Rmu_sc0000353.1_g000027

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000353.1
Physical Location & Seq
Forward (+)
107096 .. 113449
6354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000353.1_g000027.1.cds

Sequence Viewer

Length: 1536 bp
atggaatatgcgcacgcacattatgaggatgattcgggattcatgcgcatatctccccagtggtacactacatcaatacattggctcacactcggtccacctcttccagctgttgccagcaggttttggctggcattaaagttgctttggcttactactgaaaaatttatgagtccccagagtacattgaatccttgtagagccctagagggcatgcatggggtacatgtggtgcctagttcacggttcgaatcagaagagactactcaagatggggactttgctcactcaacttgtacaagttcggctattggaacaaatttgtctatgcagcgagtatggcagcacacaccaccatgtttgaagcctattcagggttgcattcacggcgatcgtaacctcgcagaaacagctgttaatgtgctcacttcacttcctttcatagttcttgggatccatgccccaaggaagaatctaaacaccaagctatatgctaattcattaattggagttggagttgcctcgagtttatatcattgttcaagaggaaaactaaggaaatatatgagatgggctgactatacaatgatagctacagcaacagtatgtctctcaagagcactcagaaatgaaaacccaaaattgctcatggcagcttctgcagtatttctacctatccagcctctgatggtttcagctgttcatactggaatgatggaggtagcgtttgccaaaagagcgttaaaagatccagagctaaggatggcacacaatgtgcataagatgtcgtcattattgggtggtgtactttttattgcagatgatgtgtttcccagaactccataccttcatgctgcatggcatcttgctgcagctgtaggtgttagcacctgcaataagcttctctaccttcaaatcccagaaatctctgccacccaccttgaagctctcaactctaggaatctagaaccggcggcgccaccccaagcaccagctaggaaaataccgaatcggccactagaagatgcagaaaatcctctgtctgcatccatagaaaaattggcagaaaagaaaaaagaaaaagaaaaaaaaaaggcagcccaagcagaagcccgagctgcaactcaagcccagaagcccaagccactgacgtcactgccctctgccacgtcattcgccaacgtcaacaacgtcagcaccggcaacagtcaccgccagcgacttttccgaccagttttccggcgacctatttcgagcttttgtgatttcaagtcagttcttgactacaactcggaagcacttcgcattaaattcttgatggaattttgtggtaaagacatcatagatgcgatgttgattgaaaagactctctctaccttcctcgtctttgcattgatagttgctaagaactatcgaatagatgttgctgcaggacggatcacaaggtttcataagctcattggagctatgaatattgctaaaaagtatgacaacattcttgtgaagcactataaatcgagatccgaggaaatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

511

Amino Acids

56.94

Weight (kDa)

