FvH4_7g06310

Glucomannan 4-beta-mannosyltransferase 9-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
6388432 .. 6393147
4716 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06310.t1

Sequence Viewer

Length: 1557 bp
ATGGAGGCGTTCCAAGGAGCTGGCCAAATCGGGCTGGTATTGCAGCAGGCGAAAGCGCCGCTGATCGTGCCGCTGTTGCGATTTTTGGTGGCGGTGTGCTTGGGGATGTCTGTGTTGCTCTTCGTGGAGAAGGTGTACATGGGCATTGTCATAATGTTGGTCAAGGTTTTCAGAAGAAGACCTGAGAAGCGTTGGAAATGGGAGGCAATTAAGGATGATGTGGAGCTTGGCAACTCTGCTTACCCCATGGTTCTTGTGCAAATTCCAATGTACAATGAAAAAGAGGTTTATCAGCTTTCTATTGGAGCTGCATGTGGGCTTTCATGGCCTTCTGATAGGATCATAGTTCAAGTTCTTGATGATTCAACTGACCCACTCATTAAGGATTTGGTGGAAGTAGAAGTGCAGAGATGGGCAAGCAAAGGAATAAACATAAAGTACGAGATCAGAGACAACAGACATGGGTACAAAGCAGGGGCTCTCAAAGAGGGAATGAAGCACTCTTACGTCAAACAGTGTGACTACGTCGCCATCTTTGATGCCGACTTCCAACCTGAGCCCGATTTTCTCTGGCGTACAATCCCGTTTCTCCTTCACAACCCTGACATTGCTCTTGTCCAAACTCGTTGGAAATTTGTAAATGCTGATGAGTGCTTAATGACCAGAATGCAAGAGATGTCTCTAGATTACCATTTCACAGTGGAGCAAGAAGTTGGGTCTGCAACTCATGCCTTCTTTGGTTTTAACGGCACAGCTGGAGTGTGGAGAATCACAGCCCTAAATGAGGCTGGAGGCTGGAAGGACCGCACAACTGTGGAGGATATGGATTTAGCTGTCCGAGCTAGTCTTAGAGGCTGGAAGTTCGTCTATATTTCTGACATCAAGGTGAAAAATGAATTGCCCAGTACTTTCAAAGCCTATCGTTATCAGCAGCACCGATGGTCTTGTGGCCCAGCTAATCTCTTCCGGAAGATGATAATGGAGATTTTAAGAAACAAGAAGGTGTCCCCATTGAAGAAGTTTCATGTGATCTACAGCTTTTTCTTTGTTCGCAAAATTGTAGCACATATTGTCACTTTTGTCTTCTACTGTGTTATTTTGCCAGCAACGGTTTTGGTTCCTGAAGTTCAAGTTCCCATATGGGGTGCTGTTTATATTCCTTCTACTATTACTCTCCTCAATGCAGTTGGAACTCCTAGATCACTCCACCTATTGATTTTCTGGATTCTTTTTGAGAATGTAATGTCCCTGCATCGGACTAAAGCAACATTTATAGGCCTGTTTGAAGCAGGGAGAGTAGATGAATGGGTCGTCACGGAGAAATTGGGAGATGCTCTCAAGACAAAATCAGCTGTAAAAGCTCACAGGAAGCCTCGAGTGAGGATCGGAGAAAGACTCCATTTGCTTGAGCTCATTGTTGGACTCTACCTCTTCTTCTGTGGGTGCTATGATCTTGCTTATGGAAAGAACCGCTTCTTCATCTACCTTTTCCTCCAATCCATTGCATTCTTCATTGCCGGGGTTGGTTATGTTGGCACTTTCGTTCCTAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

519

Amino Acids

59.4

Weight (kDa)

