Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005818

Physical Location & Seq

Genomic Coordinates Forward (+)

26731782 .. 26734022

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G70900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAGCCCTCAGAGCGTATCGAAGACTAGCAAATCCCTTGAGGGTGTCCATGGGGTTCATGTTGTATCTCATTCTCATTTCGGATTTGAAAGTATTGGCCAAGTCTCTGGCTTTGAGTCTGCGGATGCAGGAACAAAGCAGAGACTTTTCATTGAACGTGTTTGGCAACAAAGACCTCCATGCCTAAGACCCATCCATTGCAGCATCCATGGTGATCAGAGTATCTTAGAAACAGCTGCTAATGTGATCACATCGATCCCTTTCATTTTCCTCGGTATGCAGGCACCGAGGAAAAACCTGAACATGAAGGTATATGCAAACTCCTTAATCGGAGTTGGAATTGCATCGAGTTTGTATCATTCTTCAAGAGGGAAGTTTAGGAAGTACCTTAGATGGGCTGATTACACAATGATAGCTACAGCGACAATATGTCTAACGAGGGCGCTTAGAGAAGAGAACCCAAAGTTCTTGATGGCTGCATCAGCTTTGGCTCTACCGTTTCAGCCTCTCGTGGTATCAGCTGTTCACACTGGAATGATGGAGGTAGCATTTGCGAAACGAGCCTTAGAGGATCCGGATTTGAAAATGGCTCATGATGTACACAAGATGTCTTCGTTATTAGGCGGAGCATTGTTCATAGCTGATGATCTTTTCCCTGAAACACCATTCATTCACGCCGGTTGGCATCTCGCCGCAGCCATTGGCGTTGGAACTTGCAATAAGCTTCTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

26.7

Weight (kDa)

