AT5G16190

Glucomannan 4-beta-mannosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005977
Physical Location & Seq
Reverse (-)
5283447 .. 5286842
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16190.1

Sequence Viewer

Length: 1332 bp
ATGCAAGAGGACTTGGAGCTCGGAAATCAAAACTTTCCCATGGTTCTTGTCCAAATCCCAATGTACAACGAACGAGAGGTGTTTAAGTTATCCATTGGTGCTGCTTGCAGACTCATATGGCCATTGGATCGACTAATCGTTCAAGTTTTAGATGATTCCACTGATCCCACCATCATGGAAATGGTAAGCACAGAGTGTGGAAAATGGGCAACCAAAGGCATAAACATAAAATGTGAGAGGAGAGACAATAGAAATGGCTATAAGGCTGGAGCTCTTAAACAAGGTATGAGGCATAGTTACGTCAAAACATGCACCTACATTGCAATCTTCGATGCTGATTTTCAGCCAGAGCCCGACTACCTCGAACGCACTGTCCCATTTCTTATCCACAATCCCGAACTCGCTCTTGTTCAAGCTCGATGGAAATTTGTGAACGCAAAGAAGTGCTTGATGACTAGGATGCAGGAGATGTCCCTCAATTACCATTTCACGGCAGAGCAAGAATCCGGATCCACTAGACATGCCTTCTTTGGCTTTAATGGGACTGCGGGTGTATGGAGACTGGCGGCGATGGAAGAAGCTGGTGGTTGGAAAGACCGGACCACCGTAGAGGACATGGACTTGGCCGTTCGTGTAGGTCTACACGGCTGGAAATTTGTCTTTGTCAACGATGTTTCGGTGAAAAGTGAGCTACCAAGCCAATTTAAGGCATTCAGATTCCAGCAACATCGATGGTCATGCGGTCCAGCTAATCTCTTCAGAAAAATGACTATGGAAATTATTCGCAATAAGAGAGTGACGATTTGGAAGAAATTGTATGTGATCTATAGTTTCTTTTTCGTAAGGAAGATCATAGTCCATTTCTTCACTTTCTTCTTCTATTGTTTCATTCTTCCTACGAGCGTATTCTTTCCCGAAGTCAACATTCCGACTTGGTCAACCGTTTATTTTCCTTTTATGATCACTCTATTCAATGCCATTGCCACACCAAGATCTTTCTACCTCGTGATTTTTTGGGTCTTATTCGAGAATGTAATGGCTATGCATCGGACCAAAGGCACTTTCATCGGTTTACTTGAAGGAGGGAGAGTTAACGAATGGGTCGTCACCGAGAAATTAGGTGATGCGCTTGAGACTAAGTTACTTCCCCAAGTAAGAAAACCTCGCAACGGGTTTCTCGAAAGGATAAACTCAAAAGAGATGATGGTGGGGATATACATATTGTGCTGTGCATCATATAACCTTGTCTTTGGGAAGACAGTGTTATATATCTATCTTTACATGCAGGCTCTTGCTTTTATTATTGCCGGAATTGGTTTTATAGGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

443

Amino Acids

51.47

Weight (kDa)

