Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003690.1

Orthogroup ID

OG0005977

Physical Location & Seq

Genomic Coordinates Reverse (-)

116574 .. 121064

Gene Structure 4491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003690.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

atggacgcgctcgggctggttttgcagctggcgaaagcaccactgatcgtgccgctgttgcgagttttggtggcgttgtgcttggggatgtctgtgttgctctttgtggagaaggtttacatgggaattgtcataatgttggtcaaggttttcagaagaagacctgagaagcgttggaaatgggaggcaattaaggatgatgtggagcttggcaattctgcttaccctatggttcttgtgcaaattccaatgtacaatgaaaaagaggtttatcaactttctattggggctgcatgtgggctttcatggccttctgataggatcgtagttcaagttcttgatgattcaactgacccactcattaaggatttggtggaagtagaagtgcagagatgggcaagcaaaggaataaacataaagtacgaggtcagagacaacagaaaagggtacaaagcaggggctctcaaagagggaatgaagcactcttacgtcaaacagtgtgactacgtcgccatttttgatgccgacttccaacctgagcccgattttctgtggcgcacaatcccatttctcctccacaaccctgatattgctcttgtccaagctcgctggaaatatgtaaacgctgatgagtgcttaatgaccagaatgcaagagatgtctctagattaccatttcacagtggagcaagaagttgggtctgctactcatgccttctttggtttcaatggcacagctggagtgtggagaatcacggccctcaatgaggctggaggatggaaggaccgcacaacagtggaggatatggatttagctgtccgagctagtcttagaggctggaagttcgtctatatttctgacctcaaggtgaaaaatgaattgcccagtactttcaaagcctaccgttatcagcagcaccgttggtcttgtggtccagctaatctcttccggaagatggtaatggagattttaagaaacaagaaggtgtccccattgaagaagtttcatgtgatctacagctttttctttgttcgcaaaattgtagcacatattgtcacctttgtcttctactgtgttattttaccagcaacggttttggttcctgaagttaaagttcccatttggggtgctgtatacattccttctaccattactctcctcaatgcagttggaactcctagatcactccacctattgattttctggattctctttgagaatgtaatgtccctgcaccggactaaggcaacatttataggcctgtttgaagcagggagagtaaatgaatgggtcgtcactgagaaattgggagatgctctcaagacaaaatcagctgcaaaagctcacagaaaacctcgactaaggatcggagaaagactccatttgcttgagctcattgttggactctacctcttcttctgtgggtgctatgatcttgcttatggaaagaaccgcttcttcatctaccttttcctccagtccattgcattcttcattgccggggttggttatgttggcaccttcgtccctagctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

512

Amino Acids

58.67

Weight (kDa)