9.19

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_3 PF13641 82 - 317 3.9e-17 Glycosyltransferase like family 2
Glycos_transf_2 PF00535 87 - 244 6.2e-12 Glycosyl transferase family 2
Glyco_trans_2_3 PF13632 175 - 368 4.8e-21 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 966
AciI CCGC 5 cut(s) 59, 71, 92, 805, 1471
AclWI GGATC 2 cut(s) 347, 1391
AcoI YGGCCR 1 cut(s) 22
AcsI RAATTY 2 cut(s) 261, 632
AcuI CTGAAG 1 cut(s) 1143
AfaI GTAC 6 cut(s) 137, 272, 440, 467, 577, 907
AfiI CCNNNNNNNGG 3 cut(s) 784, 1142, 1254
AgsI TTSAA 6 cut(s) 350, 366, 913, 1015, 1130, 1286
AleI CACNNNNGTG 1 cut(s) 812
Alw21I GWGCWC 1 cut(s) 1413
Alw26I GTCTC 2 cut(s) 444, 684
AlwI GGATC 2 cut(s) 347, 1391
Ama87I CYCGRG 1 cut(s) 1374
Aor13HI TCCGGA 1 cut(s) 966
AoxI GGCC 4 cut(s) 22, 326, 949, 1276
ApeKI GCWGC 3 cut(s) 43, 308, 931
ApoI RAATTY 2 cut(s) 261, 632
Asp700I GAANNNNTTC 1 cut(s) 1472
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 802, 950
AsuC2I CCSGG 1 cut(s) 1519
AsuHPI GGTGA 1 cut(s) 898
AvaI CYCGRG 1 cut(s) 1374
AvaII GGWCC 1 cut(s) 802
BalI TGGCCA 1 cut(s) 24
BanII GRGCYC 3 cut(s) 481, 561, 1413
BarI GAAGNNNNNNTAC 2 cut(s) 488, 520
BbsI GAAGAC 2 cut(s) 184, 1075
Bbv12I GWGCWC 1 cut(s) 1413
BbvI GCAGC 3 cut(s) 55, 295, 943
BccI CCATC 3 cut(s) 405, 539, 933
BceAI ACGGC 1 cut(s) 763
BcnI CCSGG 1 cut(s) 1519
BcoDI GTCTC 2 cut(s) 444, 684
BfaI CTAG 4 cut(s) 683, 843, 1197, 1548
BfmI CTRYAG 1 cut(s) 1033
BfoI RGCGCY 1 cut(s) 59
BisI GCNGC 5 cut(s) 44, 59, 71, 309, 932
BlsI GCNGC 5 cut(s) 45, 60, 72, 310, 933
BmcAI AGTACT 1 cut(s) 907
Bme1390I CCNGG 1 cut(s) 1519
Bme18I GGWCC 1 cut(s) 802
BmeT110I CYCGRG 1 cut(s) 1374
BmgT120I GGNCC 2 cut(s) 802, 950
BmiI GGNNCC 1 cut(s) 1119
BmrFI CCNGG 1 cut(s) 1519
BmrI ACTGGG 1 cut(s) 897
BmsI GCATC 3 cut(s) 529, 1261, 1321
BmuI ACTGGG 1 cut(s) 897
BpiI GAAGAC 2 cut(s) 184, 1075
BplI GAGNNNNNCTC 4 cut(s) 1320, 1352, 1380, 1412
BpmI CTGGAG 2 cut(s) 777, 810
Bpu10I CCTNAGC 1 cut(s) 555
BpuEI CTTGAG 2 cut(s) 1322, 1427
BpuMI CCSGG 1 cut(s) 1519
BsaJI CCNNGG 3 cut(s) 13, 246, 1518
BsaWI WCCGGW 1 cut(s) 966
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 3 cut(s) 784, 1142, 1254
Bse1I ACTGG 1 cut(s) 903
Bse3DI GCAATG 3 cut(s) 606, 1500, 1512
BseAI TCCGGA 1 cut(s) 966
BseDI CCNNGG 3 cut(s) 13, 246, 1518
BseGI GGATG 2 cut(s) 111, 220
BseLI CCNNNNNNNGG 3 cut(s) 784, 1142, 1254
BseMI GCAATG 3 cut(s) 606, 1500, 1512
BseMII CTCAG 2 cut(s) 174, 546
BseNI ACTGG 1 cut(s) 903
BseRI GAGGAG 1 cut(s) 1166
BseXI GCAGC 3 cut(s) 55, 295, 943
BseYI CCCAGC 1 cut(s) 952
BsgI GTGCAG 1 cut(s) 425
BshFI GGCC 4 cut(s) 24, 328, 951, 1278
BsiHKAI GWGCWC 1 cut(s) 1413
BsiHKCI CYCGRG 1 cut(s) 1374
BsiSI CCGG 2 cut(s) 967, 1518