9.13

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_3 PF13641 15 - 248 2.6e-15 Glycosyltransferase like family 2
Glycos_transf_2 PF00535 18 - 166 1.6e-13 Glycosyl transferase family 2
Glyco_transf_21 PF13506 105 - 246 3.9e-06 Glycosyl transferase family 21
Glyco_trans_2_3 PF13632 106 - 322 4.3e-22 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 640
AccIII TCCGGA 1 cut(s) 506
AciI CCGC 3 cut(s) 548, 566, 741
AclWI GGATC 4 cut(s) 135, 158, 504, 517
AcoI YGGCCR 2 cut(s) 119, 624
AcsI RAATTY 2 cut(s) 425, 653
AcuI CTGAAG 1 cut(s) 742
AdeI CACNNNGTG 1 cut(s) 195
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 3 cut(s) 490, 706, 1169
AgsI TTSAA 4 cut(s) 143, 413, 973, 1079
AjuI GAANNNNNNNTTGG 2 cut(s) 1046, 1078
AloI GAACNNNNNNTCC 2 cut(s) 357, 389
AluBI AGCT 6 cut(s) 19, 272, 416, 581, 691, 749
AluI AGCT 6 cut(s) 19, 272, 416, 581, 691, 749
Alw21I GWGCWC 2 cut(s) 21, 274
Alw26I GTCTC 3 cut(s) 237, 553, 1127
AlwI GGATC 4 cut(s) 135, 158, 504, 517
Aor13HI TCCGGA 1 cut(s) 506
AoxI GGCC 2 cut(s) 119, 624
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 2 cut(s) 425, 653
ArsI GACNNNNNNTTYG 4 cut(s) 357, 389, 1089, 1121
Asp700I GAANNNNTTC 1 cut(s) 780
AspLEI GCGC 1 cut(s) 1129
AspS9I GGNCC 3 cut(s) 600, 743, 1050
AsuHPI GGTGA 3 cut(s) 691, 1099, 1133
AvaII GGWCC 3 cut(s) 600, 743, 1050
BalI TGGCCA 1 cut(s) 121
BamHI GGATCC 1 cut(s) 509
BanII GRGCYC 3 cut(s) 21, 274, 354
BauI CACGAG 1 cut(s) 1004
BbsI GAAGAC 1 cut(s) 1262
Bbv12I GWGCWC 2 cut(s) 21, 274
BbvI GCAGC 1 cut(s) 88
BccI CCATC 5 cut(s) 179, 414, 565, 726, 1198
BceAI ACGGC 3 cut(s) 507, 611, 661
BcgI CGANNNNNNTGC 4 cut(s) 720, 754, 1048, 1082
BclI TGATCA 1 cut(s) 960
BcoDI GTCTC 3 cut(s) 237, 553, 1127
BfaI CTAG 2 cut(s) 456, 516
BfmI CTRYAG 1 cut(s) 826
BglII AGATCT 1 cut(s) 992
BisI GCNGC 2 cut(s) 102, 567
BlsI GCNGC 2 cut(s) 103, 568
Bme18I GGWCC 3 cut(s) 600, 743, 1050
BmgT120I GGNCC 3 cut(s) 600, 743, 1050
BmiI GGNNCC 1 cut(s) 511
BmsI GCATC 5 cut(s) 322, 450, 1054, 1114, 1241
BpiI GAAGAC 1 cut(s) 1262
BpmI CTGGAG 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 1151
Bsa29I ATCGAT 1 cut(s) 730
BsaJI CCNNGG 1 cut(s) 39
BsaWI WCCGGW 2 cut(s) 506, 597
BsaXI ACNNNNNCTCC 2 cut(s) 1074, 1104
Bsc4I CCNNNNNNNGG 3 cut(s) 490, 706, 1169
Bse1I ACTGG 1 cut(s) 567
Bse3DI GCAATG 2 cut(s) 318, 978
BseAI TCCGGA 1 cut(s) 506
BseCI ATCGAT 1 cut(s) 730
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 465
BseLI CCNNNNNNNGG 3 cut(s) 490, 706, 1169
BseMI GCAATG 2 cut(s) 318, 978
BseNI ACTGG 1 cut(s) 567
BseRI GAGGAG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 2 cut(s) 121, 626
BshVI ATCGAT 1 cut(s) 730
BsiHKAI GWGCWC 2 cut(s) 21, 274
BsiSI CCGG 3 cut(s) 507, 598, 1308
BslFI GGGAC 3 cut(s) 359, 457, 556
BslI CCNNNNNNNGG 3 cut(s) 490, 706, 1169
BsmAI GTCTC 3 cut(s) 237, 553, 1127
BsmFI GGGAC 3 cut(s) 359, 457, 556
BsmI GAATGC 1 cut(s) 710
BsnI GGCC 2 cut(s) 121, 626
Bsp1286I GDGCHC 3 cut(s) 21, 274, 354
Bsp13I TCCGGA 1 cut(s) 506
Bsp1407I TGTACA 1 cut(s) 63
Bsp143I GATC 7 cut(s) 127, 163, 509, 822, 849, 960, 992
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 3 cut(s) 548, 566, 741
BspANI GGCC 2 cut(s) 121, 626
BspDI ATCGAT 1 cut(s) 730
BspEI TCCGGA 1 cut(s) 506
BspLI GGNNCC 1 cut(s) 511
BspPI GGATC 4 cut(s) 135, 158, 504, 517
BsrDI GCAATG 2 cut(s) 318, 978
BsrGI TGTACA 1 cut(s) 63
BsrI ACTGG 1 cut(s) 567
