Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005977

Physical Location & Seq

Genomic Coordinates Reverse (-)

20070991 .. 20072870

Gene Structure 1880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0113000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGAAACATTATAACAAGAGCAACCAGAAATTCAAATTTGGAGAGAAGGAAGTGGAAATAACAGAGGATGATGTAAAGGTACTGTTTGGCCTGCCTACTGAAGGAACAGTACGTGATCTGAACATGAAGTTGAGCAGGGATGAGCGTGAAGACTGGAACTCGACACTGGAACTCGAGCTTAAAAAGGATAAGACAGATAAAGATCCGAAGAATGGGCCAGATCCCAAAAAGATAGCCTCACTGATAATCATACATAGACAACATAAATCAGTTCAATTGGCCGGGGATGATTATTACTTTTCTACTGGATGGAATCCACAAGCACATGAAAGACAAGCCATCGACTCTGTCCGGCTGCCTGCTTTTAATCTACTACTGGTTCCTGGAAAAGACGAAGATCAGGAACTGCATTCCGGGGAAGGAGAAGGAAAAGCCAAGACATTAATCAAAGGAGGACCGTGGTCCGATGATGAAGAGCTTGATGACTTTTTTGAGGAGGTCTATGAGGATCAAGAGACCCCGTGTTTCAACAAACGGGTTCCCCAAGCAACCCAACAAGAACAAGAAGAATTGTTAAGGCTTCAGGGGAATGTCAGAGAAGAGATGGAAGCAATGCTCAGTGAGGAGACTGCAAGGGAAAGCCTAGAGGACAAAGTGAAAAGGCTGGCACAAGAGAACCAGCAGCTATCAAAAAAAAATCGTGGAATGATGGCCAAGCTGAAAGCAGCAGATGAGAAGATAGAGAGCCTAGAGAAAGAAAAACGTGTTCTGTTCAGAAAGCTGAAAAGAAAAGAACACTCCGGAAAGGCTGATGATGGGGAAACCGAAGCTGCGGGAACAAAACCTGATTTTGAGCACGATACAACAGAACAACTAGCAGAAGAACAAGAAAATCTTGACAAACTGGCCTGCAGCATTGTTCCATTTTCACCAGAGAAGCAGCAAGGAAAACAAGCTAAGTTTGAAGAAGGACTGATAAGAGCAAAGATATTTGAAGTTGTTCCAATTTCTTGTATGGAACCAGAGCGGATGCATTCCATAGAGCAAAATGTCAAATTCAACAAGAGGAAAGGTGCAACAAAAGAGAAGCAGCCAGATATTGAGTTCAGCACACCTGAAATGCTGAAAACAGAAACGATGAAGTCATATGGAAAGAAGGCAAAGATGGATAAAGAAGAACCAAAGGAAAGGAAGATTTTGGCAGGCAAGCAACCAATAAGAGCCCAAGAGAACCAAATAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

414

Amino Acids

47.7

Weight (kDa)