9.31

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23480 AT1G23480 AT1G23480 AT1G23480 AT2G35650 AT2G35650 AT2G35650 AT5G16190
fragaria_vesca	FvH4_7g06310
malus_domestica	MD02G1245000.v1.1 MD07G1071900.v1.1
prunus_persica	Prupe.2G089900_v2.0.a1 Prupe.2G089900_v2.0.a1 Prupe.2G090000_v2.0.a1
pyrus_communis	pycom07g05480
rosa_chinensis	RchiOBHm_Chr1g0334161
rosa_laevigata	RLG00000029475
rosa_multiflora	Rmu_sc0003690.1_g000039 Rmu_sc0008401.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316980
rosa_rugosa	Rorug01G0113000
rosa_samantha	Rh1AG137000 Rh1BG104400 Rh1CG129200
rosa_wichuraiana	Rw0G019290 Rw0G020510 Rw1G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1517
AccI	GTMKAC	1 cut(s)	1134
AccII	CGCG	1 cut(s)	8
AccIII	TCCGGA	1 cut(s)	948
AciI	CCGC	3 cut(s)	53, 787, 1453
AclWI	GGATC	2 cut(s)	329, 1373
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	1125
AfaI	GTAC	4 cut(s)	254, 422, 449, 889
AfiI	CCNNNNNNNGG	5 cut(s)	766, 955, 1124, 1236, 1243
AgsI	TTSAA	6 cut(s)	332, 348, 727, 895, 997, 1268
AleI	CACNNNNGTG	1 cut(s)	794
Alw21I	GWGCWC	1 cut(s)	1395
Alw26I	GTCTC	2 cut(s)	426, 666
AlwI	GGATC	2 cut(s)	329, 1373
Ama87I	CYCGRG	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	948
AoxI	GGCC	3 cut(s)	308, 756, 1258
ApeKI	GCWGC	4 cut(s)	25, 290, 913, 1334
ApoI	RAATTY	1 cut(s)	243
Asp700I	GAANNNNTTC	1 cut(s)	1454
AspLEI	GCGC	2 cut(s)	10, 558
AspS9I	GGNCC	3 cut(s)	757, 784, 932
AsuC2I	CCSGG	1 cut(s)	1501
AsuHPI	GGTGA	2 cut(s)	880, 1048
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	2 cut(s)	784, 932
BanI	GGYRCC	1 cut(s)	1517
BanII	GRGCYC	3 cut(s)	463, 543, 1395
BarI	GAAGNNNNNNTAC	2 cut(s)	470, 502
BbsI	GAAGAC	2 cut(s)	166, 1057
Bbv12I	GWGCWC	1 cut(s)	1395
BbvI	GCAGC	4 cut(s)	37, 277, 925, 1321
BccI	CCATC	3 cut(s)	387, 771, 949
BceAI	ACGGC	1 cut(s)	771
BcnI	CCSGG	1 cut(s)	1501
BcoDI	GTCTC	2 cut(s)	426, 666
BfaI	CTAG	4 cut(s)	665, 825, 1179, 1530
BfmI	CTRYAG	1 cut(s)	1015
BisI	GCNGC	5 cut(s)	26, 53, 291, 914, 1335
BlsI	GCNGC	5 cut(s)	27, 54, 292, 915, 1336
BmcAI	AGTACT	1 cut(s)	889
Bme1390I	CCNGG	1 cut(s)	1501
Bme18I	GGWCC	2 cut(s)	784, 932
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	3 cut(s)	757, 784, 932
BmiI	GGNNCC	2 cut(s)	1101, 1519
BmrFI	CCNGG	1 cut(s)	1501
BmrI	ACTGGG	1 cut(s)	879
BmsI	GCATC	2 cut(s)	511, 1303
BmuI	ACTGGG	1 cut(s)	879
BpiI	GAAGAC	2 cut(s)	166, 1057
BplI	GAGNNNNNCTC	4 cut(s)	1302, 1334, 1362, 1394
BpmI	CTGGAG	3 cut(s)	759, 792, 1460
Bpu10I	CCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	3 cut(s)	848, 1304, 1409
BpuMI	CCSGG	1 cut(s)	1501
BsaJI	CCNNGG	1 cut(s)	1500
BsaWI	WCCGGW	2 cut(s)	948, 1236
Bsc4I	CCNNNNNNNGG	5 cut(s)	766, 955, 1124, 1236, 1243
Bse1I	ACTGG	2 cut(s)	885, 1477
Bse3DI	GCAATG	2 cut(s)	1482, 1494