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 7 cut(s) 127, 163, 509, 822, 849, 960, 992
BssSI CACGAG 1 cut(s) 1004
BssT1I CCWWGG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 1004
Bst4CI ACNGT 4 cut(s) 373, 607, 943, 1261
Bst6I CTCTTC 1 cut(s) 761
BstAUI TGTACA 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 106, 1287
BstDEI CTNAG 1 cut(s) 1137
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 465
BstHHI GCGC 1 cut(s) 1129
BstKTI GATC 7 cut(s) 130, 166, 512, 825, 852, 963, 995
BstMAI GTCTC 3 cut(s) 237, 553, 1127
BstMBI GATC 7 cut(s) 127, 163, 509, 822, 849, 960, 992
BstNSI RCATGY 3 cut(s) 312, 524, 1285
BstSFI CTRYAG 1 cut(s) 826
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 1262
BstX2I RGATCY 2 cut(s) 509, 992
BstXI CCANNNNNNTGG 1 cut(s) 175
BstYI RGATCY 2 cut(s) 509, 992
Bsu15I ATCGAT 1 cut(s) 730
BsuRI GGCC 2 cut(s) 121, 626
BsuTUI ATCGAT 1 cut(s) 730
BtgI CCRYGG 1 cut(s) 39
BtgZI GCGATG 1 cut(s) 584
BtsCI GGATG 1 cut(s) 465
BtsIMutI CAGTG 3 cut(s) 159, 369, 1266
Cac8I GCNNGC 2 cut(s) 106, 1287
CfoI GCGC 1 cut(s) 1129
Cfr13I GGNCC 3 cut(s) 600, 743, 1050
ClaI ATCGAT 1 cut(s) 730
Csp6I GTAC 1 cut(s) 64
CviAII CATG 7 cut(s) 40, 175, 309, 521, 616, 738, 1282
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 1137
DpnI GATC 7 cut(s) 129, 165, 511, 824, 851, 962, 994
DpnII GATC 7 cut(s) 127, 163, 509, 822, 849, 960, 992
DraIII CACNNNGTG 1 cut(s) 195
EaeI YGGCCR 2 cut(s) 119, 624
Eam1104I CTCTTC 1 cut(s) 761
EarI CTCTTC 1 cut(s) 761
Ecl136II GAGCTC 2 cut(s) 19, 272
Eco130I CCWWGG 1 cut(s) 39
Eco24I GRGCYC 3 cut(s) 21, 274, 354
Eco47I GGWCC 3 cut(s) 600, 743, 1050
Eco53kI GAGCTC 2 cut(s) 19, 272
Eco57I CTGAAG 1 cut(s) 742
EcoICRI GAGCTC 2 cut(s) 19, 272
EcoT14I CCWWGG 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 1047
EcoT38I GRGCYC 3 cut(s) 21, 274, 354
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 7 cut(s) 43, 178, 312, 524, 619, 741, 1285
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FaqI GGGAC 3 cut(s) 359, 457, 556
FatI CATG 7 cut(s) 39, 174, 308, 520, 615, 737, 1281
FauI CCCGC 1 cut(s) 541
FauNDI CATATG 1 cut(s) 116
FbaI TGATCA 1 cut(s) 960
FblI GTMKAC 1 cut(s) 640
Fnu4HI GCNGC 2 cut(s) 102, 567
FokI GGATG 1 cut(s) 472
FriOI GRGCYC 3 cut(s) 21, 274, 354
Fsp4HI GCNGC 2 cut(s) 102, 567
FspBI CTAG 2 cut(s) 456, 516
GlaI GCGC 1 cut(s) 1128
GluI GCNGC 2 cut(s) 102, 567
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 2 cut(s) 121, 626
HapII CCGG 3 cut(s) 507, 598, 1308
HhaI GCGC 1 cut(s) 1129
Hin1II CATG 7 cut(s) 43, 178, 312, 524, 619, 741, 1285
Hin6I GCGC 1 cut(s) 1127
HinP1I GCGC 1 cut(s) 1127
HincII GTYRAC 4 cut(s) 667, 922, 939, 1093
HindII GTYRAC 4 cut(s) 667, 922, 939, 1093
HinfI GANTC 4 cut(s) 111, 155, 503, 717
HpaI GTTAAC 1 cut(s) 1093
HpaII CCGG 3 cut(s) 507, 598, 1308
HphI GGTGA 3 cut(s) 691, 1099, 1133
Hpy166II GTNNAC 7 cut(s) 433, 641, 667, 922, 939, 1073, 1093
Hpy188I TCNGA 5 cut(s) 23, 716, 761, 930, 1050
Hpy188III TCNNGA 6 cut(s) 395, 507, 914, 1006, 1027, 1178
Hpy8I GTNNAC 7 cut(s) 433, 641, 667, 922, 939, 1073, 1093
HpyAV CCTTC 2 cut(s) 535, 1073
HpyCH4III ACNGT 4 cut(s) 373, 607, 943, 1261
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 8 cut(s) 4, 108, 312, 323, 463, 1045, 1232, 1285
HpyF3I CTNAG 1 cut(s) 1137
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 7 cut(s) 43, 178, 312, 524, 619, 741, 1285
HspAI GCGC 1 cut(s) 1127
Kpn2I TCCGGA 1 cut(s) 506
