Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005977

Physical Location & Seq

Genomic Coordinates Reverse (-)

4774726 .. 4776324

Gene Structure 1599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGACAAGAATGCAAGAGATGTCACTGGATTACCATTTCACAGTGGAGCAAGAAGTGGGGTCTGCAACTCATGCCTTCTTCGGTTTCAATGGCACGGCTGGTGTCTGGAGAATTGCAGCACTCAATGAGGCCGGAGGATGGAAGGACCGAACAACTGTGGAGGATATGGATTTAGCTGTCCGGGCTAGTCTCGGAGGCTGGAAATTCGTATATCTTTCTGACGTTAAGGTGAAAAATGAATTGCCAAGTACTTTCAAAGCTTACCGTTATCAACAGCACCGATGGTCTTGTGGCCCTGCTAATCTCTTCCGAAAGATGGTAATGGAGATTGTAAGAAACAAGGTAAATTTCCACACCGTTTCTGTTGTGTTTATGAAAGCGGTTTATGAAGGCACAAGTACTAGATCCTTTGATTTCTTCCTACTCACTGTTACTCTAAATATATTGCAGAAGGTGTCCCCAATGAAAAAGTTTCATGTGATCTACAGCTTTTTCTTTGTTCGCAAAATTGTAGCGCATATTGTTACATTTGTGTTCTACTGTATCATTTTACCAGCTACTGTTTTGGTTCCTGAAGTTCAAGTTCCCATTTGGGGTGCTGTTTACATTCCATCCATCATTACTCTCCTCAACGCCGTTGGAACTCCAAGATCACTCCACCTTATGATTTTCTGGATCCTCTTTGAGAATGTCATGTCTCTGCACCGTACCAAGGCAACAGTTATAGGTCTATTTGAAGCAGGGAGAGTAAATGAATGGGTCGTCACGGAGAAACTGGGAGATGCTCTCAAGACAAAATCAGGAGGAAAGGCTGCGAGGAGACCTCGATCGAGGATTGGAGAAAGGTATAATGATTCTTTGCATTACGTTTCTTTTCTTTTCTTTATCATTCGTAGAACCATATGTCCACTGCATATGCTTGAGCTCATTGTTGGATTCTACCTCTTCTTCTGCGGGTGCTATGATCTTGCCTTTGGAAAGAACGGCTACTTCATCTTCCTATTCATCCAATCTATTGCATTCTTCATCGCGGGGGTTGGTTACGTTGGCACCTTTGTCCCCAACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

357

Amino Acids

40.7

Weight (kDa)