9.54

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 899
AatII GACGTC 1 cut(s) 1154
Acc16I TGCGCA 2 cut(s) 12, 47
Acc36I ACCTGC 2 cut(s) 111, 899
AccB1I GGYRCC 2 cut(s) 232, 976
AciI CCGC 2 cut(s) 974, 1213
AclWI GGATC 5 cut(s) 448, 461, 743, 1445, 1515
AcoI YGGCCR 1 cut(s) 1013
AcsI RAATTY 4 cut(s) 164, 319, 1310, 1322
AcyI GRCGYC 2 cut(s) 977, 1151
AdeI CACNNNGTG 1 cut(s) 775
AfaI GTAC 5 cut(s) 65, 184, 225, 298, 807
AfiI CCNNNNNNNGG 1 cut(s) 374
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 7 cut(s) 190, 364, 543, 914, 944, 1270, 1361
AjiI CACGTC 1 cut(s) 1170
Alw21I GWGCWC 2 cut(s) 426, 622
Alw26I GTCTC 2 cut(s) 254, 614
AlwI GGATC 5 cut(s) 448, 461, 743, 1445, 1515
AlwNI CAGNNNCTG 2 cut(s) 659, 685
Ama87I CYCGRG 2 cut(s) 523, 1113
AoxI GGCC 1 cut(s) 1013
ApeKI GCWGC 9 cut(s) 331, 343, 653, 854, 869, 872, 1097, 1118, 1427
ApoI RAATTY 4 cut(s) 164, 319, 1310, 1322
AseI ATTAAT 1 cut(s) 503
Asp700I GAANNNNTTC 1 cut(s) 1299
AspLEI GCGC 3 cut(s) 13, 48, 979
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 1202
AsuII TTCGAA 1 cut(s) 249
AvaI CYCGRG 2 cut(s) 523, 1113
AvaII GGWCC 1 cut(s) 95
BamHI GGATCC 1 cut(s) 453
BanI GGYRCC 2 cut(s) 232, 976
BanII GRGCYC 1 cut(s) 205
Bbv12I GWGCWC 2 cut(s) 426, 622
BbvI GCAGC 9 cut(s) 343, 355, 665, 841, 856, 884, 1105, 1109, 1414
BccI CCATC 6 cut(s) 266, 564, 682, 709, 757, 1312
BceAI ACGGC 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 254, 614
BfaI CTAG 6 cut(s) 206, 237, 957, 965, 996, 1019
BfmI CTRYAG 5 cut(s) 594, 660, 870, 876, 1428
BfoI RGCGCY 1 cut(s) 980
BfuAI ACCTGC 2 cut(s) 111, 899
Bme18I GGWCC 1 cut(s) 95
BmeT110I CYCGRG 2 cut(s) 523, 1113
BmgBI CACGTC 1 cut(s) 1170
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 3 cut(s) 234, 455, 978
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 4 cut(s) 871, 1015, 1055, 1336
BmuI ACTGGG 1 cut(s) 52
Bpu10I CCTNAGC 1 cut(s) 758
Bpu14I TTCGAA 1 cut(s) 249
BpuEI CTTGAG 3 cut(s) 252, 598, 1110
BsaHI GRCGYC 2 cut(s) 977, 1151
BsaJI CCNNGG 2 cut(s) 464, 1524
BsaXI ACNNNNNCTCC 4 cut(s) 501, 531, 710, 740
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse118I RCCGGY 2 cut(s) 970, 1199
Bse1I ACTGG 3 cut(s) 58, 712, 1232
BseDI CCNNGG 2 cut(s) 464, 1524
BseGI GGATG 3 cut(s) 34, 768, 1046
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 637
BseNI ACTGG 3 cut(s) 58, 712, 1232
BseXI GCAGC 9 cut(s) 343, 355, 665, 841, 856, 884, 1105, 1109, 1414
Bsh1285I CGRYCG 1 cut(s) 394
BshFI GGCC 1 cut(s) 1015
BshNI GGYRCC 2 cut(s) 232, 976
BsiEI CGRYCG 1 cut(s) 394
BsiHKAI GWGCWC 2 cut(s) 426, 622
BsiHKCI CYCGRG 2 cut(s) 523, 1113
BsiSI CCGG 3 cut(s) 971, 1200, 1240
BslFI GGGAC 2 cut(s) 159, 290
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 2 cut(s) 254, 614
BsmFI GGGAC 2 cut(s) 159, 290