9.1

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G23110 AT1G70900
fragaria_vesca	FvH4_4g32670
malus_domestica	MD13G1023800.v1.1 MD16G1026500.v1.1
prunus_persica	Prupe.1G326900_v2.0.a1
pyrus_communis	pycom13g02220 pycom16g02230
rosa_chinensis	RchiOBHm_Chr4g0441581
rosa_laevigata	RLG00000006083
rosa_multiflora	Rmu_sc0000353.1_g000027
rosa_roxburghii	Rroxscaffold_5G00382420
rosa_rugosa	Rorug04G0334700 Rorug04G0334700 Rorug04G0334700 Rorug04G0334700 Rorug04G0334800
rosa_samantha	Rh4AG386100 Rh4BG400300 Rh4CG415200 Rh4DG393000
rosa_wichuraiana	Rw4G033350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AccIII	TCCGGA	1 cut(s)	574
AciI	CCGC	3 cut(s)	122, 624, 693
AclWI	GGATC	3 cut(s)	250, 566, 579
AcoI	YGGCCR	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	713
AfaI	GTAC	2 cut(s)	386, 600
AfiI	CCNNNNNNNGG	1 cut(s)	394
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	4 cut(s)	89, 155, 366, 583
AhdI	GACNNNNNGTC	1 cut(s)	429
AluBI	AGCT	6 cut(s)	236, 416, 485, 521, 641, 724
AluI	AGCT	6 cut(s)	236, 416, 485, 521, 641, 724
Alw26I	GTCTC	2 cut(s)	109, 136
AlwI	GGATC	3 cut(s)	250, 566, 579
Aor13HI	TCCGGA	1 cut(s)	574
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	4 cut(s)	201, 236, 476, 695
AspLEI	GCGC	1 cut(s)	445
AsuHPI	GGTGA	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	99
BamHI	GGATCC	1 cut(s)	571
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	509
BbsI	GAAGAC	2 cut(s)	29, 603
BbvI	GCAGC	4 cut(s)	213, 223, 463, 707
BccI	CCATC	4 cut(s)	200, 387, 466, 532
BclI	TGATCA	2 cut(s)	214, 246
BcoDI	GTCTC	2 cut(s)	109, 136
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	446
BisI	GCNGC	5 cut(s)	202, 237, 477, 693, 696
BlsI	GCNGC	5 cut(s)	203, 238, 478, 694, 697
BmeRI	GACNNNNNGTC	1 cut(s)	429
BmiI	GGNNCC	2 cut(s)	285, 573
BmsI	GCATC	5 cut(s)	115, 213, 353, 488, 694
BpiI	GAAGAC	2 cut(s)	29, 603
BpuEI	CTTGAG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	254
BsaJI	CCNNGG	4 cut(s)	49, 208, 271, 287
BsaWI	WCCGGW	1 cut(s)	574
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	1 cut(s)	535
Bse3DI	GCAATG	1 cut(s)	196
BseAI	TCCGGA	1 cut(s)	574
BseCI	ATCGAT	1 cut(s)	254
BseDI	CCNNGG	4 cut(s)	49, 208, 271, 287
BseGI	GGATG	3 cut(s)	130, 192, 204
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	535
BseXI	GCAGC	4 cut(s)	213, 223, 463, 707
BshFI	GGCC	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	283
BshVI	ATCGAT	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	575, 678
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	2 cut(s)	109, 136
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	574
Bsp1407I	TGTACA	1 cut(s)	598
Bsp143I	GATC	5 cut(s)	214, 246, 255, 571, 646
Bsp19I	CCATGG	2 cut(s)	49, 208
BspACI	CCGC	3 cut(s)	122, 624, 693
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	22
BspDI	ATCGAT	1 cut(s)	254
BspEI	TCCGGA	1 cut(s)	574
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	2 cut(s)	285, 573
BspPI	GGATC	3 cut(s)	250, 566, 579
BspT107I	GGYRCC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	677
BsrGI	TGTACA	1 cut(s)	598
BsrI	ACTGG	1 cut(s)	535
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	4 cut(s)	49, 208, 271, 287
BssMI	GATC	5 cut(s)	214, 246, 255, 571, 646
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	2 cut(s)	49, 208
Bst2BI	CACGAG	1 cut(s)	509
Bst4CI	ACNGT	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	447
BstAUI	TGTACA	1 cut(s)	598
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	6 cut(s)	9, 185, 226, 389, 446, 565
BstDSI	CCRYGG	2 cut(s)	49, 208
BstF5I	GGATG	3 cut(s)	130, 192, 204
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	5 cut(s)	217, 249, 258, 574, 649
BstMAI	GTCTC	2 cut(s)	109, 136
BstMBI	GATC	5 cut(s)	214, 246, 255, 571, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 482, 560
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	4 cut(s)	213, 223, 463, 707
BstV2I	GAAGAC	2 cut(s)	29, 603
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	571
Bsu15I	ATCGAT	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	254
