Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005977

Physical Location & Seq

Genomic Coordinates Forward (+)

8332862 .. 8336414

Gene Structure 3553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGTCACCATTTTTGAAGTTCTTTCTCTTTCTCTATGATTATCTTTCACCTTCCTCTTTCTTTCTGGTCCAAAGAAATACCTTAGGAGCATCATTAGATACTACAGATGGGGTTGTGAGAAGTGGCATAATTGGAGAGATTATATACATTTGGAAGCAGACAAGAATCTTTGTCTTTATACCAATCTTGAAATGCTTAGTGACAATATGTTTGGTAATGTCCCTTTTGTTGTTCATAGAAAGAGTTTATATGAGCATAGTAGTAGTGTTTGTGAAATTACTTAGACGAACACCTGAGAAAGTACACAAGTGGGAACCTATAAACGATGATGACCTTGAGCTTGCCAATACAAACTACCCAATGGTTCTCATTCAGATCCCAATGTACAATGAAAAAGAGGTTTGTCAGTTATCTATAGGAGCAGCCTGTAGACTTTCTTGGCCATTGGATCGAATGATAGTTCAAGTACTTGATGATTCCACAGATCCAGCTAGTAAGGAATTGGTGAATGCGGAATGTGATAAATGGGCGAGGAAAGGTATAAACATAATGTCAGAGATTAGAGACAACAGAATTGGATACAAAGCAGGAGCATTAAAGGCAGGAATGATGCACAACTATGTGAAACAATGCGAATTCGTCGCCATTTTCGATGCTGATTTTCAGCCTGATCCTGACTTTCTTGAACGAACCATTCCTTTTCTTATTCACAACCATGAAATCTCTCTTGTTCAATGCCGTTGGAAGTTTGTGAATGCAAACGAGTGCTTAATGACAAGAATGCAAGAGATGTCACTAAACTACCATTTTGTGGCTGAGCAAGAATCTGGATCTTCAATACATGCTTTCTTTGGATTCAATGGAACCGCGGGTGTATGGAGAATCGCAGCTTTAAACGAAGCTGGAGGATGGAAAGATCGAACAACCGTAGAAGATATGGATTTAGCAGTAAGAGCTTGTCTTCATGGTTGGAAATTTGTCTATGTCCATGACGTCGAGGTGAAAAATGAATTGCCAAGTACATTCAAAGCATACAGGTTTCAGCAACATAGATGGTCTTGTGGACCAGCTAATCTATGGAGGAAGATGACAATGGAAATCTTACAGAACAAGAAAGTGTCGGCCTGGAAGAAATTGTATCTCATATACAATTTCTTCTTCATAAGGAAGATTGTAGTACACATCTTCACATTTGTCTTCTACTGTCTGATATTACCAACAACTGTGCTATTCCCTGAGCTCCAAGTTCCTAAATGGGCAACTGTTTATTTTCCTACTACAATCACTATCCTTAACGCAATCGCTACACCTCGATCACTCCATCTTCTTGTCTTTTGGATCTTATTCGAGAATGTAATGTCGATGCATCGCACAAAAGCGACATTCATCGGGTTACTAGAGGCAGGACGGGTTAACGAATGGGTTGTTACTGAAAAATTAGGTGACACTCTCAAGTCTAAGTTAATAGGTAAAGCTACAACTAAGCTTTATACCAGATTTGGACAAAGACTCAACTGGAGAGAACTCGTTGTTGGATTATATATATTCTTCTGCGGATGTTACGATTTCGCATATGGAGGATCATACTTTTATGTTTATCTGTTTTTACAGTCTTGTGCATTTTTTGTTGCTGGAGTTGGTTATATTGGCACATTTGTTCCAACTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3

Protein Analysis

556

Amino Acids

64.4

Weight (kDa)