9.59

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23480 AT1G23480 AT1G23480 AT1G23480 AT2G35650 AT2G35650 AT2G35650 AT5G16190
fragaria_vesca	FvH4_7g06310
malus_domestica	MD02G1245000.v1.1 MD07G1071900.v1.1
prunus_persica	Prupe.2G089900_v2.0.a1 Prupe.2G089900_v2.0.a1 Prupe.2G090000_v2.0.a1
pyrus_communis	pycom07g05480
rosa_chinensis	RchiOBHm_Chr1g0334161
rosa_laevigata	RLG00000029475
rosa_multiflora	Rmu_sc0003690.1_g000039 Rmu_sc0008401.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316980
rosa_rugosa	Rorug01G0113000
rosa_samantha	Rh1AG137000 Rh1BG104400 Rh1CG129200
rosa_wichuraiana	Rw0G019290 Rw0G020510 Rw1G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1049
AccII	CGCG	1 cut(s)	1031
AciI	CCGC	3 cut(s)	380, 954, 1031
AclWI	GGATC	3 cut(s)	399, 670, 683
AcsI	RAATTY	2 cut(s)	203, 346
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	3 cut(s)	250, 400, 709
AfiI	CCNNNNNNNGG	4 cut(s)	138, 316, 593, 712
AgsI	TTSAA	4 cut(s)	88, 256, 581, 737
AloI	GAACNNNNNNTCC	2 cut(s)	889, 921
AluBI	AGCT	5 cut(s)	176, 260, 489, 557, 925
AluI	AGCT	5 cut(s)	176, 260, 489, 557, 925
Alw21I	GWGCWC	1 cut(s)	927
Alw26I	GTCTC	3 cut(s)	194, 702, 814
AlwI	GGATC	3 cut(s)	399, 670, 683
AlwNI	CAGNNNCTG	1 cut(s)	560
AoxI	GGCC	2 cut(s)	129, 292
ApeKI	GCWGC	2 cut(s)	116, 812
ApoI	RAATTY	2 cut(s)	203, 346
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	2 cut(s)	145, 293
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	675
BanI	GGYRCC	1 cut(s)	1049
BanII	GRGCYC	1 cut(s)	927
Bbv12I	GWGCWC	1 cut(s)	927
BbvI	GCAGC	2 cut(s)	128, 799
BccI	CCATC	5 cut(s)	132, 276, 310, 619, 623
BceAI	ACGGC	3 cut(s)	111, 620, 1000
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	3 cut(s)	194, 702, 814
BfaI	CTAG	2 cut(s)	186, 402
BfmI	CTRYAG	1 cut(s)	484
BisI	GCNGC	2 cut(s)	117, 813
BlsI	GCNGC	2 cut(s)	118, 814
BmcAI	AGTACT	2 cut(s)	250, 400
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	145, 293
BmiI	GGNNCC	3 cut(s)	570, 677, 1051
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	1 cut(s)	772
BmuI	ACTGGG	1 cut(s)	785
BplI	GAGNNNNNCTC	4 cut(s)	771, 803, 808, 840
BpmI	CTGGAG	1 cut(s)	127
BpuEI	CTTGAG	2 cut(s)	773, 941
BpuMI	CCSGG	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	814
BsaJI	CCNNGG	1 cut(s)	711
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 316, 593, 712
Bse1I	ACTGG	2 cut(s)	30, 780
BseDI	CCNNGG	1 cut(s)	711
BseGI	GGATG	3 cut(s)	143, 611, 1005
BseLI	CCNNNNNNNGG	4 cut(s)	138, 316, 593, 712
BseNI	ACTGG	2 cut(s)	30, 780
BseRI	GAGGAG	2 cut(s)	617, 832
BseXI	GCAGC	2 cut(s)	128, 799
BsgI	GTGCAG	1 cut(s)	686
Bsh1236I	CGCG	1 cut(s)	1031
Bsh1285I	CGRYCG	1 cut(s)	830
BshFI	GGCC	2 cut(s)	131, 294
BshNI	GGYRCC	1 cut(s)	1049
BsiEI	CGRYCG	1 cut(s)	830
BsiHKAI	GWGCWC	1 cut(s)	927
BsiSI	CCGG	2 cut(s)	132, 181
BslFI	GGGAC	2 cut(s)	442, 1043
BslI	CCNNNNNNNGG	4 cut(s)	138, 316, 593, 712
BsmAI	GTCTC	3 cut(s)	194, 702, 814
BsmFI	GGGAC	2 cut(s)	442, 1043
BsmI	GAATGC	2 cut(s)	15, 1019