5.42

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23480 AT1G23480 AT1G23480 AT1G23480 AT2G35650 AT2G35650 AT2G35650 AT5G16190
fragaria_vesca	FvH4_7g06310
malus_domestica	MD02G1245000.v1.1 MD07G1071900.v1.1
prunus_persica	Prupe.2G089900_v2.0.a1 Prupe.2G089900_v2.0.a1 Prupe.2G090000_v2.0.a1
pyrus_communis	pycom07g05480
rosa_chinensis	RchiOBHm_Chr1g0334161
rosa_laevigata	RLG00000029475
rosa_multiflora	Rmu_sc0003690.1_g000039 Rmu_sc0008401.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316980
rosa_rugosa	Rorug01G0113000
rosa_samantha	Rh1AG137000 Rh1BG104400 Rh1CG129200
rosa_wichuraiana	Rw0G019290 Rw0G020510 Rw1G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AccBSI	CCGCTC	1 cut(s)	1027
AccIII	TCCGGA	1 cut(s)	800
AciI	CCGC	2 cut(s)	833, 1027
AclWI	GGATC	3 cut(s)	197, 215, 516
AcoI	YGGCCR	2 cut(s)	279, 711
AcsI	RAATTY	3 cut(s)	29, 35, 1055
AcuI	CTGAAG	2 cut(s)	120, 566
AfaI	GTAC	2 cut(s)	81, 111
AfiI	CCNNNNNNNGG	2 cut(s)	101, 212
AflIII	ACRYGT	1 cut(s)	763
AgsI	TTSAA	6 cut(s)	34, 275, 529, 965, 995, 1060
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	7 cut(s)	178, 478, 685, 718, 781, 830, 956
AluI	AGCT	7 cut(s)	178, 478, 685, 718, 781, 830, 956
Alw21I	GWGCWC	1 cut(s)	858
Alw26I	GTCTC	2 cut(s)	509, 620
AlwI	GGATC	3 cut(s)	197, 215, 516
AlwNI	CAGNNNCTG	1 cut(s)	406
Ama87I	CYCGRG	1 cut(s)	173
Aor13HI	TCCGGA	1 cut(s)	800
AoxI	GGCC	5 cut(s)	88, 215, 279, 711, 906
ApeKI	GCWGC	7 cut(s)	355, 682, 725, 830, 912, 940, 1090
ApoI	RAATTY	3 cut(s)	29, 35, 1055
AseI	ATTAAT	1 cut(s)	443
Asp700I	GAANNNNTTC	1 cut(s)	999
AspS9I	GGNCC	3 cut(s)	215, 455, 462
AsuC2I	CCSGG	2 cut(s)	283, 415
AsuHPI	GGTGA	1 cut(s)	921
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	2 cut(s)	455, 462
BalI	TGGCCA	1 cut(s)	713
BanII	GRGCYC	1 cut(s)	1225
BarI	GAAGNNNNNNTAC	2 cut(s)	93, 125
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	858
BbvI	GCAGC	7 cut(s)	342, 694, 737, 817, 924, 952, 1102
BccI	CCATC	6 cut(s)	303, 347, 598, 703, 809, 1159
BciT130I	CCWGG	1 cut(s)	384
BcnI	CCSGG	2 cut(s)	283, 415
BcoDI	GTCTC	2 cut(s)	509, 620
BfaI	CTAG	3 cut(s)	644, 749, 875
BfmI	CTRYAG	1 cut(s)	910
BisI	GCNGC	7 cut(s)	356, 683, 726, 831, 913, 941, 1091
BlsI	GCNGC	7 cut(s)	357, 684, 727, 832, 914, 942, 1092
Bme1390I	CCNGG	3 cut(s)	283, 384, 415
Bme18I	GGWCC	2 cut(s)	455, 462
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	215, 455, 462
BmiI	GGNNCC	3 cut(s)	381, 540, 1020
BmrFI	CCNGG	3 cut(s)	283, 384, 415
BmsI	GCATC	1 cut(s)	1020
BoxI	GACNNNNGTC	1 cut(s)	460
BpiI	GAAGAC	1 cut(s)	156
BpuMI	CCSGG	2 cut(s)	283, 415
BsaAI	YACGTR	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	3 cut(s)	282, 414, 458
BsaWI	WCCGGW	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 212
Bse1I	ACTGG	5 cut(s)	158, 171, 310, 381, 909
Bse3DI	GCAATG	1 cut(s)	618
Bse8I	GATNNNNATC	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	800
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	282, 414, 458
BseGI	GGATG	5 cut(s)	73, 145, 292, 314, 1035
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	101, 212
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	1 cut(s)	631
BseNI	ACTGG	5 cut(s)	158, 171, 310, 381, 909
BseRI	GAGGAG	2 cut(s)	509, 638
BseXI	GCAGC	7 cut(s)	342, 694, 737, 817, 924, 952, 1102
BshFI	GGCC	5 cut(s)	90, 217, 281, 713, 908
BsiHKAI	GWGCWC	1 cut(s)	858
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	4 cut(s)	282, 352, 414, 801
