Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001847

Physical Location & Seq

Genomic Coordinates Reverse (-)

44846537 .. 44849556

Gene Structure 3020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G022800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGATGGGTAGCAGCGGTGGTTGTAAAGACCGTAATAATAGGGCTCTGCCTGAGTACTTCTCGATCAAAGCTGCATATCCTCAGCCTGCAGTACTACTCACTCCAAAGCTTAGCTGTACTTCCAACATGACCCAAATCCCTTTGTTACCATTCAACCACCACCATCAGATGGTTCCAGTGACGTCGAATGATAAACAACCGGCAGCTGCAGCTCCTCCTCGAAGTTCCCGATGGACTCCAACCCCGGAGCAGATAATGCATCTGGAAGAGCTGTATCGATCTGGGGTCAAGACACCGACGGCCGAACAAATCCGACAGGTGGCTGCACGGCTTCGAAACTATGGGAGGGTTGAAGGCAAGAATGTATTCTACTGGTTTCAGAACCGCCGAGCCAGGGAGAGGCAGAAGACACGCCGTGAACTCATGTCCATGCATCAGTCTGACTCTAAACAACAACAACAACAAACTTTGACTAAGAACACAATTAGCGGTCTCCGGGACAAAGAATCTGCAGGAGCTGACTTTCTTCGTTGTTTTGAAGTTGAGCAGCAGAATAGGCGAACACTACCAAGCTTCACTCTTCTTACCGATCAGAAATCATCTTCAGTACTACAAGAGAGGATGATGAGCATGGTGAAAAGCAATTCCTCCGGGCTACTTATGGAACACATCGATTCACCTGGACTGACCTCAAACATAAACACGTCAGCTACATTAGTTTACAGAAAGCTCTTGGACTTTCATCACTATTATGATTACGACTACGGTATGGCACTATTGACTGCACCCAATATTAACAAAGAAGAAGAAGAAGAAAGCAGAGAAACTCAAACTCTTAAGCTCTTTCCACTCGAGACCGACAATCTTAAGGGTGCTAAGGATACCAAATTACCTATGAGCAGAACCACACGCACGGACACTACTTCAAATTTCATGGCAGACCAATATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

317

Amino Acids

36.39

Weight (kDa)

9.3

Isoelectric Point (pI)

