Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005977

Physical Location & Seq

Genomic Coordinates Reverse (-)

14244717 .. 14250025

Gene Structure 5309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G089900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGTCTCTGATGCTTTTTGTGGAGAAGGTGTACATGGGCATAATGATAATATTGATTAAGCTGTTTAGAAGAAGGCCTGTGAAGCATTGGAAATGGGAGGCCATTAAGGATGATGTTGAGCTTGGGAACTCAGCTTACCCTATGGTTCTTGTGCAAATTCCTATGTACAATGAAAGAGAGGTTTATCAGCTTTCTATTGGAGCTGCATGTGGGCTTTCCTGGCCTTCTGATAGGATCATAATTCAAGTTCTTGATGATTCAACAGATCCAACCATTAAGGATTTGGTGGAGCTAGAATGCCAAAGATGGGCAAGCAAAGGAATAAACATAAAGTACGAGATCAGAGACGACAGAAATGGGTTCAAAGCAGGGTCTCTCAAAGAAGGCATGAAGCACAGTTATGTCAAACAGTGTGACTATGTTGCCATCTTTGATGCTGACTTCCAACCTGAGCCTGATTTTCTCTACCGCACCATTCCATTTCTGGTCCACAACTCTGACATTGCTCTTGTCCAAGCTCGCTGGAAATTTGTGAATTCAGATGAGTGCTTGATGACAAGAATGCAAGAGATGACACTTGATTACCATTTCACGGTGGAGCAAGAAGTGGGGTCTGCAACTTATGCCTTCTTTGGTTTCAATGGCACGGCGGGTGTGTGGAGAATTGCAGCGCTCAATGACGCTGGAGGATGGAAGGACTGCACAACAGTGGAGGATATGGATTTAGCAGTCCGAGCTAGTCTCAAAGGCTGGAAATTTGTATATCTTTCTGACCTTAAGGTGAAAAATGAATTGCCAAGTACTTTCAAAGCCTACCGTTATCAGCAGCATCGATGGTCTTGTGGCCCTGCTAATCTCTTTAGAAAGATGGTAATGGAGATTGTGAGAAACAAGAAGGTGTCCCCATTGAAGAAGTTTCATGTGATCTACAGCTTTTTCTTTGTTCGCAAAATTGTAGCACATATCGTCACATTTGTCTTCTACTGTGTCATTTTACCAGCAACGGTTTTGGTTCCTGAAGTTCAAGTTCCCATCTGGGGTGCTGTTTACATTCCTTCTACCATTACTCTCCTCAATGCTGTTGGAACTCCTAGATCACTCCACCTATTGATTTTCTGGATCCTCTTTGAGAATGTCATGTCTCTGCACCGGACTAAGGCGACATTTATAGGTCTTTTTGAAGCAGGGAGAGTAAATGAATGGGTCGTCACTGAGAAACTGGGAGATGCTCTCAAGAAAAAATTAGGTGCAAAAGCTCCCAGGAAACCTCGATTAAGAATTGGAGAAAGACTACATGTGCTTGAGCTCATTGTTGGATTCTACCTCTTCTTCTGCGGCTGCTATGACCTTGCCTTTGGAAAGAACGGATACTTTATCTACCTATTCATCCAATCTGTTGCATTCTTCATTGCGGGGGTTGGTTATGTTGGCACCTTTGTCCCCAACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

484

Amino Acids

55.55

Weight (kDa)