BslI	CCNNNNNNNGG	2 cut(s)	101, 212
BsmAI	GTCTC	2 cut(s)	509, 620
BsmI	GAATGC	2 cut(s)	409, 1033
BsnI	GGCC	5 cut(s)	90, 217, 281, 713, 908
Bso31I	GGTCTC	1 cut(s)	509
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	858, 1225
Bsp13I	TCCGGA	1 cut(s)	800
Bsp143I	GATC	5 cut(s)	115, 202, 220, 397, 508
BspACI	CCGC	2 cut(s)	833, 1027
BspANI	GGCC	5 cut(s)	90, 217, 281, 713, 908
BspCNI	CTCAG	1 cut(s)	630
BspEI	TCCGGA	1 cut(s)	800
BspLI	GGNNCC	3 cut(s)	381, 540, 1020
BspMAI	CTGCAG	1 cut(s)	914
BspPI	GGATC	3 cut(s)	197, 215, 516
BspQI	GCTCTTC	1 cut(s)	468
BspTNI	GGTCTC	1 cut(s)	509
BsrBI	CCGCTC	1 cut(s)	1027
BsrDI	GCAATG	1 cut(s)	618
BsrI	ACTGG	5 cut(s)	158, 171, 310, 381, 909
BssECI	CCNNGG	3 cut(s)	282, 414, 458
BssMI	GATC	5 cut(s)	115, 202, 220, 397, 508
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	84, 109, 459
Bst6I	CTCTTC	2 cut(s)	468, 594
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	6 cut(s)	92, 360, 666, 910, 1204, 1208
BstDEI	CTNAG	2 cut(s)	617, 957
BstDSI	CCRYGG	1 cut(s)	458
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	5 cut(s)	73, 145, 292, 314, 1035
BstKTI	GATC	5 cut(s)	118, 205, 223, 400, 511
BstMAI	GTCTC	2 cut(s)	509, 620
BstMBI	GATC	5 cut(s)	115, 202, 220, 397, 508
BstNI	CCWGG	1 cut(s)	384
BstPAI	GACNNNNGTC	1 cut(s)	460
BstSCI	CCNGG	3 cut(s)	281, 382, 413
BstSFI	CTRYAG	1 cut(s)	910
BstV1I	GCAGC	7 cut(s)	342, 694, 737, 817, 924, 952, 1102
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	202, 220
BstYI	RGATCY	2 cut(s)	202, 220
BsuRI	GGCC	5 cut(s)	90, 217, 281, 713, 908
BtgI	CCRYGG	1 cut(s)	458
BtsCI	GGATG	5 cut(s)	73, 145, 292, 314, 1035
BtsIMutI	CAGTG	3 cut(s)	164, 239, 625
Cac8I	GCNNGC	6 cut(s)	92, 360, 666, 910, 1204, 1208
CaiI	CAGNNNCTG	1 cut(s)	406
Cfr13I	GGNCC	3 cut(s)	215, 455, 462
Csp6I	GTAC	2 cut(s)	80, 110
CviAII	CATG	2 cut(s)	124, 326
CviQI	GTAC	2 cut(s)	80, 110
DdeI	CTNAG	2 cut(s)	617, 957
DpnI	GATC	5 cut(s)	117, 204, 222, 399, 510
DpnII	GATC	5 cut(s)	115, 202, 220, 397, 508
EaeI	YGGCCR	2 cut(s)	279, 711
Eam1104I	CTCTTC	2 cut(s)	468, 594
EarI	CTCTTC	2 cut(s)	468, 594
Eco24I	GRGCYC	1 cut(s)	1225
Eco31I	GGTCTC	1 cut(s)	509
Eco47I	GGWCC	2 cut(s)	455, 462
Eco57I	CTGAAG	2 cut(s)	120, 566
Eco88I	CYCGRG	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	1035
EcoT38I	GRGCYC	1 cut(s)	1225
FaeI	CATG	2 cut(s)	127, 329
FalI	AAGNNNNNCTT	2 cut(s)	879, 911
FatI	CATG	2 cut(s)	123, 325
FauI	CCCGC	1 cut(s)	826
FauNDI	CATATG	1 cut(s)	1147
Fnu4HI	GCNGC	7 cut(s)	356, 683, 726, 831, 913, 941, 1091
FokI	GGATG	5 cut(s)	80, 152, 299, 321, 1042
FriOI	GRGCYC	1 cut(s)	1225
Fsp4HI	GCNGC	7 cut(s)	356, 683, 726, 831, 913, 941, 1091
FspBI	CTAG	3 cut(s)	644, 749, 875
GluI	GCNGC	7 cut(s)	356, 683, 726, 831, 913, 941, 1091
HaeIII	GGCC	5 cut(s)	90, 217, 281, 713, 908
HapII	CCGG	4 cut(s)	282, 352, 414, 801
Hin1II	CATG	2 cut(s)	127, 329
HinfI	GANTC	2 cut(s)	313, 344
HpaII	CCGG	4 cut(s)	282, 352, 414, 801
HphI	GGTGA	1 cut(s)	921
Hpy188I	TCNGA	5 cut(s)	120, 207, 466, 596, 776
Hpy188III	TCNNGA	4 cut(s)	401, 512, 801, 896
HpyAV	CCTTC	6 cut(s)	40, 95, 413, 419, 962, 1150
HpyCH4III	ACNGT	3 cut(s)	84, 109, 459
HpyCH4IV	ACGT	2 cut(s)	112, 763
HpyCH4V	TGCA	5 cut(s)	409, 632, 912, 1033, 1076
HpyF3I	CTNAG	2 cut(s)	617, 957
HpySE526I	ACGT	2 cut(s)	112, 763
Hsp92II	CATG	2 cut(s)	127, 329
Kpn2I	TCCGGA	1 cut(s)	800