BslFI GGGAC 2 cut(s) 991, 1231
BslI CCNNNNNNNGG 3 cut(s) 784, 1142, 1254
BsmAI GTCTC 2 cut(s) 444, 684
BsmFI GGGAC 2 cut(s) 991, 1231
BsmI GAATGC 2 cut(s) 672, 1505
BsnI GGCC 4 cut(s) 24, 328, 951, 1278
BsoBI CYCGRG 1 cut(s) 1374
Bsp1286I GDGCHC 3 cut(s) 481, 561, 1413
Bsp13I TCCGGA 1 cut(s) 966
Bsp1407I TGTACA 2 cut(s) 135, 270
Bsp143I GATC 7 cut(s) 63, 339, 444, 1029, 1199, 1383, 1450
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 5 cut(s) 59, 71, 92, 805, 1471
BspANI GGCC 4 cut(s) 24, 328, 951, 1278
BspCNI CTCAG 2 cut(s) 175, 547
BspEI TCCGGA 1 cut(s) 966
BspLI GGNNCC 1 cut(s) 1119
BspPI GGATC 2 cut(s) 347, 1391
BspQI GCTCTTC 1 cut(s) 125
BsrDI GCAATG 3 cut(s) 606, 1500, 1512
BsrGI TGTACA 2 cut(s) 135, 270
BsrI ACTGG 1 cut(s) 903
BssECI CCNNGG 3 cut(s) 13, 246, 1518
BssMI GATC 7 cut(s) 63, 339, 444, 1029, 1199, 1383, 1450
BssT1I CCWWGG 2 cut(s) 13, 246
Bst4CI ACNGT 5 cut(s) 516, 700, 814, 1091, 1111
Bst6I CTCTTC 3 cut(s) 125, 968, 1436
BstAPI GCANNNNNTGC 1 cut(s) 728
BstAUI TGTACA 2 cut(s) 135, 270
BstC8I GCNNGC 4 cut(s) 22, 48, 418, 1104
BstDEI CTNAG 3 cut(s) 183, 555, 848
BstDSI CCRYGG 1 cut(s) 246
BstENI CCTNNNNNAGG 1 cut(s) 782
BstF5I GGATG 2 cut(s) 111, 220
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 7 cut(s) 66, 342, 447, 1032, 1202, 1386, 1453
BstMAI GTCTC 2 cut(s) 444, 684
BstMBI GATC 7 cut(s) 63, 339, 444, 1029, 1199, 1383, 1450
BstMWI GCNNNNNNNGC 7 cut(s) 40, 67, 76, 325, 728, 839, 1358
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 1517
BstSFI CTRYAG 1 cut(s) 1033
BstV1I GCAGC 3 cut(s) 55, 295, 943
BstV2I GAAGAC 2 cut(s) 184, 1075
BstXI CCANNNNNNTGG 1 cut(s) 20
BsuRI GGCC 4 cut(s) 24, 328, 951, 1278
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 111, 220
BtsIMutI CAGTG 2 cut(s) 521, 705
Cac8I GCNNGC 4 cut(s) 22, 48, 418, 1104
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 802, 950
Csp6I GTAC 6 cut(s) 136, 271, 439, 466, 576, 906
CviAII CATG 7 cut(s) 139, 247, 312, 324, 461, 728, 1025
CviQI GTAC 6 cut(s) 136, 271, 439, 466, 576, 906
DdeI CTNAG 3 cut(s) 183, 555, 848
DpnI GATC 7 cut(s) 65, 341, 446, 1031, 1201, 1385, 1452
DpnII GATC 7 cut(s) 63, 339, 444, 1029, 1199, 1383, 1450
EaeI YGGCCR 1 cut(s) 22
Eam1104I CTCTTC 3 cut(s) 125, 968, 1436
EarI CTCTTC 3 cut(s) 125, 968, 1436
Ecl136II GAGCTC 1 cut(s) 1411
Eco130I CCWWGG 2 cut(s) 13, 246
Eco147I AGGCCT 1 cut(s) 1278
Eco24I GRGCYC 3 cut(s) 481, 561, 1413
Eco47I GGWCC 1 cut(s) 802
Eco53kI GAGCTC 1 cut(s) 1411
Eco57I CTGAAG 1 cut(s) 1143
Eco88I CYCGRG 1 cut(s) 1374
EcoICRI GAGCTC 1 cut(s) 1411
EcoNI CCTNNNNNAGG 1 cut(s) 782
EcoT14I CCWWGG 2 cut(s) 13, 246
EcoT38I GRGCYC 3 cut(s) 481, 561, 1413
ErhI CCWWGG 2 cut(s) 13, 246