Ksp22I TGATCA 1 cut(s) 960
KspAI GTTAAC 1 cut(s) 1093
Kzo9I GATC 7 cut(s) 127, 163, 509, 822, 849, 960, 992
LmnI GCTCC 2 cut(s) 16, 269
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 5 cut(s) 322, 450, 1054, 1114, 1241
MaeI CTAG 2 cut(s) 456, 516
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 4 cut(s) 296, 796, 1105, 1140
MalI GATC 7 cut(s) 129, 165, 511, 824, 851, 962, 994
MboI GATC 7 cut(s) 127, 163, 509, 822, 849, 960, 992
MflI RGATCY 2 cut(s) 509, 992
MhlI GDGCHC 3 cut(s) 21, 274, 354
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 8 cut(s) 425, 478, 653, 701, 777, 812, 1115, 1311
MluNI TGGCCA 1 cut(s) 121
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 2 cut(s) 569, 953
MnlI CCTC 9 cut(s) 70, 231, 282, 371, 485, 604, 1013, 1076, 1173
Mox20I TGGCCA 1 cut(s) 121
Mph1103I ATGCAT 1 cut(s) 1047
MroI TCCGGA 1 cut(s) 506
MroXI GAANNNNTTC 1 cut(s) 780
MscI TGGCCA 1 cut(s) 121
MseI TTAA 5 cut(s) 84, 276, 537, 705, 1092
MslI CAYNNNNRTG 2 cut(s) 173, 179
Msp20I TGGCCA 1 cut(s) 121
MspI CCGG 3 cut(s) 507, 598, 1308
Mva1269I GAATGC 1 cut(s) 710
NcoI CCATGG 1 cut(s) 39
NdeI CATATG 1 cut(s) 116
NdeII GATC 7 cut(s) 127, 163, 509, 822, 849, 960, 992
NlaIII CATG 7 cut(s) 43, 178, 312, 524, 619, 741, 1285
NlaIV GGNNCC 1 cut(s) 511
NmuCI GTSAC 2 cut(s) 796, 1105
NsiI ATGCAT 1 cut(s) 1047
NspI RCATGY 3 cut(s) 312, 524, 1285
PcsI WCGNNNNNNNCGW 2 cut(s) 1101, 1176
PctI GAATGC 1 cut(s) 710
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 3 cut(s) 155, 503, 717
PflFI GACNNNGTC 1 cut(s) 934
PkrI GCNGC 2 cut(s) 103, 568
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
Psp124BI GAGCTC 2 cut(s) 21, 274
PspN4I GGNNCC 1 cut(s) 511
PspPI GGNCC 3 cut(s) 600, 743, 1050
PsuI RGATCY 2 cut(s) 509, 992
PsyI GACNNNGTC 1 cut(s) 934
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 2 cut(s) 173, 179
SacI GAGCTC 2 cut(s) 21, 274
SaqAI TTAA 5 cut(s) 84, 276, 537, 705, 1092
SatI GCNGC 2 cut(s) 102, 567
Sau3AI GATC 7 cut(s) 127, 163, 509, 822, 849, 960, 992
Sau96I GGNCC 3 cut(s) 600, 743, 1050
SchI GAGTC 1 cut(s) 105
SduI GDGCHC 3 cut(s) 21, 274, 354
SfaNI GCATC 5 cut(s) 322, 450, 1054, 1114, 1241
SfcI CTRYAG 1 cut(s) 826
SinI GGWCC 3 cut(s) 600, 743, 1050
SmiMI CAYNNNNRTG 2 cut(s) 173, 179
SmlI CTYRAG 1 cut(s) 1130
SmoI CTYRAG 1 cut(s) 1130
Sse9I AATT 8 cut(s) 425, 478, 653, 701, 777, 812, 1115, 1311
SsiI CCGC 3 cut(s) 548, 566, 741
SspMI CTAG 2 cut(s) 456, 516
SstI GAGCTC 2 cut(s) 21, 274
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 4 cut(s) 373, 607, 943, 1261
TaiI ACGT 1 cut(s) 303
TaqI TCGA 7 cut(s) 130, 330, 363, 418, 730, 1026, 1179
TasI AATT 8 cut(s) 425, 478, 653, 701, 777, 812, 1115, 1311
TatI WGTACW 1 cut(s) 63
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 3 cut(s) 155, 503, 717
Tru1I TTAA 5 cut(s) 84, 276, 537, 705, 1092
Tru9I TTAA 5 cut(s) 84, 276, 537, 705, 1092
TscAI CASTG 3 cut(s) 166, 376, 1266
TseFI GTSAC 2 cut(s) 796, 1105
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 2 cut(s) 796, 1105
TspDTI ATGAA 2 cut(s) 877, 1054
TspRI CASTG 3 cut(s) 166, 376, 1266
Tth111I GACNNNGTC 1 cut(s) 934
VpaK11BI GGWCC 3 cut(s) 600, 743, 1050
XapI RAATTY 2 cut(s) 425, 653
XceI RCATGY 3 cut(s) 312, 524, 1285
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 640
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 2 cut(s) 456, 516
Zsp2I ATGCAT 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.