8.68

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_tranf_2_3	PF13641	122 - 355	8.7e-16	Glycosyltransferase like family 2
Glycos_transf_2	PF00535	126 - 283	4.1e-09	Glycosyl transferase family 2
Glyco_trans_2_3	PF13632	214 - 427	1.2e-23	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23480 AT1G23480 AT1G23480 AT1G23480 AT2G35650 AT2G35650 AT2G35650 AT5G16190
fragaria_vesca	FvH4_7g06310
malus_domestica	MD02G1245000.v1.1 MD07G1071900.v1.1
prunus_persica	Prupe.2G089900_v2.0.a1 Prupe.2G089900_v2.0.a1 Prupe.2G090000_v2.0.a1
pyrus_communis	pycom07g05480
rosa_chinensis	RchiOBHm_Chr1g0334161
rosa_laevigata	RLG00000029475
rosa_multiflora	Rmu_sc0003690.1_g000039 Rmu_sc0008401.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316980
rosa_rugosa	Rorug01G0113000
rosa_samantha	Rh1AG137000 Rh1BG104400 Rh1CG129200
rosa_wichuraiana	Rw0G019290 Rw0G020510 Rw1G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	996
AccB7I	CCANNNNNTGG	1 cut(s)	811
AccI	GTMKAC	1 cut(s)	430
AccII	CGCG	1 cut(s)	869
AciI	CCGC	4 cut(s)	512, 867, 869, 1554
AclWI	GGATC	7 cut(s)	370, 456, 479, 665, 838, 1346, 1588
AcoI	YGGCCR	1 cut(s)	440
AcsI	RAATTY	2 cut(s)	635, 974
AcyI	GRCGYC	1 cut(s)	993
AfaI	GTAC	5 cut(s)	303, 386, 468, 1021, 1179
AfiI	CCNNNNNNNGG	1 cut(s)	811
AgsI	TTSAA	8 cut(s)	16, 190, 464, 686, 734, 837, 859, 1027
AjnI	CCWGG	1 cut(s)	1124
AjuI	GAANNNNNNNTTGG	2 cut(s)	1515, 1547
AluBI	AGCT	9 cut(s)	340, 491, 890, 902, 956, 1070, 1240, 1475, 1486
AluI	AGCT	9 cut(s)	340, 491, 890, 902, 956, 1070, 1240, 1475, 1486
Alw21I	GWGCWC	1 cut(s)	1242
Alw26I	GTCTC	1 cut(s)	558
AlwI	GGATC	7 cut(s)	370, 456, 479, 665, 838, 1346, 1588
AoxI	GGCC	2 cut(s)	440, 1122
ApeKI	GCWGC	2 cut(s)	422, 887
ApoI	RAATTY	2 cut(s)	635, 974
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
AspS9I	GGNCC	2 cut(s)	67, 1064
AsuHPI	GGTGA	4 cut(s)	39, 517, 1012, 1454
AvaII	GGWCC	2 cut(s)	67, 1064
AxyI	CCTNAGG	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	1242
BbsI	GAAGAC	2 cut(s)	953, 1189
Bbv12I	GWGCWC	1 cut(s)	1242
BbvI	GCAGC	2 cut(s)	434, 899
BccI	CCATC	4 cut(s)	101, 903, 1047, 1329
BceAI	ACGGC	1 cut(s)	723
BciT130I	CCWGG	1 cut(s)	1126
BciVI	GTATCC	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	2 cut(s)	492, 1397
BfmI	CTRYAG	3 cut(s)	102, 414, 427
BfuI	GTATCC	1 cut(s)	572
BisI	GCNGC	2 cut(s)	423, 888
BlpI	GCTNAGC	1 cut(s)	816
BlsI	GCNGC	2 cut(s)	424, 889
BmcAI	AGTACT	1 cut(s)	468
Bme1390I	CCNGG	1 cut(s)	1126
Bme18I	GGWCC	2 cut(s)	67, 1064
BmgT120I	GGNCC	2 cut(s)	67, 1064
BmiI	GGNNCC	2 cut(s)	315, 865
BmrFI	CCNGG	1 cut(s)	1126
BmsI	GCATC	5 cut(s)	98, 600, 643, 1353, 1375
BpiI	GAAGAC	2 cut(s)	953, 1189