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 1 cut(s) 1015
BsoBI CYCGRG 2 cut(s) 523, 1113
Bsp119I TTCGAA 1 cut(s) 249
Bsp1286I GDGCHC 3 cut(s) 205, 426, 622
Bsp1407I TGTACA 1 cut(s) 296
Bsp143I GATC 5 cut(s) 391, 453, 748, 1437, 1520
BspACI CCGC 2 cut(s) 974, 1213
BspANI GGCC 1 cut(s) 1015
BspCNI CTCAG 1 cut(s) 636
BspLI GGNNCC 3 cut(s) 234, 455, 978
BspMAI CTGCAG 3 cut(s) 664, 874, 1432
BspMI ACCTGC 2 cut(s) 111, 899
BspPI GGATC 5 cut(s) 448, 461, 743, 1445, 1515
BspT104I TTCGAA 1 cut(s) 249
BspT107I GGYRCC 2 cut(s) 232, 976
BsrFI RCCGGY 2 cut(s) 970, 1199
BsrGI TGTACA 1 cut(s) 296
BsrI ACTGG 3 cut(s) 58, 712, 1232
BssAI RCCGGY 2 cut(s) 970, 1199
BssECI CCNNGG 2 cut(s) 464, 1524
BssMI GATC 5 cut(s) 391, 453, 748, 1437, 1520
BssNI GRCGYC 2 cut(s) 977, 1151
BssT1I CCWWGG 1 cut(s) 464
Bst4CI ACNGT 3 cut(s) 246, 604, 1208
Bst6I CTCTTC 2 cut(s) 108, 252
BstACI GRCGYC 2 cut(s) 977, 1151
BstAPI GCANNNNNTGC 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 296
BstBI TTCGAA 1 cut(s) 249
BstC8I GCNNGC 5 cut(s) 15, 118, 132, 215, 1217
BstDEI CTNAG 4 cut(s) 554, 623, 758, 1404
BstF5I GGATG 3 cut(s) 34, 768, 1046
BstH2I RGCGCY 1 cut(s) 980
BstHHI GCGC 3 cut(s) 13, 48, 979
BstKTI GATC 5 cut(s) 394, 456, 751, 1440, 1523
BstMAI GTCTC 2 cut(s) 254, 614
BstMBI GATC 5 cut(s) 391, 453, 748, 1437, 1520
BstMCI CGRYCG 1 cut(s) 394
BstMWI GCNNNNNNNGC 8 cut(s) 340, 387, 410, 659, 737, 1103, 1118, 1127
BstNSI RCATGY 2 cut(s) 217, 230
BstSFI CTRYAG 5 cut(s) 594, 660, 870, 876, 1428
BstV1I GCAGC 9 cut(s) 343, 355, 665, 841, 856, 884, 1105, 1109, 1414
BstX2I RGATCY 3 cut(s) 453, 748, 1520
BstYI RGATCY 3 cut(s) 453, 748, 1520
BsuRI GGCC 1 cut(s) 1015
BtgZI GCGATG 1 cut(s) 1364
BtrI CACGTC 1 cut(s) 1170
BtsCI GGATG 3 cut(s) 34, 768, 1046
BtsI GCAGTG 1 cut(s) 1154
BtsIMutI CAGTG 3 cut(s) 65, 1145, 1154
BveI ACCTGC 2 cut(s) 111, 899
Cac8I GCNNGC 5 cut(s) 15, 118, 132, 215, 1217
CaiI CAGNNNCTG 2 cut(s) 659, 685
CfoI GCGC 3 cut(s) 13, 48, 979
Cfr10I RCCGGY 2 cut(s) 970, 1199
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 5 cut(s) 64, 183, 224, 297, 806
CspCI CAANNNNNGTGG 4 cut(s) 342, 377, 922, 957
CviAII CATG 9 cut(s) 43, 214, 218, 227, 357, 458, 649, 851, 858
CviQI GTAC 5 cut(s) 64, 183, 224, 297, 806
DdeI CTNAG 4 cut(s) 554, 623, 758, 1404
DinI GGCGCC 1 cut(s) 978
DpnI GATC 5 cut(s) 393, 455, 750, 1439, 1522
DpnII GATC 5 cut(s) 391, 453, 748, 1437, 1520
DraIII CACNNNGTG 1 cut(s) 775
EaeI YGGCCR 1 cut(s) 1013
Eam1104I CTCTTC 2 cut(s) 108, 252
EarI CTCTTC 2 cut(s) 108, 252
Eco130I CCWWGG 1 cut(s) 464
Eco24I GRGCYC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 95
Eco88I CYCGRG 2 cut(s) 523, 1113
EcoT14I CCWWGG 1 cut(s) 464
EcoT22I ATGCAT 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 205
EgeI GGCGCC 1 cut(s) 978
EheI GGCGCC 1 cut(s) 978