9.04

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23480 AT1G23480 AT1G23480 AT1G23480 AT2G35650 AT2G35650 AT2G35650 AT5G16190
fragaria_vesca	FvH4_7g06310
malus_domestica	MD02G1245000.v1.1 MD07G1071900.v1.1
prunus_persica	Prupe.2G089900_v2.0.a1 Prupe.2G089900_v2.0.a1 Prupe.2G090000_v2.0.a1
pyrus_communis	pycom07g05480
rosa_chinensis	RchiOBHm_Chr1g0334161
rosa_laevigata	RLG00000029475
rosa_multiflora	Rmu_sc0003690.1_g000039 Rmu_sc0008401.1_g000001
rosa_roxburghii	Rroxscaffold_4G00316980
rosa_rugosa	Rorug01G0113000
rosa_samantha	Rh1AG137000 Rh1BG104400 Rh1CG129200
rosa_wichuraiana	Rw0G019290 Rw0G020510 Rw1G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1430
AciI	CCGC	4 cut(s)	469, 650, 1335, 1412
AclWI	GGATC	4 cut(s)	242, 260, 1114, 1127
AcsI	RAATTY	4 cut(s)	156, 527, 535, 755
AcuI	CTGAAG	1 cut(s)	1038
AfaI	GTAC	4 cut(s)	32, 167, 335, 802
AfeI	AGCGCT	1 cut(s)	672
AfiI	CCNNNNNNNGG	4 cut(s)	307, 592, 1037, 1156
AflII	CTTAAG	1 cut(s)	776
AflIII	ACRYGT	1 cut(s)	1294
AgsI	TTSAA	8 cut(s)	245, 261, 364, 640, 808, 910, 1025, 1181
AjnI	CCWGG	2 cut(s)	218, 1259
AleI	CACNNNNGTG	1 cut(s)	707
Alw21I	GWGCWC	1 cut(s)	1308
Alw26I	GTCTC	5 cut(s)	9, 339, 378, 746, 1146
AlwI	GGATC	4 cut(s)	242, 260, 1114, 1127
Aor51HI	AGCGCT	1 cut(s)	672
AoxI	GGCC	4 cut(s)	74, 99, 221, 844
ApeKI	GCWGC	4 cut(s)	203, 668, 826, 1338
ApoI	RAATTY	4 cut(s)	156, 527, 535, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	1337, 1369
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	2 cut(s)	487, 845
AsuHPI	GGTGA	1 cut(s)	793
AvaII	GGWCC	1 cut(s)	487
BamHI	GGATCC	1 cut(s)	1119
BanI	GGYRCC	1 cut(s)	1430
BanII	GRGCYC	1 cut(s)	1308
BbsI	GAAGAC	1 cut(s)	970
Bbv12I	GWGCWC	1 cut(s)	1308
BbvI	GCAGC	4 cut(s)	190, 680, 838, 1325
BccI	CCATC	6 cut(s)	300, 434, 684, 828, 862, 1040
BceAI	ACGGC	1 cut(s)	663
BciT130I	CCWGG	2 cut(s)	220, 1261
BciVI	GTATCC	1 cut(s)	1361
BcoDI	GTCTC	5 cut(s)	9, 339, 378, 746, 1146
BfaI	CTAG	3 cut(s)	293, 738, 1092
BfmI	CTRYAG	1 cut(s)	928
BfoI	RGCGCY	1 cut(s)	674
BfrI	CTTAAG	1 cut(s)	776
BfuI	GTATCC	1 cut(s)	1361
BisI	GCNGC	5 cut(s)	204, 669, 827, 1336, 1339
BlsI	GCNGC	5 cut(s)	205, 670, 828, 1337, 1340
BmcAI	AGTACT	1 cut(s)	802
Bme1390I	CCNGG	2 cut(s)	220, 1261
Bme18I	GGWCC	1 cut(s)	487
BmgT120I	GGNCC	2 cut(s)	487, 845
BmiI	GGNNCC	3 cut(s)	1014, 1121, 1432
BmrFI	CCNGG	2 cut(s)	220, 1261
BmrI	ACTGGG	1 cut(s)	1229
BmsI	GCATC	3 cut(s)	424, 838, 1216
BmuI	ACTGGG	1 cut(s)	1229
BpiI	GAAGAC	1 cut(s)	970
BplI	GAGNNNNNCTC	4 cut(s)	726, 758, 1215, 1247
BpmI	CTGGAG	1 cut(s)	705
Bpu10I	CCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	1217, 1322
Bsa29I	ATCGAT	1 cut(s)	832
BsaI	GGTCTC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	1259