BseAI	TCCGGA	1 cut(s)	948
BseDI	CCNNGG	1 cut(s)	1500
BseGI	GGATG	3 cut(s)	93, 202, 782
BseLI	CCNNNNNNNGG	5 cut(s)	766, 955, 1124, 1236, 1243
BseMI	GCAATG	2 cut(s)	1482, 1494
BseMII	CTCAG	3 cut(s)	156, 528, 1290
BseNI	ACTGG	2 cut(s)	885, 1477
BseRI	GAGGAG	2 cut(s)	563, 1148
BseXI	GCAGC	4 cut(s)	37, 277, 925, 1321
BsgI	GTGCAG	2 cut(s)	407, 1217
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	3 cut(s)	310, 758, 1260
BshNI	GGYRCC	1 cut(s)	1517
BsiHKAI	GWGCWC	1 cut(s)	1395
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	3 cut(s)	949, 1237, 1500
BslFI	GGGAC	3 cut(s)	973, 1213, 1511
BslI	CCNNNNNNNGG	5 cut(s)	766, 955, 1124, 1236, 1243
BsmAI	GTCTC	2 cut(s)	426, 666
BsmFI	GGGAC	3 cut(s)	973, 1213, 1511
BsmI	GAATGC	2 cut(s)	654, 1487
BsnI	GGCC	3 cut(s)	310, 758, 1260
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	3 cut(s)	463, 543, 1395
Bsp13I	TCCGGA	1 cut(s)	948
Bsp1407I	TGTACA	1 cut(s)	252
Bsp143I	GATC	6 cut(s)	45, 321, 1011, 1181, 1365, 1432
BspACI	CCGC	3 cut(s)	53, 787, 1453
BspANI	GGCC	3 cut(s)	310, 758, 1260
BspCNI	CTCAG	3 cut(s)	157, 529, 1291
BspEI	TCCGGA	1 cut(s)	948
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	1101, 1519
BspPI	GGATC	2 cut(s)	329, 1373
BspT107I	GGYRCC	1 cut(s)	1517
BsrDI	GCAATG	2 cut(s)	1482, 1494
BsrGI	TGTACA	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	885, 1477
BssECI	CCNNGG	1 cut(s)	1500
BssMI	GATC	6 cut(s)	45, 321, 1011, 1181, 1365, 1432
BssNAI	GTATAC	1 cut(s)	1135
Bst1107I	GTATAC	1 cut(s)	1135
Bst4CI	ACNGT	7 cut(s)	498, 682, 796, 905, 920, 1073, 1093
Bst6I	CTCTTC	2 cut(s)	950, 1418
BstAUI	TGTACA	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	30, 400, 607
BstDEI	CTNAG	6 cut(s)	165, 537, 830, 1242, 1299, 1361
BstENI	CCTNNNNNAGG	1 cut(s)	764
BstF5I	GGATG	3 cut(s)	93, 202, 782
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	10, 558
BstKTI	GATC	6 cut(s)	48, 324, 1014, 1184, 1368, 1435
BstMAI	GTCTC	2 cut(s)	426, 666
BstMBI	GATC	6 cut(s)	45, 321, 1011, 1181, 1365, 1432
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 58, 307, 710, 821, 1340
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	1499
BstSFI	CTRYAG	1 cut(s)	1015
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	4 cut(s)	37, 277, 925, 1321
BstV2I	GAAGAC	2 cut(s)	166, 1057
BstZ17I	GTATAC	1 cut(s)	1135
BsuRI	GGCC	3 cut(s)	310, 758, 1260
BtsCI	GGATG	3 cut(s)	93, 202, 782
BtsIMutI	CAGTG	5 cut(s)	41, 503, 687, 801, 1296
Cac8I	GCNNGC	3 cut(s)	30, 400, 607
CfoI	GCGC	2 cut(s)	10, 558
Cfr13I	GGNCC	3 cut(s)	757, 784, 932
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	4 cut(s)	253, 421, 448, 888
CviAII	CATG	5 cut(s)	121, 294, 306, 710, 1007
CviQI	GTAC	4 cut(s)	253, 421, 448, 888
DdeI	CTNAG	6 cut(s)	165, 537, 830, 1242, 1299, 1361
