Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

21549888 .. 21561340

Gene Structure 11453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0150700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGTAGACATGAGAGGAGGGTGGATGGCATAACAGCTTTGAAGAGGTTTGAGGGGTTTCAAAGATGGGAGCTTTTTTGTTTCAATGGCCAGAGCTTTTTGGGTCTGAAACGCAACCCAGCTGCACTCAACTGCGCCGTTTCTGACTCTCTCCGTGACTCCGTGTCTCCGTCTCCGCCGTTTCTGACTCTCTCCGTCCCCGACTCTCAGTCTCCCGTCTCCGAGTCTCCCGTCTCCGAGCTCCAGATTGGAGCTACTTTCATGGCCAGGCGGCCAGCAGAATCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

96

Amino Acids

10.64

Weight (kDa)

8.88

Isoelectric Point (pI)

101.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	7
AciI	CCGC	2 cut(s)	176, 271
AcoI	YGGCCR	3 cut(s)	88, 264, 272
AgsI	TTSAA	3 cut(s)	43, 62, 85
AhdI	GACNNNNNGTC	2 cut(s)	163, 208
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	6 cut(s)	38, 73, 96, 122, 241, 254
AluI	AGCT	6 cut(s)	38, 73, 96, 122, 241, 254
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	6 cut(s)	171, 177, 216, 223, 231, 238
AoxI	GGCC	3 cut(s)	88, 264, 272
ApeKI	GCWGC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	137
BalI	TGGCCA	2 cut(s)	90, 266
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	2 cut(s)	20, 60
BceAI	ACGGC	2 cut(s)	122, 163
BciT130I	CCWGG	1 cut(s)	268
BcoDI	GTCTC	6 cut(s)	171, 177, 216, 223, 231, 238
BfaI	CTAG	1 cut(s)	285
BisI	GCNGC	2 cut(s)	123, 272
BlsI	GCNGC	2 cut(s)	124, 273
Bme1390I	CCNGG	1 cut(s)	268
BmeRI	GACNNNNNGTC	2 cut(s)	163, 208
BmrFI	CCNGG	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	109
BseYI	CCCAGC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	3 cut(s)	90, 266, 274
BsiHKAI	GWGCWC	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	182
BsmAI	GTCTC	6 cut(s)	171, 177, 216, 223, 231, 238
BsmBI	CGTCTC	3 cut(s)	177, 223, 238
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	3 cut(s)	90, 266, 274
Bsp1286I	GDGCHC	1 cut(s)	243
BspACI	CCGC	2 cut(s)	176, 271
BspANI	GGCC	3 cut(s)	90, 266, 274
BspCNI	CTCAG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	137
BstMAI	GTCTC	6 cut(s)	171, 177, 216, 223, 231, 238
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	109
BsuRI	GGCC	3 cut(s)	90, 266, 274
BtsCI	GGATG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	137
CviAII	CATG	2 cut(s)	11, 262
CviJI	RGCY	9 cut(s)	38, 73, 90, 96, 122, 241, 254, 266, 274
CviKI_1	RGCY	9 cut(s)	38, 73, 90, 96, 122, 241, 254, 266, 274
DdeI	CTNAG	1 cut(s)	207
DriI	GACNNNNNGTC	2 cut(s)	163, 208
EaeI	YGGCCR	3 cut(s)	88, 264, 272
Eam1104I	CTCTTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	2 cut(s)	163, 208
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	243
Esp3I	CGTCTC	3 cut(s)	177, 223, 238
FaeI	CATG	2 cut(s)	14, 265
FaiI	YATR	3 cut(s)	12, 32, 263
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	2 cut(s)	10, 261
FblI	GTMKAC	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	123, 272
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	123, 272
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	2 cut(s)	123, 272
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	3 cut(s)	90, 266, 274
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	14, 265
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	6 cut(s)	146, 158, 187, 203, 224, 281
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	5 cut(s)	108, 145, 186, 223, 238
Hpy188III	TCNNGA	2 cut(s)	244, 285
Hpy8I	GTNNAC	1 cut(s)	8
HpyCH4V	TGCA	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	14, 265
HspAI	GCGC	1 cut(s)	135
LmnI	GCTCC	3 cut(s)	70, 246, 251
LpnPI	CCDG	5 cut(s)	104, 132, 253, 257, 280
Lsp1109I	GCAGC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	155
MboII	GAAGA	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	2 cut(s)	90, 266
MluNI	TGGCCA	2 cut(s)	90, 266
MlyI	GAGTC	5 cut(s)	140, 152, 181, 197, 233
MnlI	CCTC	4 cut(s)	9, 12, 39, 46
Mox20I	TGGCCA	2 cut(s)	90, 266
MscI	TGGCCA	2 cut(s)	90, 266
Msp20I	TGGCCA	2 cut(s)	90, 266
MspA1I	CMGCKG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	268
NlaIII	CATG	2 cut(s)	14, 265
NmuCI	GTSAC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	124, 273
PleI	GAGTC	5 cut(s)	140, 152, 181, 197, 232
PpsI	GAGTC	5 cut(s)	140, 152, 181, 197, 232
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	122
SacI	GAGCTC	1 cut(s)	243
SatI	GCNGC	2 cut(s)	123, 272
SchI	GAGTC	5 cut(s)	140, 152, 181, 197, 233
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	7 cut(s)	40, 50, 75, 98, 124, 243, 256
SsiI	CCGC	2 cut(s)	176, 271
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	266
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	250
TspGWI	ACGGA	4 cut(s)	143, 151, 159, 184
XbaI	TCTAGA	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	7
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.