67.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	74 - 135	6.4e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001847)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32650 FvH4_4g32660 FvH4_5g02150 FvH4_5g02150
rosa_chinensis	RchiOBHm_Chr2g0140271 RchiOBHm_Chr4g0441531 RchiOBHm_Chr4g0441541 RchiOBHm_Chr6g0282911 RchiOBHm_Chr6g0283101
rosa_laevigata	RLG00000006085 RLG00000006087 RLG00000012846 RLG00000012849 RLG00000012850 RLG00000012852 RLG00000012853 RLG00000019859
rosa_multiflora	Rmu_sc0000159.1_g000025 Rmu_sc0000159.1_g000041 Rmu_sc0000159.1_g000052 Rmu_sc0000353.1_g000028 Rmu_sc0005446.1_g000015 Rmu_sc0012670.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104940 Rroxscaffold_5G00382380 Rroxscaffold_5G00382400
rosa_rugosa	Rorug02G0361700 Rorug04G0334600 Rorug04G0334700 Rorug06G0150700 Rorug06G0151300 Rorug06G0151300
rosa_samantha	Rh2AG412600 Rh2BG423100 Rh2CG398800 Rh2DG432200 Rh4AG385900 Rh4BG400200 Rh4DG392700 Rh4DG392800 Rh6AG264100 Rh6BG267200 Rh6CG266000
rosa_wichuraiana	Rw2G033820 Rw4G033330 Rw6G022800 Rw6G022850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	169
AciI	CCGC	3 cut(s)	15, 385, 489
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	928
AcuI	CTGAAG	1 cut(s)	588
AcyI	GRCGYC	1 cut(s)	182
AdeI	CACNNNGTG	1 cut(s)	416
AfaI	GTAC	4 cut(s)	56, 93, 118, 609
AfiI	CCNNNNNNNGG	4 cut(s)	169, 319, 394, 399
AflII	CTTAAG	2 cut(s)	836, 866
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	4 cut(s)	154, 353, 539, 927
AjiI	CACGTC	1 cut(s)	705
AjnI	CCWGG	2 cut(s)	392, 679
Alw26I	GTCTC	2 cut(s)	497, 848
AlwNI	CAGNNNCTG	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	7 cut(s)	12, 71, 203, 206, 209, 323, 547
ApoI	RAATTY	1 cut(s)	928
Asp700I	GAANNNNTTC	1 cut(s)	365
AsuC2I	CCSGG	3 cut(s)	245, 497, 652
AsuHPI	GGTGA	2 cut(s)	646, 669
AsuII	TTCGAA	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	413
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	7 cut(s)	24, 58, 193, 215, 221, 310, 559
BccI	CCATC	3 cut(s)	163, 171, 225
BceAI	ACGGC	3 cut(s)	315, 344, 399
BciT130I	CCWGG	2 cut(s)	394, 681
BciVI	GTATCC	1 cut(s)	874
BcnI	CCSGG	3 cut(s)	245, 497, 652
BcoDI	GTCTC	2 cut(s)	497, 848
BfmI	CTRYAG	3 cut(s)	87, 207, 510
BfrI	CTTAAG	2 cut(s)	836, 866
BfuI	GTATCC	1 cut(s)	874
BisI	GCNGC	7 cut(s)	13, 72, 204, 207, 210, 324, 548
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	7 cut(s)	14, 73, 205, 208, 211, 325, 549
BmcAI	AGTACT	3 cut(s)	56, 93, 609
Bme1390I	CCNGG	5 cut(s)	245, 394, 497, 652, 681
BmeT110I	CYCGRG	1 cut(s)	851
BmgBI	CACGTC	1 cut(s)	705
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	5 cut(s)	245, 394, 497, 652, 681
BmsI	GCATC	2 cut(s)	268, 442
BpiI	GAAGAC	1 cut(s)	413
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
Bpu10I	CCTNAGC	2 cut(s)	81, 876
Bpu1102I	GCTNAGC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	334
BpuMI	CCSGG	3 cut(s)	245, 497, 652
Bsa29I	ATCGAT	2 cut(s)	277, 672
BsaHI	GRCGYC	1 cut(s)	182
BsaI	GGTCTC	2 cut(s)	497, 848
BsaJI	CCNNGG	2 cut(s)	243, 393
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 319, 394, 399
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	2 cut(s)	176, 377
BseBI	CCWGG	2 cut(s)	394, 681
BseCI	ATCGAT	2 cut(s)	277, 672
BseDI	CCNNGG	2 cut(s)	243, 393
BseGI	GGATG	1 cut(s)	627
BseLI	CCNNNNNNNGG	4 cut(s)	169, 319, 394, 399
BseMII	CTCAG	2 cut(s)	42, 95
BseNI	ACTGG	2 cut(s)	176, 377
BseRI	GAGGAG	2 cut(s)	204, 207
BseX3I	CGGCCG	1 cut(s)	300
BseXI	GCAGC	7 cut(s)	24, 58, 193, 215, 221, 310, 559
BsgI	GTGCAG	2 cut(s)	309, 768
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	302
BshVI	ATCGAT	2 cut(s)	277, 672