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 9 cut(s) 46, 217, 221, 230, 360, 461, 652, 854, 861
FaqI GGGAC 2 cut(s) 159, 290
FatI CATG 9 cut(s) 42, 213, 217, 226, 356, 457, 648, 850, 857
FokI GGATG 3 cut(s) 41, 775, 1033
FriOI GRGCYC 1 cut(s) 205
FspAI RTGCGCAY 2 cut(s) 12, 47
FspBI CTAG 6 cut(s) 206, 237, 957, 965, 996, 1019
FspI TGCGCA 2 cut(s) 12, 47
GlaI GCGC 3 cut(s) 12, 47, 978
HaeII RGCGCY 1 cut(s) 980
HaeIII GGCC 1 cut(s) 1015
HapII CCGG 3 cut(s) 971, 1200, 1240
HhaI GCGC 3 cut(s) 13, 48, 979
Hin1I GRCGYC 2 cut(s) 977, 1151
Hin1II CATG 9 cut(s) 46, 217, 221, 230, 360, 461, 652, 854, 861
Hin6I GCGC 3 cut(s) 11, 46, 977
HinP1I GCGC 3 cut(s) 11, 46, 977
HincII GTYRAC 1 cut(s) 1186
HindII GTYRAC 1 cut(s) 1186
HindIII AAGCTT 1 cut(s) 899
HinfI GANTC 9 cut(s) 32, 39, 172, 190, 251, 472, 961, 1009, 1366
HpaII CCGG 3 cut(s) 971, 1200, 1240
HphI GGTGA 1 cut(s) 1202
Hpy166II GTNNAC 5 cut(s) 66, 98, 242, 806, 1186
Hpy188I TCNGA 6 cut(s) 256, 626, 687, 1229, 1294, 1525
Hpy188III TCNNGA 9 cut(s) 36, 269, 543, 615, 752, 965, 1280, 1315, 1518
Hpy8I GTNNAC 5 cut(s) 66, 98, 242, 806, 1186
HpyAV CCTTC 3 cut(s) 857, 920, 1387
HpyCH4III ACNGT 3 cut(s) 246, 604, 1208
HpyCH4IV ACGT 4 cut(s) 1151, 1169, 1182, 1191
HpyF10VI GCNNNNNNNGC 8 cut(s) 340, 387, 410, 659, 737, 1103, 1118, 1127
HpyF3I CTNAG 4 cut(s) 554, 623, 758, 1404
HpySE526I ACGT 4 cut(s) 1151, 1169, 1182, 1191
Hsp92I GRCGYC 2 cut(s) 977, 1151
Hsp92II CATG 9 cut(s) 46, 217, 221, 230, 360, 461, 652, 854, 861
HspAI GCGC 3 cut(s) 11, 46, 977
KasI GGCGCC 1 cut(s) 976
Kzo9I GATC 5 cut(s) 391, 453, 748, 1437, 1520
LmnI GCTCC 1 cut(s) 1463
Lsp1109I GCAGC 9 cut(s) 343, 355, 665, 841, 856, 884, 1105, 1109, 1414
LweI GCATC 4 cut(s) 871, 1015, 1055, 1336
MaeI CTAG 6 cut(s) 206, 237, 957, 965, 996, 1019
MaeII ACGT 4 cut(s) 1151, 1169, 1182, 1191
MaeIII GTNAC 3 cut(s) 395, 1152, 1208
MalI GATC 5 cut(s) 393, 455, 750, 1439, 1522
MboI GATC 5 cut(s) 391, 453, 748, 1437, 1520
MboII GAAGA 4 cut(s) 95, 269, 481, 1034
MflI RGATCY 3 cut(s) 453, 748, 1520
MhlI GDGCHC 3 cut(s) 205, 426, 622
MluCI AATT 8 cut(s) 164, 319, 496, 504, 641, 1058, 1310, 1322
Mly113I GGCGCC 1 cut(s) 977
MlyI GAGTC 2 cut(s) 181, 1360
MmeI TCCRAC 2 cut(s) 493, 1252
Mph1103I ATGCAT 1 cut(s) 219
MroXI GAANNNNTTC 1 cut(s) 1299
MseI TTAA 5 cut(s) 137, 417, 503, 743, 1308
MslI CAYNNNNRTG 2 cut(s) 355, 1499
MspA1I CMGCKG 4 cut(s) 110, 413, 698, 875
MspI CCGG 3 cut(s) 971, 1200, 1240
Mva1269I GAATGC 1 cut(s) 381
MwoI GCNNNNNNNGC 8 cut(s) 340, 387, 410, 659, 737, 1103, 1118, 1127
NarI GGCGCC 1 cut(s) 977
NdeII GATC 5 cut(s) 391, 453, 748, 1437, 1520
NlaIII CATG 9 cut(s) 46, 217, 221, 230, 360, 461, 652, 854, 861
NlaIV GGNNCC 3 cut(s) 234, 455, 978
NmuCI GTSAC 2 cut(s) 1152, 1208
NsbI TGCGCA 2 cut(s) 12, 47
NsiI ATGCAT 1 cut(s) 219
NspI RCATGY 2 cut(s) 217, 230