BpmI	CTGGAG	3 cut(s)	924, 1537, 1653
Bpu10I	CCTNAGC	1 cut(s)	1236
Bpu1102I	GCTNAGC	1 cut(s)	816
BpuEI	CTTGAG	2 cut(s)	356, 1436
BsaHI	GRCGYC	1 cut(s)	993
BsaJI	CCNNGG	1 cut(s)	867
Bsc4I	CCNNNNNNNGG	1 cut(s)	811
Bse1I	ACTGG	1 cut(s)	1520
Bse21I	CCTNAGG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	1126
BseDI	CCNNGG	1 cut(s)	867
BseGI	GGATG	2 cut(s)	914, 1562
BseLI	CCNNNNNNNGG	1 cut(s)	811
BseMII	CTCAG	3 cut(s)	285, 807, 1227
BseNI	ACTGG	1 cut(s)	1520
BseXI	GCAGC	2 cut(s)	434, 899
Bsh1236I	CGCG	1 cut(s)	869
BshFI	GGCC	2 cut(s)	442, 1124
BsiHKAI	GWGCWC	1 cut(s)	1242
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	811
BsmAI	GTCTC	1 cut(s)	558
BsmFI	GGGAC	1 cut(s)	205
BsmI	GAATGC	3 cut(s)	514, 760, 786
BsnI	GGCC	2 cut(s)	442, 1124
Bsp1286I	GDGCHC	1 cut(s)	1242
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	9 cut(s)	375, 448, 484, 670, 830, 916, 1313, 1338, 1580
Bsp1720I	GCTNAGC	1 cut(s)	816
BspACI	CCGC	4 cut(s)	512, 867, 869, 1554
BspANI	GGCC	2 cut(s)	442, 1124
BspCNI	CTCAG	3 cut(s)	286, 808, 1228
BspFNI	CGCG	1 cut(s)	869
BspLI	GGNNCC	2 cut(s)	315, 865
BspPI	GGATC	7 cut(s)	370, 456, 479, 665, 838, 1346, 1588
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	1520
BssECI	CCNNGG	1 cut(s)	867
BssMI	GATC	9 cut(s)	375, 448, 484, 670, 830, 916, 1313, 1338, 1580
BssNI	GRCGYC	1 cut(s)	993
Bst2UI	CCWGG	1 cut(s)	1126
Bst4CI	ACNGT	6 cut(s)	928, 1205, 1225, 1264, 1611, 1666
BstACI	GRCGYC	1 cut(s)	993
BstAUI	TGTACA	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	8 cut(s)	82, 196, 281, 294, 816, 1236, 1458, 1482
BstDSI	CCRYGG	1 cut(s)	867
BstF5I	GGATG	2 cut(s)	914, 1562
BstFNI	CGCG	1 cut(s)	869
BstKTI	GATC	9 cut(s)	378, 451, 487, 673, 833, 919, 1316, 1341, 1583
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	9 cut(s)	375, 448, 484, 670, 830, 916, 1313, 1338, 1580
BstMWI	GCNNNNNNNGC	2 cut(s)	599, 953
BstNI	CCWGG	1 cut(s)	1126
BstNSI	RCATGY	1 cut(s)	845
BstSCI	CCNGG	1 cut(s)	1124
BstSFI	CTRYAG	3 cut(s)	102, 414, 427
BstUI	CGCG	1 cut(s)	869
BstV1I	GCAGC	2 cut(s)	434, 899
BstV2I	GAAGAC	2 cut(s)	953, 1189
BstX2I	RGATCY	4 cut(s)	375, 484, 830, 1338
BstYI	RGATCY	4 cut(s)	375, 484, 830, 1338
Bsu36I	CCTNAGG	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	2 cut(s)	442, 1124
BtgI	CCRYGG	1 cut(s)	867
BtgZI	GCGATG	1 cut(s)	1352
BtsCI	GGATG	2 cut(s)	914, 1562
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	67, 1064
Cfr42I	CCGCGG	1 cut(s)	870
Csp6I	GTAC	5 cut(s)	302, 385, 467, 1020, 1178
CviAII	CATG	4 cut(s)	716, 842, 965, 989
CviQI	GTAC	5 cut(s)	302, 385, 467, 1020, 1178
DdeI	CTNAG	8 cut(s)	82, 196, 281, 294, 816, 1236, 1458, 1482
DpnI	GATC	9 cut(s)	377, 450, 486, 672, 832, 918, 1315, 1340, 1582