FaeI CATG 7 cut(s) 142, 250, 315, 327, 464, 731, 1028
FalI AAGNNNNNCTT 2 cut(s) 1457, 1489
FaqI GGGAC 2 cut(s) 991, 1231
FatI CATG 7 cut(s) 138, 246, 311, 323, 460, 727, 1024
FauNDI CATATG 1 cut(s) 1139
Fnu4HI GCNGC 5 cut(s) 44, 59, 71, 309, 932
FokI GGATG 2 cut(s) 118, 227
FriOI GRGCYC 3 cut(s) 481, 561, 1413
Fsp4HI GCNGC 5 cut(s) 44, 59, 71, 309, 932
FspBI CTAG 4 cut(s) 683, 843, 1197, 1548
GlaI GCGC 1 cut(s) 57
GluI GCNGC 5 cut(s) 44, 59, 71, 309, 932
GsaI CCCAGC 1 cut(s) 956
GsuI CTGGAG 2 cut(s) 777, 810
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 4 cut(s) 24, 328, 951, 1278
HapII CCGG 2 cut(s) 967, 1518
HhaI GCGC 1 cut(s) 58
Hin1II CATG 7 cut(s) 142, 250, 315, 327, 464, 731, 1028
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 5 cut(s) 362, 768, 1225, 1395, 1422
HpaII CCGG 2 cut(s) 967, 1518
HphI GGTGA 1 cut(s) 898
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 7 cut(s) 173, 334, 449, 839, 877, 1257, 1388
Hpy188III TCNNGA 6 cut(s) 356, 683, 967, 1121, 1222, 1339
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 530
HpyAV CCTTC 7 cut(s) 124, 339, 602, 742, 793, 994, 1170
HpyCH4III ACNGT 5 cut(s) 516, 700, 814, 1091, 1111
HpyCH4IV ACGT 2 cut(s) 507, 525
HpyCH4V TGCA 9 cut(s) 43, 259, 311, 406, 670, 722, 1184, 1252, 1505
HpyF10VI GCNNNNNNNGC 7 cut(s) 40, 67, 76, 325, 728, 839, 1358
HpyF3I CTNAG 3 cut(s) 183, 555, 848
HpySE526I ACGT 2 cut(s) 507, 525
Hsp92II CATG 7 cut(s) 142, 250, 315, 327, 464, 731, 1028
HspAI GCGC 1 cut(s) 56
Kpn2I TCCGGA 1 cut(s) 966
Kzo9I GATC 7 cut(s) 63, 339, 444, 1029, 1199, 1383, 1450
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 4 cut(s) 17, 223, 305, 703
Lsp1109I GCAGC 3 cut(s) 55, 295, 943
LweI GCATC 3 cut(s) 529, 1261, 1321
MaeI CTAG 4 cut(s) 683, 843, 1197, 1548
MaeII ACGT 2 cut(s) 507, 525
MaeIII GTNAC 3 cut(s) 518, 1072, 1312
MalI GATC 7 cut(s) 65, 341, 446, 1031, 1201, 1385, 1452
MboI GATC 7 cut(s) 63, 339, 444, 1029, 1199, 1383, 1450
MhlI GDGCHC 3 cut(s) 481, 561, 1413
MlsI TGGCCA 1 cut(s) 24
MluCI AATT 6 cut(s) 207, 261, 632, 896, 1056, 1322
MluNI TGGCCA 1 cut(s) 24
MlyI GAGTC 2 cut(s) 1389, 1416
MmeI TCCRAC 5 cut(s) 173, 574, 608, 1168, 1399
Mox20I TGGCCA 1 cut(s) 24
MroI TCCGGA 1 cut(s) 966
MroXI GAANNNNTTC 1 cut(s) 1472
MscI TGGCCA 1 cut(s) 24
MseI TTAA 6 cut(s) 210, 381, 656, 744, 989, 1555
MslI CAYNNNNRTG 2 cut(s) 812, 884
Msp20I TGGCCA 1 cut(s) 24
MspA1I CMGCKG 4 cut(s) 61, 73, 755, 1352
MspI CCGG 2 cut(s) 967, 1518
MspR9I CCNGG 1 cut(s) 1519
Mva1269I GAATGC 2 cut(s) 672, 1505
MwoI GCNNNNNNNGC 7 cut(s) 40, 67, 76, 325, 728, 839, 1358
NciI CCSGG 1 cut(s) 1519
NcoI CCATGG 1 cut(s) 246
NdeI CATATG 1 cut(s) 1139
NdeII GATC 7 cut(s) 63, 339, 444, 1029, 1199, 1383, 1450