NspV TTCGAA 1 cut(s) 249
PaeI GCATGC 1 cut(s) 217
PaeR7I CTCGAG 1 cut(s) 523
PaqCI CACCTGC 1 cut(s) 899
PciI ACATGT 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 1188
PctI GAATGC 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 1299
PfeI GAWTC 7 cut(s) 32, 39, 190, 251, 472, 961, 1009
Ple19I CGATCG 1 cut(s) 394
PleI GAGTC 2 cut(s) 180, 1360
PluTI GGCGCC 1 cut(s) 980
PpsI GAGTC 2 cut(s) 180, 1360
PscI ACATGT 1 cut(s) 226
PshBI ATTAAT 1 cut(s) 503
PspN4I GGNNCC 3 cut(s) 234, 455, 978
PspPI GGNCC 1 cut(s) 95
PspXI VCTCGAGB 1 cut(s) 523
PstI CTGCAG 3 cut(s) 664, 874, 1432
PstNI CAGNNNCTG 2 cut(s) 659, 685
PsuI RGATCY 3 cut(s) 453, 748, 1520
PvuI CGATCG 1 cut(s) 394
PvuII CAGCTG 4 cut(s) 110, 413, 698, 875
RsaI GTAC 5 cut(s) 65, 184, 225, 298, 807
RsaNI GTAC 5 cut(s) 64, 183, 224, 297, 806
RseI CAYNNNNRTG 2 cut(s) 355, 1499
SaqAI TTAA 5 cut(s) 137, 417, 503, 743, 1308
Sau3AI GATC 5 cut(s) 391, 453, 748, 1437, 1520
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 2 cut(s) 181, 1360
SduI GDGCHC 3 cut(s) 205, 426, 622
SfaNI GCATC 4 cut(s) 871, 1015, 1055, 1336
SfcI CTRYAG 5 cut(s) 594, 660, 870, 876, 1428
SfoI GGCGCC 1 cut(s) 978
Sfr274I CTCGAG 1 cut(s) 523
SfuI TTCGAA 1 cut(s) 249
SinI GGWCC 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 523
SmiMI CAYNNNNRTG 2 cut(s) 355, 1499
SmlI CTYRAG 4 cut(s) 267, 523, 613, 1125
SmoI CTYRAG 4 cut(s) 267, 523, 613, 1125
SphI GCATGC 1 cut(s) 217
Sse9I AATT 8 cut(s) 164, 319, 496, 504, 641, 1058, 1310, 1322
SsiI CCGC 2 cut(s) 974, 1213
SspDI GGCGCC 1 cut(s) 976
SspI AATATT 1 cut(s) 1474
SspMI CTAG 6 cut(s) 206, 237, 957, 965, 996, 1019
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 3 cut(s) 246, 604, 1208
TaiI ACGT 4 cut(s) 1154, 1172, 1185, 1194
TaqI TCGA 5 cut(s) 249, 524, 1253, 1414, 1517
TaqII GACCGA 1 cut(s) 83
TasI AATT 8 cut(s) 164, 319, 496, 504, 641, 1058, 1310, 1322
TatI WGTACW 3 cut(s) 182, 296, 805
TauI GCSGC 1 cut(s) 977
TfiI GAWTC 7 cut(s) 32, 39, 190, 251, 472, 961, 1009
Tru1I TTAA 5 cut(s) 137, 417, 503, 743, 1308
Tru9I TTAA 5 cut(s) 137, 417, 503, 743, 1308
TscAI CASTG 3 cut(s) 65, 1152, 1161
TseFI GTSAC 2 cut(s) 1152, 1208
TseI GCWGC 9 cut(s) 331, 343, 653, 854, 869, 872, 1097, 1118, 1427
Tsp45I GTSAC 2 cut(s) 1152, 1208
TspDTI ATGAA 8 cut(s) 31, 430, 489, 645, 692, 839, 1439, 1484
TspGWI ACGGA 1 cut(s) 1450
TspRI CASTG 3 cut(s) 65, 1152, 1161
VpaK11BI GGWCC 1 cut(s) 95
VspI ATTAAT 1 cut(s) 503
XapI RAATTY 4 cut(s) 164, 319, 1310, 1322
XbaI TCTAGA 1 cut(s) 964
XceI RCATGY 2 cut(s) 217, 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 1057
XhoI CTCGAG 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 1299
XspI CTAG 6 cut(s) 206, 237, 957, 965, 996, 1019
ZraI GACGTC 1 cut(s) 1152
Zsp2I ATGCAT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.