BsiEI	CGRYCG	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	4 cut(s)	200, 245, 496, 651
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	4 cut(s)	169, 319, 394, 399
BsmAI	GTCTC	2 cut(s)	497, 848
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	302
Bso31I	GGTCTC	2 cut(s)	497, 848
BsoBI	CYCGRG	1 cut(s)	851
Bsp119I	TTCGAA	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	63, 278, 589
Bsp1720I	GCTNAGC	1 cut(s)	110
BspACI	CCGC	3 cut(s)	15, 385, 489
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	2 cut(s)	43, 94
BspDI	ATCGAT	2 cut(s)	277, 672
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	3 cut(s)	91, 211, 514
BspQI	GCTCTTC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	334
BspTI	CTTAAG	2 cut(s)	836, 866
BspTNI	GGTCTC	2 cut(s)	497, 848
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	176, 377
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	243, 393
BssMI	GATC	3 cut(s)	63, 278, 589
BssNI	GRCGYC	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	394, 681
Bst4CI	ACNGT	2 cut(s)	32, 767
Bst6I	CTCTTC	2 cut(s)	261, 585
BstACI	GRCGYC	1 cut(s)	182
BstAFI	CTTAAG	2 cut(s)	836, 866
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstBI	TTCGAA	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	5 cut(s)	51, 81, 110, 474, 876
BstF5I	GGATG	1 cut(s)	627
BstKTI	GATC	3 cut(s)	66, 281, 592
BstMAI	GTCTC	2 cut(s)	497, 848
BstMBI	GATC	3 cut(s)	63, 278, 589
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 256, 556
BstNI	CCWGG	2 cut(s)	394, 681
BstSCI	CCNGG	5 cut(s)	243, 392, 495, 650, 679
BstSFI	CTRYAG	3 cut(s)	87, 207, 510
BstV1I	GCAGC	7 cut(s)	24, 58, 193, 215, 221, 310, 559
BstV2I	GAAGAC	1 cut(s)	413
BstZI	CGGCCG	1 cut(s)	300
Bsu15I	ATCGAT	2 cut(s)	277, 672
BsuI	GTATCC	1 cut(s)	874
BsuRI	GGCC	1 cut(s)	302
BsuTUI	ATCGAT	2 cut(s)	277, 672
BtrI	CACGTC	1 cut(s)	705
BtsCI	GGATG	1 cut(s)	627
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	518
Cfr10I	RCCGGY	1 cut(s)	199
ClaI	ATCGAT	2 cut(s)	277, 672
Csp6I	GTAC	4 cut(s)	55, 92, 117, 608
CviAII	CATG	5 cut(s)	127, 424, 430, 631, 934
CviQI	GTAC	4 cut(s)	55, 92, 117, 608
DdeI	CTNAG	5 cut(s)	51, 81, 110, 474, 876
DpnI	GATC	3 cut(s)	65, 280, 591
DpnII	GATC	3 cut(s)	63, 278, 589
DraIII	CACNNNGTG	1 cut(s)	416
EaeI	YGGCCR	1 cut(s)	300
EagI	CGGCCG	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	261, 585
EarI	CTCTTC	2 cut(s)	261, 585
EclXI	CGGCCG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	2 cut(s)	497, 848
Eco52I	CGGCCG	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	588
Eco88I	CYCGRG	1 cut(s)	851
EcoRII	CCWGG	2 cut(s)	392, 679
EcoT22I	ATGCAT	2 cut(s)	261, 435
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	5 cut(s)	130, 427, 433, 634, 937
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	5 cut(s)	126, 423, 429, 630, 933
Fnu4HI	GCNGC	7 cut(s)	13, 72, 204, 207, 210, 324, 548
FokI	GGATG	1 cut(s)	634
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	7 cut(s)	13, 72, 204, 207, 210, 324, 548
GluI	GCNGC	7 cut(s)	13, 72, 204, 207, 210, 324, 548
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	4 cut(s)	200, 245, 496, 651
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	5 cut(s)	130, 427, 433, 634, 937
HindIII	AAGCTT	2 cut(s)	107, 571
HinfI	GANTC	4 cut(s)	235, 443, 506, 674
HpaII	CCGG	4 cut(s)	200, 245, 496, 651
HphI	GGTGA	2 cut(s)	646, 669
Hpy166II	GTNNAC	2 cut(s)	419, 721
Hpy188I	TCNGA	5 cut(s)	168, 314, 381, 442, 594
Hpy188III	TCNNGA	5 cut(s)	61, 228, 263, 289, 853
Hpy8I	GTNNAC	2 cut(s)	419, 721
Hpy99I	CGWCG	2 cut(s)	187, 301
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	2 cut(s)	32, 767