NlaIII CATG 7 cut(s) 142, 250, 315, 327, 464, 731, 1028
NlaIV GGNNCC 1 cut(s) 1119
NmuCI GTSAC 3 cut(s) 518, 1072, 1312
NspI RCATGY 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 812
PaeR7I CTCGAG 1 cut(s) 1374
PceI AGGCCT 1 cut(s) 1278
PciSI GCTCTTC 1 cut(s) 125
PctI GAATGC 2 cut(s) 672, 1505
PdmI GAANNNNTTC 1 cut(s) 1472
PfeI GAWTC 3 cut(s) 362, 768, 1225
PflFI GACNNNGTC 1 cut(s) 524
PkrI GCNGC 5 cut(s) 45, 60, 72, 310, 933
PleI GAGTC 2 cut(s) 1389, 1416
PpsI GAGTC 2 cut(s) 1389, 1416
Psp124BI GAGCTC 1 cut(s) 1413
PspFI CCCAGC 1 cut(s) 952
PspN4I GGNNCC 1 cut(s) 1119
PspPI GGNCC 2 cut(s) 802, 950
PspXI VCTCGAGB 1 cut(s) 1374
PsyI GACNNNGTC 1 cut(s) 524
PvuII CAGCTG 2 cut(s) 755, 1352
RsaI GTAC 6 cut(s) 137, 272, 440, 467, 577, 907
RsaNI GTAC 6 cut(s) 136, 271, 439, 466, 576, 906
RseI CAYNNNNRTG 2 cut(s) 812, 884
SacI GAGCTC 1 cut(s) 1413
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 6 cut(s) 210, 381, 656, 744, 989, 1555
SatI GCNGC 5 cut(s) 44, 59, 71, 309, 932
Sau3AI GATC 7 cut(s) 63, 339, 444, 1029, 1199, 1383, 1450
Sau96I GGNCC 2 cut(s) 802, 950
ScaI AGTACT 1 cut(s) 907
SchI GAGTC 2 cut(s) 1389, 1416
ScrFI CCNGG 1 cut(s) 1519
SduI GDGCHC 3 cut(s) 481, 561, 1413
SfaNI GCATC 3 cut(s) 529, 1261, 1321
SfcI CTRYAG 1 cut(s) 1033
Sfr274I CTCGAG 1 cut(s) 1374
SinI GGWCC 1 cut(s) 802
SlaI CTCGAG 1 cut(s) 1374
SmiMI CAYNNNNRTG 2 cut(s) 812, 884
SmlI CTYRAG 3 cut(s) 1337, 1374, 1406
SmoI CTYRAG 3 cut(s) 1337, 1374, 1406
Sse9I AATT 6 cut(s) 207, 261, 632, 896, 1056, 1322
SseBI AGGCCT 1 cut(s) 1278
SsiI CCGC 5 cut(s) 59, 71, 92, 805, 1471
SspMI CTAG 4 cut(s) 683, 843, 1197, 1548
SstI GAGCTC 1 cut(s) 1413
StuI AGGCCT 1 cut(s) 1278
StyD4I CCNGG 1 cut(s) 1517
StyI CCWWGG 2 cut(s) 13, 246
TaaI ACNGT 5 cut(s) 516, 700, 814, 1091, 1111
TaiI ACGT 2 cut(s) 510, 528
TaqI TCGA 1 cut(s) 1375
TasI AATT 6 cut(s) 207, 261, 632, 896, 1056, 1322
TatI WGTACW 3 cut(s) 135, 270, 905
TauI GCSGC 2 cut(s) 61, 73
TfiI GAWTC 3 cut(s) 362, 768, 1225
Tru1I TTAA 6 cut(s) 210, 381, 656, 744, 989, 1555
Tru9I TTAA 6 cut(s) 210, 381, 656, 744, 989, 1555
TscAI CASTG 2 cut(s) 521, 705
TseFI GTSAC 3 cut(s) 518, 1072, 1312
TseI GCWGC 3 cut(s) 43, 308, 931
Tsp45I GTSAC 3 cut(s) 518, 1072, 1312
TspDTI ATGAA 8 cut(s) 291, 312, 509, 909, 1013, 1317, 1468, 1501
TspGWI ACGGA 1 cut(s) 1331
TspRI CASTG 2 cut(s) 521, 705
Tth111I GACNNNGTC 1 cut(s) 524
VpaK11BI GGWCC 1 cut(s) 802
XagI CCTNNNNNAGG 1 cut(s) 782
XapI RAATTY 2 cut(s) 261, 632
XbaI TCTAGA 1 cut(s) 682
XceI RCATGY 1 cut(s) 315
XhoI CTCGAG 1 cut(s) 1374
XmnI GAANNNNTTC 1 cut(s) 1472
XspI CTAG 4 cut(s) 683, 843, 1197, 1548
ZrmI AGTACT 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.