BsnI	GGCC	2 cut(s)	131, 294
Bso31I	GGTCTC	1 cut(s)	814
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp143I	GATC	6 cut(s)	404, 480, 650, 675, 827, 964
BspACI	CCGC	3 cut(s)	380, 954, 1031
BspANI	GGCC	2 cut(s)	131, 294
BspFNI	CGCG	1 cut(s)	1031
BspLI	GGNNCC	3 cut(s)	570, 677, 1051
BspPI	GGATC	3 cut(s)	399, 670, 683
BspT107I	GGYRCC	1 cut(s)	1049
BspTNI	GGTCTC	1 cut(s)	814
BsrI	ACTGG	2 cut(s)	30, 780
BssECI	CCNNGG	1 cut(s)	711
BssMI	GATC	6 cut(s)	404, 480, 650, 675, 827, 964
BssT1I	CCWWGG	1 cut(s)	711
Bst4CI	ACNGT	9 cut(s)	43, 157, 266, 358, 430, 542, 562, 707, 721
Bst6I	CTCTTC	2 cut(s)	311, 950
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstF5I	GGATG	3 cut(s)	143, 611, 1005
BstFNI	CGCG	1 cut(s)	1031
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	6 cut(s)	407, 483, 653, 678, 830, 967
BstMAI	GTCTC	3 cut(s)	194, 702, 814
BstMBI	GATC	6 cut(s)	404, 480, 650, 675, 827, 964
BstMCI	CGRYCG	1 cut(s)	830
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 182
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	484
BstUI	CGCG	1 cut(s)	1031
BstV1I	GCAGC	2 cut(s)	128, 799
BstX2I	RGATCY	2 cut(s)	404, 675
BstYI	RGATCY	2 cut(s)	404, 675
BsuRI	GGCC	2 cut(s)	131, 294
BtgZI	GCGATG	1 cut(s)	1012
BtsCI	GGATG	3 cut(s)	143, 611, 1005
BtsI	GCAGTG	1 cut(s)	908
BtsIMutI	CAGTG	4 cut(s)	23, 48, 426, 908
CaiI	CAGNNNCTG	1 cut(s)	560
CfoI	GCGC	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	145, 293
Csp6I	GTAC	3 cut(s)	249, 399, 708
CviAII	CATG	3 cut(s)	71, 476, 694
CviQI	GTAC	3 cut(s)	249, 399, 708
DpnI	GATC	6 cut(s)	406, 482, 652, 677, 829, 966
DpnII	GATC	6 cut(s)	404, 480, 650, 675, 827, 964
Eam1104I	CTCTTC	2 cut(s)	311, 950
EarI	CTCTTC	2 cut(s)	311, 950
Ecl136II	GAGCTC	1 cut(s)	925
Eco130I	CCWWGG	1 cut(s)	711
Eco24I	GRGCYC	1 cut(s)	927
Eco31I	GGTCTC	1 cut(s)	814
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	925
Eco57I	CTGAAG	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	925
EcoT14I	CCWWGG	1 cut(s)	711
EcoT38I	GRGCYC	1 cut(s)	927
ErhI	CCWWGG	1 cut(s)	711
FaeI	CATG	3 cut(s)	74, 479, 697
FaqI	GGGAC	2 cut(s)	442, 1043
FatI	CATG	3 cut(s)	70, 475, 693
FauI	CCCGC	2 cut(s)	947, 1024
FauNDI	CATATG	2 cut(s)	902, 915
Fnu4HI	GCNGC	2 cut(s)	117, 813
FokI	GGATG	3 cut(s)	150, 598, 992
FriOI	GRGCYC	1 cut(s)	927
Fsp4HI	GCNGC	2 cut(s)	117, 813
FspBI	CTAG	2 cut(s)	186, 402
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	2 cut(s)	117, 813
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	131, 294
HapII	CCGG	2 cut(s)	132, 181
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	3 cut(s)	74, 479, 697
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	2 cut(s)	854, 936
HpaII	CCGG	2 cut(s)	132, 181
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	604, 908
Hpy188I	TCNGA	3 cut(s)	194, 220, 311
Hpy188III	TCNNGA	5 cut(s)	106, 572, 673, 790, 801
Hpy8I	GTNNAC	2 cut(s)	604, 908
HpyAV	CCTTC	4 cut(s)	85, 136, 383, 445