HpyCH4IV	ACGT	2 cut(s)	182, 704
HpyCH4V	TGCA	8 cut(s)	74, 89, 209, 259, 326, 433, 512, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 256, 556
HpyF3I	CTNAG	5 cut(s)	51, 81, 110, 474, 876
HpySE526I	ACGT	2 cut(s)	182, 704
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	5 cut(s)	130, 427, 433, 634, 937
Kzo9I	GATC	3 cut(s)	63, 278, 589
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	3 cut(s)	217, 247, 515
Lsp1109I	GCAGC	7 cut(s)	24, 58, 193, 215, 221, 310, 559
LweI	GCATC	2 cut(s)	268, 442
MaeII	ACGT	2 cut(s)	182, 704
MaeIII	GTNAC	2 cut(s)	144, 178
MalI	GATC	3 cut(s)	65, 280, 591
MboI	GATC	3 cut(s)	63, 278, 589
MboII	GAAGA	9 cut(s)	278, 418, 518, 572, 594, 815, 818, 821, 824
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	4 cut(s)	483, 643, 887, 928
MlyI	GAGTC	2 cut(s)	229, 437
MmeI	TCCRAC	3 cut(s)	147, 263, 337
MnlI	CCTC	8 cut(s)	90, 225, 228, 339, 393, 612, 658, 700
Mph1103I	ATGCAT	2 cut(s)	261, 435
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	3 cut(s)	795, 837, 867
MslI	CAYNNNNRTG	2 cut(s)	428, 750
MspA1I	CMGCKG	2 cut(s)	15, 206
MspCI	CTTAAG	2 cut(s)	836, 866
MspI	CCGG	4 cut(s)	200, 245, 496, 651
MspR9I	CCNGG	5 cut(s)	245, 394, 497, 652, 681
MvaI	CCWGG	2 cut(s)	394, 681
MwoI	GCNNNNNNNGC	3 cut(s)	209, 256, 556
NciI	CCSGG	3 cut(s)	245, 497, 652
NdeII	GATC	3 cut(s)	63, 278, 589
NlaIII	CATG	5 cut(s)	130, 427, 433, 634, 937
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	413
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	2 cut(s)	261, 435
NspV	TTCGAA	1 cut(s)	334
PaeR7I	CTCGAG	1 cut(s)	851
PciSI	GCTCTTC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	506, 674
PflMI	CCANNNNNTGG	1 cut(s)	169
PfoI	TCCNGGA	1 cut(s)	495
PkrI	GCNGC	7 cut(s)	14, 73, 205, 208, 211, 325, 549
PleI	GAGTC	2 cut(s)	229, 437
PpsI	GAGTC	2 cut(s)	229, 437
Psp6I	CCWGG	2 cut(s)	392, 679
PspGI	CCWGG	2 cut(s)	392, 679
PspN4I	GGNNCC	1 cut(s)	174
PstI	CTGCAG	3 cut(s)	91, 211, 514
PstNI	CAGNNNCTG	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	4 cut(s)	56, 93, 118, 609
RsaNI	GTAC	4 cut(s)	55, 92, 117, 608
RseI	CAYNNNNRTG	2 cut(s)	428, 750
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	795, 837, 867
SatI	GCNGC	7 cut(s)	13, 72, 204, 207, 210, 324, 548
Sau3AI	GATC	3 cut(s)	63, 278, 589
ScaI	AGTACT	3 cut(s)	56, 93, 609
SchI	GAGTC	2 cut(s)	229, 437
ScrFI	CCNGG	5 cut(s)	245, 394, 497, 652, 681
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	2 cut(s)	268, 442
SfcI	CTRYAG	3 cut(s)	87, 207, 510
Sfr274I	CTCGAG	1 cut(s)	851
SfuI	TTCGAA	1 cut(s)	334
SlaI	CTCGAG	1 cut(s)	851
SmiMI	CAYNNNNRTG	2 cut(s)	428, 750
SmlI	CTYRAG	3 cut(s)	836, 851, 866
SmoI	CTYRAG	3 cut(s)	836, 851, 866
Sse9I	AATT	4 cut(s)	483, 643, 887, 928
SsiI	CCGC	3 cut(s)	15, 385, 489
SspI	AATATT	2 cut(s)	793, 947
StyD4I	CCNGG	5 cut(s)	243, 392, 495, 650, 679
TaaI	ACNGT	2 cut(s)	32, 767
TaiI	ACGT	2 cut(s)	185, 707
TaqI	TCGA	7 cut(s)	62, 185, 220, 277, 334, 672, 852
TaqII	GACCGA	1 cut(s)	872
TasI	AATT	4 cut(s)	483, 643, 887, 928
TatI	WGTACW	4 cut(s)	54, 91, 116, 607
TfiI	GAWTC	2 cut(s)	506, 674
Tru1I	TTAA	3 cut(s)	795, 837, 867
Tru9I	TTAA	3 cut(s)	795, 837, 867
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	7 cut(s)	12, 71, 203, 206, 209, 323, 547
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	731, 922
TspGWI	ACGGA	1 cut(s)	929
TspRI	CASTG	1 cut(s)	183
Van91I	CCANNNNNTGG	1 cut(s)	169
Vha464I	CTTAAG	2 cut(s)	836, 866
XapI	RAATTY	1 cut(s)	928
XhoI	CTCGAG	1 cut(s)	851
XmnI	GAANNNNTTC	1 cut(s)	365
ZraI	GACGTC	1 cut(s)	183
ZrmI	AGTACT	3 cut(s)	56, 93, 609
Zsp2I	ATGCAT	2 cut(s)	261, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.