BsaWI	WCCGGW	1 cut(s)	1149
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	4 cut(s)	307, 592, 1037, 1156
Bse1I	ACTGG	1 cut(s)	1224
Bse3DI	GCAATG	2 cut(s)	501, 1407
BseBI	CCWGG	2 cut(s)	220, 1261
BseCI	ATCGAT	1 cut(s)	832
BseDI	CCNNGG	1 cut(s)	1259
BseGI	GGATG	3 cut(s)	115, 695, 1386
BseLI	CCNNNNNNNGG	4 cut(s)	307, 592, 1037, 1156
BseMI	GCAATG	2 cut(s)	501, 1407
BseMII	CTCAG	3 cut(s)	144, 441, 1203
BseNI	ACTGG	1 cut(s)	1224
BseRI	GAGGAG	1 cut(s)	1061
BseXI	GCAGC	4 cut(s)	190, 680, 838, 1325
BsgI	GTGCAG	2 cut(s)	685, 1130
BshFI	GGCC	4 cut(s)	76, 101, 223, 846
BshNI	GGYRCC	1 cut(s)	1430
BshVI	ATCGAT	1 cut(s)	832
BsiHKAI	GWGCWC	1 cut(s)	1308
BsiSI	CCGG	1 cut(s)	1150
BslFI	GGGAC	2 cut(s)	886, 1424
BslI	CCNNNNNNNGG	4 cut(s)	307, 592, 1037, 1156
BsmAI	GTCTC	5 cut(s)	9, 339, 378, 746, 1146
BsmBI	CGTCTC	1 cut(s)	339
BsmFI	GGGAC	2 cut(s)	886, 1424
BsmI	GAATGC	3 cut(s)	302, 567, 1400
BsnI	GGCC	4 cut(s)	76, 101, 223, 846
Bso31I	GGTCTC	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	1308
Bsp1407I	TGTACA	2 cut(s)	30, 165
Bsp143I	GATC	6 cut(s)	234, 265, 339, 924, 1094, 1119
BspACI	CCGC	4 cut(s)	469, 650, 1335, 1412
BspANI	GGCC	4 cut(s)	76, 101, 223, 846
BspCNI	CTCAG	3 cut(s)	143, 442, 1204
BspDI	ATCGAT	1 cut(s)	832
BspLI	GGNNCC	3 cut(s)	1014, 1121, 1432
BspPI	GGATC	4 cut(s)	242, 260, 1114, 1127
BspT107I	GGYRCC	1 cut(s)	1430
BspTI	CTTAAG	1 cut(s)	776
BspTNI	GGTCTC	1 cut(s)	378
BsrDI	GCAATG	2 cut(s)	501, 1407
BsrGI	TGTACA	2 cut(s)	30, 165
BsrI	ACTGG	1 cut(s)	1224
BssECI	CCNNGG	1 cut(s)	1259
BssMI	GATC	6 cut(s)	234, 265, 339, 924, 1094, 1119
Bst2UI	CCWGG	2 cut(s)	220, 1261
Bst4CI	ACNGT	7 cut(s)	398, 411, 595, 709, 818, 986, 1006
Bst6I	CTCTTC	1 cut(s)	1331
BstAFI	CTTAAG	1 cut(s)	776
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstAUI	TGTACA	2 cut(s)	30, 165
BstC8I	GCNNGC	2 cut(s)	313, 520
BstDEI	CTNAG	4 cut(s)	130, 450, 1155, 1212
BstF5I	GGATG	3 cut(s)	115, 695, 1386
BstH2I	RGCGCY	1 cut(s)	674
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	6 cut(s)	237, 268, 342, 927, 1097, 1122
BstMAI	GTCTC	5 cut(s)	9, 339, 378, 746, 1146
BstMBI	GATC	6 cut(s)	234, 265, 339, 924, 1094, 1119
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 220, 623, 734
BstNI	CCWGG	2 cut(s)	220, 1261
BstNSI	RCATGY	2 cut(s)	210, 1298
BstSCI	CCNGG	2 cut(s)	218, 1259
BstSFI	CTRYAG	1 cut(s)	928
BstV1I	GCAGC	4 cut(s)	190, 680, 838, 1325
BstV2I	GAAGAC	1 cut(s)	970
BstX2I	RGATCY	2 cut(s)	265, 1119
BstYI	RGATCY	2 cut(s)	265, 1119
Bsu15I	ATCGAT	1 cut(s)	832
BsuI	GTATCC	1 cut(s)	1361
BsuRI	GGCC	4 cut(s)	76, 101, 223, 846
BsuTUI	ATCGAT	1 cut(s)	832
BtsCI	GGATG	3 cut(s)	115, 695, 1386
BtsIMutI	CAGTG	3 cut(s)	416, 714, 1209