HpyCH4III	ACNGT	9 cut(s)	43, 157, 266, 358, 430, 542, 562, 707, 721
HpyCH4IV	ACGT	3 cut(s)	222, 867, 1044
HpyCH4V	TGCA	8 cut(s)	13, 65, 116, 448, 703, 862, 913, 1019
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 182
HpySE526I	ACGT	3 cut(s)	222, 867, 1044
Hsp92II	CATG	3 cut(s)	74, 479, 697
HspAI	GCGC	1 cut(s)	515
Kzo9I	GATC	6 cut(s)	404, 480, 650, 675, 827, 964
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	2 cut(s)	128, 799
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	2 cut(s)	186, 402
MaeII	ACGT	3 cut(s)	222, 867, 1044
MaeIII	GTNAC	5 cut(s)	21, 430, 523, 763, 1040
MalI	GATC	6 cut(s)	406, 482, 652, 677, 829, 966
MboI	GATC	6 cut(s)	404, 480, 650, 675, 827, 964
MboII	GAAGA	7 cut(s)	70, 298, 409, 937, 940, 988, 1015
MflI	RGATCY	2 cut(s)	404, 675
MhlI	GDGCHC	1 cut(s)	927
MluCI	AATT	5 cut(s)	111, 203, 239, 346, 507
MmeI	TCCRAC	2 cut(s)	619, 913
MseI	TTAA	1 cut(s)	225
MspI	CCGG	2 cut(s)	132, 181
MspR9I	CCNGG	1 cut(s)	182
Mva1269I	GAATGC	2 cut(s)	15, 1019
MvnI	CGCG	1 cut(s)	1031
MwoI	GCNNNNNNNGC	2 cut(s)	71, 182
NciI	CCSGG	1 cut(s)	182
NdeI	CATATG	2 cut(s)	902, 915
NdeII	GATC	6 cut(s)	404, 480, 650, 675, 827, 964
NlaIII	CATG	3 cut(s)	74, 479, 697
NlaIV	GGNNCC	3 cut(s)	570, 677, 1051
NmuCI	GTSAC	2 cut(s)	21, 763
PctI	GAATGC	2 cut(s)	15, 1019
PfeI	GAWTC	2 cut(s)	854, 936
PkrI	GCNGC	2 cut(s)	118, 814
Ple19I	CGATCG	1 cut(s)	830
Psp124BI	GAGCTC	1 cut(s)	927
PspN4I	GGNNCC	3 cut(s)	570, 677, 1051
PspPI	GGNCC	2 cut(s)	145, 293
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	2 cut(s)	404, 675
PvuI	CGATCG	1 cut(s)	830
RsaI	GTAC	3 cut(s)	250, 400, 709
RsaNI	GTAC	3 cut(s)	249, 399, 708
SacI	GAGCTC	1 cut(s)	927
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	2 cut(s)	117, 813
Sau3AI	GATC	6 cut(s)	404, 480, 650, 675, 827, 964
Sau96I	GGNCC	2 cut(s)	145, 293
ScaI	AGTACT	2 cut(s)	250, 400
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	927
SfaNI	GCATC	1 cut(s)	772
SfcI	CTRYAG	1 cut(s)	484
SinI	GGWCC	1 cut(s)	145
SmlI	CTYRAG	2 cut(s)	788, 920
SmoI	CTYRAG	2 cut(s)	788, 920
Sse9I	AATT	5 cut(s)	111, 203, 239, 346, 507
SsiI	CCGC	3 cut(s)	380, 954, 1031
SspMI	CTAG	2 cut(s)	186, 402
SstI	GAGCTC	1 cut(s)	927
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	711
TaaI	ACNGT	9 cut(s)	43, 157, 266, 358, 430, 542, 562, 707, 721
TaiI	ACGT	3 cut(s)	225, 870, 1047
TaqI	TCGA	2 cut(s)	826, 830
TaqII	GACCGA	1 cut(s)	162
TasI	AATT	5 cut(s)	111, 203, 239, 346, 507
TatI	WGTACW	2 cut(s)	248, 398
TfiI	GAWTC	2 cut(s)	854, 936
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	4 cut(s)	30, 48, 433, 915
TseFI	GTSAC	2 cut(s)	21, 763
TseI	GCWGC	2 cut(s)	116, 812
Tsp45I	GTSAC	2 cut(s)	21, 763
TspDTI	ATGAA	9 cut(s)	252, 389, 402, 464, 479, 768, 982, 994, 1015
TspGWI	ACGGA	1 cut(s)	782
TspRI	CASTG	4 cut(s)	30, 48, 433, 915
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	2 cut(s)	203, 346
XspI	CTAG	2 cut(s)	186, 402
ZrmI	AGTACT	2 cut(s)	250, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.