DpnI	GATC	6 cut(s)	47, 323, 1013, 1183, 1367, 1434
DpnII	GATC	6 cut(s)	45, 321, 1011, 1181, 1365, 1432
Eam1104I	CTCTTC	2 cut(s)	950, 1418
EarI	CTCTTC	2 cut(s)	950, 1418
Ecl136II	GAGCTC	1 cut(s)	1393
Eco147I	AGGCCT	1 cut(s)	1260
Eco24I	GRGCYC	3 cut(s)	463, 543, 1395
Eco47I	GGWCC	2 cut(s)	784, 932
Eco53kI	GAGCTC	1 cut(s)	1393
Eco57I	CTGAAG	1 cut(s)	1125
Eco88I	CYCGRG	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	1393
EcoNI	CCTNNNNNAGG	1 cut(s)	764
EcoT38I	GRGCYC	3 cut(s)	463, 543, 1395
FaeI	CATG	5 cut(s)	124, 297, 309, 713, 1010
FalI	AAGNNNNNCTT	2 cut(s)	1439, 1471
FaqI	GGGAC	3 cut(s)	973, 1213, 1511
FatI	CATG	5 cut(s)	120, 293, 305, 709, 1006
FblI	GTMKAC	1 cut(s)	1134
Fnu4HI	GCNGC	5 cut(s)	26, 53, 291, 914, 1335
FokI	GGATG	3 cut(s)	100, 209, 789
FriOI	GRGCYC	3 cut(s)	463, 543, 1395
Fsp4HI	GCNGC	5 cut(s)	26, 53, 291, 914, 1335
FspBI	CTAG	4 cut(s)	665, 825, 1179, 1530
GlaI	GCGC	2 cut(s)	9, 557
GluI	GCNGC	5 cut(s)	26, 53, 291, 914, 1335
GsuI	CTGGAG	3 cut(s)	759, 792, 1460
HaeIII	GGCC	3 cut(s)	310, 758, 1260
HapII	CCGG	3 cut(s)	949, 1237, 1500
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	2 cut(s)	10, 558
Hin1II	CATG	5 cut(s)	124, 297, 309, 713, 1010
Hin6I	GCGC	2 cut(s)	8, 556
HinP1I	GCGC	2 cut(s)	8, 556
HinfI	GANTC	5 cut(s)	344, 750, 1207, 1377, 1404
HpaII	CCGG	3 cut(s)	949, 1237, 1500
HphI	GGTGA	2 cut(s)	880, 1048
Hpy166II	GTNNAC	3 cut(s)	118, 622, 1135
Hpy188I	TCNGA	6 cut(s)	155, 316, 431, 821, 859, 1370
Hpy188III	TCNNGA	6 cut(s)	338, 665, 949, 1103, 1204, 1321
Hpy8I	GTNNAC	3 cut(s)	118, 622, 1135
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	7 cut(s)	106, 321, 724, 775, 976, 1152, 1531
HpyCH4III	ACNGT	7 cut(s)	498, 682, 796, 905, 920, 1073, 1093
HpyCH4IV	ACGT	2 cut(s)	489, 507
HpyCH4V	TGCA	9 cut(s)	25, 241, 293, 388, 652, 1166, 1234, 1337, 1487
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 58, 307, 710, 821, 1340
HpyF3I	CTNAG	6 cut(s)	165, 537, 830, 1242, 1299, 1361
HpySE526I	ACGT	2 cut(s)	489, 507
Hsp92II	CATG	5 cut(s)	124, 297, 309, 713, 1010
HspAI	GCGC	2 cut(s)	8, 556
Kpn2I	TCCGGA	1 cut(s)	948
Kzo9I	GATC	6 cut(s)	45, 321, 1011, 1181, 1365, 1432
LmnI	GCTCC	2 cut(s)	205, 685
Lsp1109I	GCAGC	4 cut(s)	37, 277, 925, 1321
LweI	GCATC	2 cut(s)	511, 1303
MaeI	CTAG	4 cut(s)	665, 825, 1179, 1530
MaeII	ACGT	2 cut(s)	489, 507
MaeIII	GTNAC	3 cut(s)	500, 1054, 1294
MalI	GATC	6 cut(s)	47, 323, 1013, 1183, 1367, 1434
MboI	GATC	6 cut(s)	45, 321, 1011, 1181, 1365, 1432
MhlI	GDGCHC	3 cut(s)	463, 543, 1395
MluCI	AATT	7 cut(s)	126, 189, 214, 243, 878, 1038, 1304
MlyI	GAGTC	2 cut(s)	1371, 1398
MmeI	TCCRAC	4 cut(s)	155, 556, 1150, 1381
MroI	TCCGGA	1 cut(s)	948
MroXI	GAANNNNTTC	1 cut(s)	1454
MseI	TTAA	5 cut(s)	192, 363, 638, 971, 1110
MslI	CAYNNNNRTG	1 cut(s)	794
MspA1I	CMGCKG	4 cut(s)	28, 55, 737, 1334