BtgI	CCRYGG	2 cut(s)	49, 208
BtsCI	GGATG	3 cut(s)	130, 192, 204
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	1 cut(s)	282
CciI	TCATGA	1 cut(s)	592
CfoI	GCGC	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	677
ClaI	ATCGAT	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	385, 599
CviAII	CATG	6 cut(s)	50, 59, 180, 209, 304, 593
CviQI	GTAC	2 cut(s)	385, 599
DdeI	CTNAG	6 cut(s)	9, 185, 226, 389, 446, 565
DpnI	GATC	5 cut(s)	216, 248, 257, 573, 648
DpnII	GATC	5 cut(s)	214, 246, 255, 571, 646
DriI	GACNNNNNGTC	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	447
Eam1105I	GACNNNNNGTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	447
EciI	GGCGGA	1 cut(s)	639
Eco130I	CCWWGG	2 cut(s)	49, 208
Eco24I	GRGCYC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	713
EcoT14I	CCWWGG	2 cut(s)	49, 208
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	49, 208
FaeI	CATG	6 cut(s)	53, 62, 183, 212, 307, 596
FatI	CATG	6 cut(s)	49, 58, 179, 208, 303, 592
FbaI	TGATCA	2 cut(s)	214, 246
Fnu4HI	GCNGC	5 cut(s)	202, 237, 477, 693, 696
FokI	GGATG	3 cut(s)	137, 179, 191
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	5 cut(s)	202, 237, 477, 693, 696
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	5 cut(s)	202, 237, 477, 693, 696
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	2 cut(s)	575, 678
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	6 cut(s)	53, 62, 183, 212, 307, 596
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	2 cut(s)	575, 678
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	526, 601
Hpy188I	TCNGA	4 cut(s)	12, 83, 219, 332
Hpy188III	TCNNGA	4 cut(s)	366, 469, 575, 593
Hpy8I	GTNNAC	2 cut(s)	526, 601
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	7 cut(s)	128, 201, 280, 317, 344, 479, 717
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 482, 560
HpyF3I	CTNAG	6 cut(s)	9, 185, 226, 389, 446, 565
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	6 cut(s)	53, 62, 183, 212, 307, 596
HspAI	GCGC	1 cut(s)	443
Kpn2I	TCCGGA	1 cut(s)	574
Ksp22I	TGATCA	2 cut(s)	214, 246
Kzo9I	GATC	5 cut(s)	214, 246, 255, 571, 646
LmnI	GCTCC	1 cut(s)	626
LpnPI	CCDG	8 cut(s)	93, 114, 266, 311, 516, 588, 669, 691
Lsp1109I	GCAGC	4 cut(s)	213, 223, 463, 707
LweI	GCATC	5 cut(s)	115, 213, 353, 488, 694
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	157
MalI	GATC	5 cut(s)	216, 248, 257, 573, 648
MboI	GATC	5 cut(s)	214, 246, 255, 571, 646
MboII	GAAGA	5 cut(s)	34, 354, 464, 603, 719
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	1 cut(s)	339
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	2 cut(s)	316, 688
Mox20I	TGGCCA	1 cut(s)	99
MroI	TCCGGA	1 cut(s)	574
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	236, 521
MspI	CCGG	2 cut(s)	575, 678
MwoI	GCNNNNNNNGC	3 cut(s)	12, 482, 560
NcoI	CCATGG	2 cut(s)	49, 208
NdeII	GATC	5 cut(s)	214, 246, 255, 571, 646
NlaIII	CATG	6 cut(s)	53, 62, 183, 212, 307, 596
NlaIV	GGNNCC	2 cut(s)	285, 573
PagI	TCATGA	1 cut(s)	592
PkrI	GCNGC	5 cut(s)	203, 238, 478, 694, 697
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	285, 573
PsrI	GAACNNNNNNTAC	2 cut(s)	507, 539
PsuI	RGATCY	1 cut(s)	571
PvuII	CAGCTG	2 cut(s)	236, 521
RsaI	GTAC	2 cut(s)	386, 600
RsaNI	GTAC	2 cut(s)	385, 599
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	5 cut(s)	202, 237, 477, 693, 696
Sau3AI	GATC	5 cut(s)	214, 246, 255, 571, 646
SchI	GAGTC	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	5 cut(s)	115, 213, 353, 488, 694
SfcI	CTRYAG	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	3 cut(s)	122, 624, 693
SspMI	CTAG	1 cut(s)	27
StyI	CCWWGG	2 cut(s)	49, 208
TaaI	ACNGT	1 cut(s)	498
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	3 cut(s)	20, 254, 347
TasI	AATT	1 cut(s)	339
TatI	WGTACW	1 cut(s)	598
TauI	GCSGC	1 cut(s)	695
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	4 cut(s)	201, 236, 476, 695
TspDTI	ATGAA	6 cut(s)	47, 139, 253, 320, 625, 658
TspRI	CASTG	1 cut(s)	535
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.