Kzo9I	GATC	5 cut(s)	115, 202, 220, 397, 508
LguI	GCTCTTC	1 cut(s)	468
Lsp1109I	GCAGC	7 cut(s)	342, 694, 737, 817, 924, 952, 1102
LweI	GCATC	1 cut(s)	1020
MaeI	CTAG	3 cut(s)	644, 749, 875
MaeII	ACGT	2 cut(s)	112, 763
MalI	GATC	5 cut(s)	117, 204, 222, 399, 510
MbiI	CCGCTC	1 cut(s)	1027
MboI	GATC	5 cut(s)	115, 202, 220, 397, 508
MfeI	CAATTG	1 cut(s)	275
MflI	RGATCY	2 cut(s)	202, 220
MhlI	GDGCHC	2 cut(s)	858, 1225
MlsI	TGGCCA	1 cut(s)	713
MluCI	AATT	6 cut(s)	29, 35, 275, 569, 1005, 1055
MluNI	TGGCCA	1 cut(s)	713
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	9 cut(s)	58, 247, 446, 487, 490, 499, 616, 640, 1059
Mox20I	TGGCCA	1 cut(s)	713
Mph1103I	ATGCAT	1 cut(s)	1035
MroI	TCCGGA	1 cut(s)	800
MroXI	GAANNNNTTC	1 cut(s)	999
MscI	TGGCCA	1 cut(s)	713
MseI	TTAA	4 cut(s)	180, 366, 443, 575
Msp20I	TGGCCA	1 cut(s)	713
MspI	CCGG	4 cut(s)	282, 352, 414, 801
MspR9I	CCNGG	3 cut(s)	283, 384, 415
MunI	CAATTG	1 cut(s)	275
Mva1269I	GAATGC	2 cut(s)	409, 1033
MvaI	CCWGG	1 cut(s)	384
NciI	CCSGG	2 cut(s)	283, 415
NdeI	CATATG	1 cut(s)	1147
NdeII	GATC	5 cut(s)	115, 202, 220, 397, 508
NlaIII	CATG	2 cut(s)	127, 329
NlaIV	GGNNCC	3 cut(s)	381, 540, 1020
NsiI	ATGCAT	1 cut(s)	1035
PaeR7I	CTCGAG	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	468
PctI	GAATGC	2 cut(s)	409, 1033
PdmI	GAANNNNTTC	1 cut(s)	999
PfeI	GAWTC	1 cut(s)	313
PflFI	GACNNNGTC	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	382
PkrI	GCNGC	7 cut(s)	357, 684, 727, 832, 914, 942, 1092
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	113
PshAI	GACNNNNGTC	1 cut(s)	460
PshBI	ATTAAT	1 cut(s)	443
PsiI	TTATAA	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	3 cut(s)	381, 540, 1020
PspPI	GGNCC	3 cut(s)	215, 455, 462
PspXI	VCTCGAGB	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	914
PstNI	CAGNNNCTG	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	202, 220
PsyI	GACNNNGTC	1 cut(s)	347
RsaI	GTAC	2 cut(s)	81, 111
RsaNI	GTAC	2 cut(s)	80, 110
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	4 cut(s)	180, 366, 443, 575
SatI	GCNGC	7 cut(s)	356, 683, 726, 831, 913, 941, 1091
Sau3AI	GATC	5 cut(s)	115, 202, 220, 397, 508
Sau96I	GGNCC	3 cut(s)	215, 455, 462
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	3 cut(s)	283, 384, 415
SduI	GDGCHC	2 cut(s)	858, 1225
SfaNI	GCATC	1 cut(s)	1020
SfcI	CTRYAG	1 cut(s)	910
Sfr274I	CTCGAG	1 cut(s)	173
SinI	GGWCC	2 cut(s)	455, 462
SlaI	CTCGAG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	6 cut(s)	29, 35, 275, 569, 1005, 1055
SsiI	CCGC	2 cut(s)	833, 1027
SspMI	CTAG	3 cut(s)	644, 749, 875
StyD4I	CCNGG	3 cut(s)	281, 382, 413
TaaI	ACNGT	3 cut(s)	84, 109, 459
TaiI	ACGT	2 cut(s)	115, 766
TaqI	TCGA	3 cut(s)	161, 174, 342
TasI	AATT	6 cut(s)	29, 35, 275, 569, 1005, 1055
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	4 cut(s)	180, 366, 443, 575
Tru9I	TTAA	4 cut(s)	180, 366, 443, 575
TscAI	CASTG	3 cut(s)	171, 246, 625
TseI	GCWGC	7 cut(s)	355, 682, 725, 830, 912, 940, 1090
TspDTI	ATGAA	5 cut(s)	17, 140, 342, 486, 1154
TspRI	CASTG	3 cut(s)	171, 246, 625
Tth111I	GACNNNGTC	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	455, 462
VspI	ATTAAT	1 cut(s)	443
XagI	CCTNNNNNAGG	1 cut(s)	99
XapI	RAATTY	3 cut(s)	29, 35, 1055
XhoI	CTCGAG	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	999
XspI	CTAG	3 cut(s)	644, 749, 875
Zsp2I	ATGCAT	1 cut(s)	1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.