Cac8I	GCNNGC	2 cut(s)	313, 520
CfoI	GCGC	1 cut(s)	673
Cfr13I	GGNCC	2 cut(s)	487, 845
ClaI	ATCGAT	1 cut(s)	832
CseI	GACGC	1 cut(s)	689
Csp6I	GTAC	4 cut(s)	31, 166, 334, 801
CviAII	CATG	6 cut(s)	34, 207, 388, 920, 1138, 1295
CviQI	GTAC	4 cut(s)	31, 166, 334, 801
DdeI	CTNAG	4 cut(s)	130, 450, 1155, 1212
DpnI	GATC	6 cut(s)	236, 267, 341, 926, 1096, 1121
DpnII	GATC	6 cut(s)	234, 265, 339, 924, 1094, 1119
Eam1104I	CTCTTC	1 cut(s)	1331
EarI	CTCTTC	1 cut(s)	1331
Ecl136II	GAGCTC	1 cut(s)	1306
Eco147I	AGGCCT	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	1308
Eco31I	GGTCTC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	487
Eco47III	AGCGCT	1 cut(s)	672
Eco53kI	GAGCTC	1 cut(s)	1306
Eco57I	CTGAAG	1 cut(s)	1038
EcoICRI	GAGCTC	1 cut(s)	1306
EcoRI	GAATTC	1 cut(s)	535
EcoRII	CCWGG	2 cut(s)	218, 1259
EcoT38I	GRGCYC	1 cut(s)	1308
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	6 cut(s)	37, 210, 391, 923, 1141, 1298
FaqI	GGGAC	2 cut(s)	886, 1424
FatI	CATG	6 cut(s)	33, 206, 387, 919, 1137, 1294
FauI	CCCGC	2 cut(s)	643, 1405
Fnu4HI	GCNGC	5 cut(s)	204, 669, 827, 1336, 1339
FokI	GGATG	3 cut(s)	122, 702, 1373
FriOI	GRGCYC	1 cut(s)	1308
Fsp4HI	GCNGC	5 cut(s)	204, 669, 827, 1336, 1339
FspBI	CTAG	3 cut(s)	293, 738, 1092
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	5 cut(s)	204, 669, 827, 1336, 1339
GsuI	CTGGAG	1 cut(s)	705
HaeII	RGCGCY	1 cut(s)	674
HaeIII	GGCC	4 cut(s)	76, 101, 223, 846
HapII	CCGG	1 cut(s)	1150
HgaI	GACGC	1 cut(s)	689
HhaI	GCGC	1 cut(s)	673
Hin1II	CATG	6 cut(s)	37, 210, 391, 923, 1141, 1298
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HinfI	GANTC	2 cut(s)	257, 1317
HpaII	CCGG	1 cut(s)	1150
HphI	GGTGA	1 cut(s)	793
Hpy166II	GTNNAC	3 cut(s)	31, 490, 1048
Hpy188I	TCNGA	7 cut(s)	9, 229, 344, 499, 541, 734, 772
Hpy188III	TCNNGA	4 cut(s)	251, 1016, 1117, 1234
Hpy8I	GTNNAC	3 cut(s)	31, 490, 1048
HpyAV	CCTTC	8 cut(s)	19, 66, 234, 377, 637, 688, 889, 1065
HpyCH4III	ACNGT	7 cut(s)	398, 411, 595, 709, 818, 986, 1006
HpyCH4V	TGCA	9 cut(s)	154, 206, 565, 617, 668, 702, 1147, 1250, 1400
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 220, 623, 734
HpyF3I	CTNAG	4 cut(s)	130, 450, 1155, 1212
Hsp92II	CATG	6 cut(s)	37, 210, 391, 923, 1141, 1298
HspAI	GCGC	1 cut(s)	671
Kzo9I	GATC	6 cut(s)	234, 265, 339, 924, 1094, 1119
LmnI	GCTCC	4 cut(s)	200, 289, 598, 1261
Lsp1109I	GCAGC	4 cut(s)	190, 680, 838, 1325
LweI	GCATC	3 cut(s)	424, 838, 1216
MaeI	CTAG	3 cut(s)	293, 738, 1092
MaeIII	GTNAC	3 cut(s)	413, 967, 1207
MalI	GATC	6 cut(s)	236, 267, 341, 926, 1096, 1121
MboI	GATC	6 cut(s)	234, 265, 339, 924, 1094, 1119
MboII	GAAGA	6 cut(s)	81, 922, 970, 1318, 1321, 1396
MflI	RGATCY	2 cut(s)	265, 1119