MspI	CCGG	3 cut(s)	949, 1237, 1500
MspR9I	CCNGG	1 cut(s)	1501
Mva1269I	GAATGC	2 cut(s)	654, 1487
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	6 cut(s)	22, 58, 307, 710, 821, 1340
NciI	CCSGG	1 cut(s)	1501
NdeII	GATC	6 cut(s)	45, 321, 1011, 1181, 1365, 1432
NlaIII	CATG	5 cut(s)	124, 297, 309, 713, 1010
NlaIV	GGNNCC	2 cut(s)	1101, 1519
NmuCI	GTSAC	3 cut(s)	500, 1054, 1294
NspI	RCATGY	1 cut(s)	297
OliI	CACNNNNGTG	1 cut(s)	794
PceI	AGGCCT	1 cut(s)	1260
PctI	GAATGC	2 cut(s)	654, 1487
PdmI	GAANNNNTTC	1 cut(s)	1454
PfeI	GAWTC	3 cut(s)	344, 750, 1207
PflFI	GACNNNGTC	1 cut(s)	506
PkrI	GCNGC	5 cut(s)	27, 54, 292, 915, 1336
PleI	GAGTC	2 cut(s)	1371, 1398
PpsI	GAGTC	2 cut(s)	1371, 1398
Psp124BI	GAGCTC	1 cut(s)	1395
PspN4I	GGNNCC	2 cut(s)	1101, 1519
PspPI	GGNCC	3 cut(s)	757, 784, 932
PsrI	GAACNNNNNNTAC	2 cut(s)	318, 350
PsyI	GACNNNGTC	1 cut(s)	506
PvuII	CAGCTG	3 cut(s)	28, 737, 1334
RsaI	GTAC	4 cut(s)	254, 422, 449, 889
RsaNI	GTAC	4 cut(s)	253, 421, 448, 888
RseI	CAYNNNNRTG	1 cut(s)	794
SacI	GAGCTC	1 cut(s)	1395
SaqAI	TTAA	5 cut(s)	192, 363, 638, 971, 1110
SatI	GCNGC	5 cut(s)	26, 53, 291, 914, 1335
Sau3AI	GATC	6 cut(s)	45, 321, 1011, 1181, 1365, 1432
Sau96I	GGNCC	3 cut(s)	757, 784, 932
ScaI	AGTACT	1 cut(s)	889
SchI	GAGTC	2 cut(s)	1371, 1398
ScrFI	CCNGG	1 cut(s)	1501
SduI	GDGCHC	3 cut(s)	463, 543, 1395
SfaNI	GCATC	2 cut(s)	511, 1303
SfcI	CTRYAG	1 cut(s)	1015
SinI	GGWCC	2 cut(s)	784, 932
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	3 cut(s)	863, 1319, 1388
SmoI	CTYRAG	3 cut(s)	863, 1319, 1388
Sse9I	AATT	7 cut(s)	126, 189, 214, 243, 878, 1038, 1304
SseBI	AGGCCT	1 cut(s)	1260
SsiI	CCGC	3 cut(s)	53, 787, 1453
SspMI	CTAG	4 cut(s)	665, 825, 1179, 1530
SstI	GAGCTC	1 cut(s)	1395
StuI	AGGCCT	1 cut(s)	1260
StyD4I	CCNGG	1 cut(s)	1499
TaaI	ACNGT	7 cut(s)	498, 682, 796, 905, 920, 1073, 1093
TaiI	ACGT	2 cut(s)	492, 510
TaqI	TCGA	1 cut(s)	1357
TasI	AATT	7 cut(s)	126, 189, 214, 243, 878, 1038, 1304
TatI	WGTACW	2 cut(s)	252, 887
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	3 cut(s)	344, 750, 1207
Tru1I	TTAA	5 cut(s)	192, 363, 638, 971, 1110
Tru9I	TTAA	5 cut(s)	192, 363, 638, 971, 1110
TscAI	CASTG	5 cut(s)	48, 503, 687, 801, 1303
TseFI	GTSAC	3 cut(s)	500, 1054, 1294
TseI	GCWGC	4 cut(s)	25, 290, 913, 1334
Tsp45I	GTSAC	3 cut(s)	500, 1054, 1294
TspDTI	ATGAA	8 cut(s)	273, 294, 491, 891, 995, 1299, 1450, 1483
TspRI	CASTG	5 cut(s)	48, 503, 687, 801, 1303
Tth111I	GACNNNGTC	1 cut(s)	506
VpaK11BI	GGWCC	2 cut(s)	784, 932
XagI	CCTNNNNNAGG	1 cut(s)	764
XapI	RAATTY	1 cut(s)	243
XbaI	TCTAGA	1 cut(s)	664
XceI	RCATGY	1 cut(s)	297
XmiI	GTMKAC	1 cut(s)	1134
XmnI	GAANNNNTTC	1 cut(s)	1454
XspI	CTAG	4 cut(s)	665, 825, 1179, 1530
ZrmI	AGTACT	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.