DpnII	GATC	9 cut(s)	375, 448, 484, 670, 830, 916, 1313, 1338, 1580
DraI	TTTAAA	1 cut(s)	894
EaeI	YGGCCR	1 cut(s)	440
Ecl136II	GAGCTC	1 cut(s)	1240
Eco24I	GRGCYC	1 cut(s)	1242
Eco47I	GGWCC	2 cut(s)	67, 1064
Eco53kI	GAGCTC	1 cut(s)	1240
Eco81I	CCTNAGG	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	1240
EcoRI	GAATTC	1 cut(s)	635
EcoRII	CCWGG	1 cut(s)	1124
EcoT22I	ATGCAT	1 cut(s)	1368
EcoT38I	GRGCYC	1 cut(s)	1242
FaeI	CATG	4 cut(s)	719, 845, 968, 992
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	4 cut(s)	715, 841, 964, 988
FauI	CCCGC	1 cut(s)	862
FauNDI	CATATG	1 cut(s)	1573
FblI	GTMKAC	1 cut(s)	430
Fnu4HI	GCNGC	2 cut(s)	423, 888
FokI	GGATG	2 cut(s)	921, 1569
FriOI	GRGCYC	1 cut(s)	1242
Fsp4HI	GCNGC	2 cut(s)	423, 888
FspBI	CTAG	2 cut(s)	492, 1397
GluI	GCNGC	2 cut(s)	423, 888
GsuI	CTGGAG	3 cut(s)	924, 1537, 1653
HaeIII	GGCC	2 cut(s)	442, 1124
Hin1I	GRCGYC	1 cut(s)	993
Hin1II	CATG	4 cut(s)	719, 845, 968, 992
HincII	GTYRAC	1 cut(s)	1414
HindII	GTYRAC	1 cut(s)	1414
HindIII	AAGCTT	1 cut(s)	1484
HinfI	GANTC	6 cut(s)	165, 476, 824, 855, 882, 1509
HpaI	GTTAAC	1 cut(s)	1414
HphI	GGTGA	4 cut(s)	39, 517, 1012, 1454
Hpy166II	GTNNAC	5 cut(s)	304, 431, 1064, 1180, 1414
Hpy188I	TCNGA	3 cut(s)	375, 556, 1209
Hpy188III	TCNNGA	5 cut(s)	187, 674, 683, 828, 1348
Hpy8I	GTNNAC	5 cut(s)	304, 431, 1064, 1180, 1414
Hpy99I	CGWCG	2 cut(s)	644, 998
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	6 cut(s)	928, 1205, 1225, 1264, 1611, 1666
HpyCH4IV	ACGT	1 cut(s)	993
HpyCH4V	TGCA	5 cut(s)	613, 758, 784, 1366, 1619
HpyF10VI	GCNNNNNNNGC	2 cut(s)	599, 953
HpyF3I	CTNAG	8 cut(s)	82, 196, 281, 294, 816, 1236, 1458, 1482
HpySE526I	ACGT	1 cut(s)	993
Hsp92I	GRCGYC	1 cut(s)	993
Hsp92II	CATG	4 cut(s)	719, 845, 968, 992
KspAI	GTTAAC	1 cut(s)	1414
KspI	CCGCGG	1 cut(s)	870
Kzo9I	GATC	9 cut(s)	375, 448, 484, 670, 830, 916, 1313, 1338, 1580
LmnI	GCTCC	4 cut(s)	86, 419, 590, 1245
Lsp1109I	GCAGC	2 cut(s)	434, 899
LweI	GCATC	5 cut(s)	98, 600, 643, 1353, 1375
MaeI	CTAG	2 cut(s)	492, 1397
MaeII	ACGT	1 cut(s)	993
MaeIII	GTNAC	7 cut(s)	3, 199, 792, 1392, 1426, 1442, 1559
MalI	GATC	9 cut(s)	377, 450, 486, 672, 832, 918, 1315, 1340, 1582
MboI	GATC	9 cut(s)	375, 448, 484, 670, 830, 916, 1313, 1338, 1580
MflI	RGATCY	4 cut(s)	375, 484, 830, 1338
MhlI	GDGCHC	1 cut(s)	1242
MlsI	TGGCCA	1 cut(s)	442
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	1 cut(s)	1503
MmeI	TCCRAC	3 cut(s)	722, 950, 1513
MnlI	CCTC	9 cut(s)	64, 391, 525, 899, 991, 1074, 1320, 1393, 1571
Mox20I	TGGCCA	1 cut(s)	442
Mph1103I	ATGCAT	1 cut(s)	1368
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	6 cut(s)	596, 770, 893, 1293, 1413, 1463
