242, 287
MspR9I	CCNGG	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	436
MwoI	GCNNNNNNNGC	3 cut(s)	210, 298, 694
NdeII	GATC	6 cut(s)	52, 69, 253, 320, 327, 631
NlaIII	CATG	4 cut(s)	136, 469, 475, 697
NlaIV	GGNNCC	1 cut(s)	180
NmeAIII	GCCGAG	1 cut(s)	455
NmuCI	GTSAC	2 cut(s)	184, 361
NsiI	ATGCAT	1 cut(s)	477
NspV	TTCGAA	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	548
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	5 cut(s)	23, 79, 247, 591, 690
PleI	GAGTC	2 cut(s)	271, 479
PpsI	GAGTC	2 cut(s)	271, 479
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	800
PstI	CTGCAG	2 cut(s)	97, 556
PstNI	CAGNNNCTG	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	52, 253
RsaI	GTAC	2 cut(s)	65, 99
RsaNI	GTAC	2 cut(s)	64, 98
RseI	CAYNNNNRTG	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	922
SatI	GCNGC	5 cut(s)	22, 78, 246, 590, 689
Sau3AI	GATC	6 cut(s)	52, 69, 253, 320, 327, 631
Sau96I	GGNCC	1 cut(s)	800
ScaI	AGTACT	2 cut(s)	65, 99
SchI	GAGTC	2 cut(s)	271, 479
ScrFI	CCNGG	1 cut(s)	436
SfaNI	GCATC	3 cut(s)	310, 484, 754
SfcI	CTRYAG	3 cut(s)	93, 249, 552
SfuI	TTCGAA	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	2 cut(s)	744, 771
SmoI	CTYRAG	2 cut(s)	744, 771
Sse9I	AATT	3 cut(s)	525, 732, 919
SsiI	CCGC	2 cut(s)	427, 806
SspI	AATATT	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	913
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	5 cut(s)	68, 191, 262, 319, 376
TasI	AATT	3 cut(s)	525, 732, 919
TatI	WGTACW	2 cut(s)	63, 97
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	1 cut(s)	922
Tru9I	TTAA	1 cut(s)	922
TscAI	CASTG	3 cut(s)	31, 189, 220
TseFI	GTSAC	2 cut(s)	184, 361
TseI	GCWGC	5 cut(s)	21, 77, 245, 589, 688
Tsp45I	GTSAC	2 cut(s)	184, 361
TspDTI	ATGAA	3 cut(s)	665, 735, 861
TspGWI	ACGGA	1 cut(s)	616
TspRI	CASTG	3 cut(s)	31, 189, 220
Van91I	CCANNNNNTGG	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	407
ZraI	GACGTC	1 cut(s)	189
ZrmI	AGTACT	2 cut(s)	65, 99
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.