MhlI	GDGCHC	1 cut(s)	1308
MmeI	TCCRAC	4 cut(s)	293, 469, 1063, 1294
MnlI	CCTC	8 cut(s)	91, 172, 680, 706, 1082, 1133, 1278, 1334
MseI	TTAA	5 cut(s)	57, 105, 276, 777, 1274
MslI	CAYNNNNRTG	2 cut(s)	399, 707
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	1 cut(s)	1150
MspR9I	CCNGG	2 cut(s)	220, 1261
Mva1269I	GAATGC	3 cut(s)	302, 567, 1400
MvaI	CCWGG	2 cut(s)	220, 1261
MwoI	GCNNNNNNNGC	4 cut(s)	82, 220, 623, 734
NdeII	GATC	6 cut(s)	234, 265, 339, 924, 1094, 1119
NlaIII	CATG	6 cut(s)	37, 210, 391, 923, 1141, 1298
NlaIV	GGNNCC	3 cut(s)	1014, 1121, 1432
NmuCI	GTSAC	3 cut(s)	413, 967, 1207
NspI	RCATGY	2 cut(s)	210, 1298
OliI	CACNNNNGTG	1 cut(s)	707
PceI	AGGCCT	1 cut(s)	76
PciI	ACATGT	1 cut(s)	1294
PctI	GAATGC	3 cut(s)	302, 567, 1400
PfeI	GAWTC	2 cut(s)	257, 1317
PkrI	GCNGC	5 cut(s)	205, 670, 828, 1337, 1340
PscI	ACATGT	1 cut(s)	1294
Psp124BI	GAGCTC	1 cut(s)	1308
Psp6I	CCWGG	2 cut(s)	218, 1259
PspGI	CCWGG	2 cut(s)	218, 1259
PspN4I	GGNNCC	3 cut(s)	1014, 1121, 1432
PspPI	GGNCC	2 cut(s)	487, 845
PsrI	GAACNNNNNNTAC	2 cut(s)	119, 151
PsuI	RGATCY	2 cut(s)	265, 1119
RsaI	GTAC	4 cut(s)	32, 167, 335, 802
RsaNI	GTAC	4 cut(s)	31, 166, 334, 801
RseI	CAYNNNNRTG	2 cut(s)	399, 707
SacI	GAGCTC	1 cut(s)	1308
SaqAI	TTAA	5 cut(s)	57, 105, 276, 777, 1274
SatI	GCNGC	5 cut(s)	204, 669, 827, 1336, 1339
Sau3AI	GATC	6 cut(s)	234, 265, 339, 924, 1094, 1119
Sau96I	GGNCC	2 cut(s)	487, 845
ScaI	AGTACT	1 cut(s)	802
ScrFI	CCNGG	2 cut(s)	220, 1261
SduI	GDGCHC	1 cut(s)	1308
SfaNI	GCATC	3 cut(s)	424, 838, 1216
SfcI	CTRYAG	1 cut(s)	928
SinI	GGWCC	1 cut(s)	487
SmiMI	CAYNNNNRTG	2 cut(s)	399, 707
SmlI	CTYRAG	3 cut(s)	776, 1232, 1301
SmoI	CTYRAG	3 cut(s)	776, 1232, 1301
SseBI	AGGCCT	1 cut(s)	76
SsiI	CCGC	4 cut(s)	469, 650, 1335, 1412
SspI	AATATT	1 cut(s)	51
SspMI	CTAG	3 cut(s)	293, 738, 1092
SstI	GAGCTC	1 cut(s)	1308
StuI	AGGCCT	1 cut(s)	76
StyD4I	CCNGG	2 cut(s)	218, 1259
TaaI	ACNGT	7 cut(s)	398, 411, 595, 709, 818, 986, 1006
TaqI	TCGA	2 cut(s)	832, 1270
TatI	WGTACW	3 cut(s)	30, 165, 800
TauI	GCSGC	1 cut(s)	1338
TfiI	GAWTC	2 cut(s)	257, 1317
Tru1I	TTAA	5 cut(s)	57, 105, 276, 777, 1274
Tru9I	TTAA	5 cut(s)	57, 105, 276, 777, 1274
TscAI	CASTG	3 cut(s)	416, 714, 1216
TseFI	GTSAC	3 cut(s)	413, 967, 1207
TseI	GCWGC	4 cut(s)	203, 668, 826, 1338
Tsp45I	GTSAC	3 cut(s)	413, 967, 1207
TspDTI	ATGAA	7 cut(s)	186, 404, 804, 908, 1212, 1375, 1396
TspGWI	ACGGA	1 cut(s)	1380
TspRI	CASTG	3 cut(s)	416, 714, 1216
Vha464I	CTTAAG	1 cut(s)	776
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	4 cut(s)	156, 527, 535, 755
XceI	RCATGY	2 cut(s)	210, 1298
XcmI	CCANNNNNNNNNTGG	2 cut(s)	280, 481
XspI	CTAG	3 cut(s)	293, 738, 1092
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.