MslI	CAYNNNNRTG	2 cut(s)	618, 714
Msp20I	TGGCCA	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	869
MspR9I	CCNGG	1 cut(s)	1126
Mva1269I	GAATGC	3 cut(s)	514, 760, 786
MvaI	CCWGG	1 cut(s)	1126
MvnI	CGCG	1 cut(s)	869
MwoI	GCNNNNNNNGC	2 cut(s)	599, 953
NdeI	CATATG	1 cut(s)	1573
NdeII	GATC	9 cut(s)	375, 448, 484, 670, 830, 916, 1313, 1338, 1580
NlaIII	CATG	4 cut(s)	719, 845, 968, 992
NlaIV	GGNNCC	2 cut(s)	315, 865
NmuCI	GTSAC	4 cut(s)	3, 199, 792, 1442
NsiI	ATGCAT	1 cut(s)	1368
NspI	RCATGY	1 cut(s)	845
PcsI	WCGNNNNNNNCGW	1 cut(s)	648
PctI	GAATGC	3 cut(s)	514, 760, 786
PfeI	GAWTC	5 cut(s)	165, 476, 824, 855, 882
PflMI	CCANNNNNTGG	1 cut(s)	811
PkrI	GCNGC	2 cut(s)	424, 889
PleI	GAGTC	1 cut(s)	1503
PpsI	GAGTC	1 cut(s)	1503
Psp124BI	GAGCTC	1 cut(s)	1242
Psp6I	CCWGG	1 cut(s)	1124
PspGI	CCWGG	1 cut(s)	1124
PspN4I	GGNNCC	2 cut(s)	315, 865
PspPI	GGNCC	2 cut(s)	67, 1064
PsuI	RGATCY	4 cut(s)	375, 484, 830, 1338
RsaI	GTAC	5 cut(s)	303, 386, 468, 1021, 1179
RsaNI	GTAC	5 cut(s)	302, 385, 467, 1020, 1178
RseI	CAYNNNNRTG	2 cut(s)	618, 714
SacI	GAGCTC	1 cut(s)	1242
SacII	CCGCGG	1 cut(s)	870
SaqAI	TTAA	6 cut(s)	596, 770, 893, 1293, 1413, 1463
SatI	GCNGC	2 cut(s)	423, 888
Sau3AI	GATC	9 cut(s)	375, 448, 484, 670, 830, 916, 1313, 1338, 1580
Sau96I	GGNCC	2 cut(s)	67, 1064
ScaI	AGTACT	1 cut(s)	468
SchI	GAGTC	1 cut(s)	1503
ScrFI	CCNGG	1 cut(s)	1126
SduI	GDGCHC	1 cut(s)	1242
SfaNI	GCATC	5 cut(s)	98, 600, 643, 1353, 1375
SfcI	CTRYAG	3 cut(s)	102, 414, 427
Sfr303I	CCGCGG	1 cut(s)	870
SgrBI	CCGCGG	1 cut(s)	870
SinI	GGWCC	2 cut(s)	67, 1064
SmiMI	CAYNNNNRTG	2 cut(s)	618, 714
SmlI	CTYRAG	2 cut(s)	335, 1451
SmoI	CTYRAG	2 cut(s)	335, 1451
SsiI	CCGC	4 cut(s)	512, 867, 869, 1554
SspMI	CTAG	2 cut(s)	492, 1397
SstI	GAGCTC	1 cut(s)	1242
StyD4I	CCNGG	1 cut(s)	1124
TaaI	ACNGT	6 cut(s)	928, 1205, 1225, 1264, 1611, 1666
TaiI	ACGT	1 cut(s)	996
TaqI	TCGA	7 cut(s)	451, 651, 919, 996, 1312, 1347, 1361
TatI	WGTACW	5 cut(s)	301, 384, 466, 1019, 1177
TfiI	GAWTC	5 cut(s)	165, 476, 824, 855, 882
Tru1I	TTAA	6 cut(s)	596, 770, 893, 1293, 1413, 1463
Tru9I	TTAA	6 cut(s)	596, 770, 893, 1293, 1413, 1463
TseFI	GTSAC	4 cut(s)	3, 199, 792, 1442
TseI	GCWGC	2 cut(s)	422, 887
Tsp45I	GTSAC	4 cut(s)	3, 199, 792, 1442
TspDTI	ATGAA	7 cut(s)	223, 405, 732, 953, 1023, 1150, 1375
Van91I	CCANNNNNTGG	1 cut(s)	811
VpaK11BI	GGWCC	2 cut(s)	67, 1064
XapI	RAATTY	2 cut(s)	635, 974
XceI	RCATGY	1 cut(s)	845
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1074
XmiI	GTMKAC	1 cut(s)	430
XspI	CTAG	2 cut(s)	492, 1397
ZraI	GACGTC	1 cut(s)	994
ZrmI	AGTACT	1 cut(s)	468
Zsp2I	ATGCAT	1 cut(s)	1368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.