MD07G1071900.v1.1

Glucomannan 4-beta-mannosyltransferase 9-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
6793089 .. 6797715
4627 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1071900.v1.1.491

Sequence Viewer

Length: 1554 bp
ATGGAGGCAATGCAAGGAGGGCAAATTGGGTTGGTTTTGCAGCAAGCTAAGGCGCCGCTAATCGTACCGTTGCTGAAGTTGGTGGTGGTTTTGTGCTTGGGTATGTCTGTGATGCTTTTTGTGGAGAAGGTGTACATGGGCATTGTCATAACGTTGATTAAGCTGTTTAGAAGAAAGCCTGAGAAGAAGTGGAAATGGGAGGCCGTTAAGGATGATGTTGAGCTTGGAAACTCAGCTTATCCTATGGTTCTTGTGCAAATTCCAATGTACAATGAAAAAGAGGTTTACCAGCTATCAATTGGAGCGGCATGTGGGCTTTCCTGGCCATCTGACAGGATCATCATTCAAGTTCTTGATGATTCAACAGATCCAGCCACCAAGGATTTGGTGGAACTAGAAGTGCAAAGATGGGCAAGCAAAGGAATAAACATAAATTACGAGATCAGAGGCAACAGAAATGGGTACAAGGCAGGGGCTCTGAAAGAAGGAATGAAGCACAGTTATGTCAAACAGTGTGATTATGTTGCCATCTTTGATGCTGACTTCCAACCTGAGCCTGATTTTCTCTGGCGCACCATTCCGTTTCTTATCCACAACCCTGAAGTTGCTCTTGTCCAAACTCGCTGGAAATTTGTAAATTCTGATGAGTGCTTGATGACAAGAATACAAGAGATGTCACTGGATTACCATTTCACAGTGGAGCAAGAAGTGGGGTCTGCAACTCATGCCTTCTTCGGTTTCAATGGCACGGCTGGTGTCTGGAGAATTGCAGCACTTAATGATGCCGGAGGATGGAAGGACCGAACAACTGTGGAGGATATGGATTTAGCTGTCCGCGCTAGTCTCGGAGGCTGGAAATTCGTATATCTTTCTGACGTTAAGGTGAAAAATGAATTGCCAAGTACTTTCAAAGCTTACCGTTATCAACAGCACCGATGGTCTTGTGGCCCTGCTAATCTCTTCCGAAAGATGGTAATGGAGATTGTAAGAAACAAGAAGGTGTCCCCAATGAAGAAGTTTCATGTGATCTACAGCTTTTTCTTTGTTCGCAAAATTGTAGCGCATATTGTTACATTTGTGTTCTACTGTATCATTTTACCAGCTACTGTTCTGGTTCCTGAAGTTCAAGTTCCCATTTGGGGCGCTGTTTACATTCCATCCATCATTACTCTCCTCAACGCCGTTGGAACTCCAAGATCACTCCACCTTATGATTTTCTGGATCCTCTTTGAGAATGTCATGTCTCTGCACCGTACCAAGGCAACATTTATAGGTCTATTTGAAGCAGGGAGAGTAAATGAATGGGTCGTCACGGAGAAACTGGGAGATGCTCTCAAGACAAAATCAGGAGGAAAAACTGCGAGGAGACCTCGATCAAGGATTGGAGAAAGACTGCATATGCTTGAGCTCATTGTTGGATTCTACCTCTTCTTCTGCGGGTGCTATGATCTTGCCTTTGGAAAGAACGGCTACTTCATCTTCCTATTCATCCAATCTATTGCATTCTTCATCGCGGGGGTTGGTTACGTTGGCACCTTTGTCCCCAACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

518

Amino Acids

58.86

Weight (kDa)

9.13

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_3 PF13641 81 - 316 9.4e-17 Glycosyltransferase like family 2
Glycos_transf_2 PF00535 86 - 242 6.6e-12 Glycosyl transferase family 2
Glyco_trans_2_3 PF13632 174 - 369 2.8e-20 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 52, 1532
AccBSI CCGCTC 1 cut(s) 305
AccII CGCG 2 cut(s) 837, 1514
AciI CCGC 5 cut(s) 56, 305, 835, 1437, 1514
AclI AACGTT 1 cut(s) 152
AclWI GGATC 4 cut(s) 344, 362, 1216, 1229
AcoI YGGCCR 1 cut(s) 323
AcsI RAATTY 4 cut(s) 258, 629, 637, 857
AcuI CTGAAG 3 cut(s) 95, 621, 1140
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 6 cut(s) 66, 134, 269, 464, 904, 1255
AfiI CCNNNNNNNGG 4 cut(s) 792, 970, 1139, 1258
AgsI TTSAA 6 cut(s) 347, 363, 742, 910, 1127, 1283
AjnI CCWGG 1 cut(s) 320
Alw21I GWGCWC 1 cut(s) 1410
Alw26I GTCTC 3 cut(s) 848, 1248, 1360
AlwI GGATC 4 cut(s) 344, 362, 1216, 1229
AlwNI CAGNNNCTG 1 cut(s) 1106
AoxI GGCC 3 cut(s) 201, 323, 946
ApeKI GCWGC 2 cut(s) 40, 770
ApoI RAATTY 4 cut(s) 258, 629, 637, 857
AspLEI GCGC 5 cut(s) 55, 573, 839, 1063, 1145
AspS9I GGNCC 2 cut(s) 799, 947
AsuHPI GGTGA 1 cut(s) 895
AvaII GGWCC 1 cut(s) 799
BalI TGGCCA 1 cut(s) 325
BamHI GGATCC 1 cut(s) 1221
BanI GGYRCC 2 cut(s) 52, 1532
BanII GRGCYC 2 cut(s) 478, 1410
Bbv12I GWGCWC 1 cut(s) 1410
BbvI GCAGC 2 cut(s) 52, 782
BccI CCATC 8 cut(s) 334, 402, 536, 786, 930, 964, 1165, 1169
BceAI ACGGC 4 cut(s) 188, 765, 1166, 1483
BciT130I CCWGG 1 cut(s) 322
BcoDI GTCTC 3 cut(s) 848, 1248, 1360
BfaI CTAG 2 cut(s) 395, 840
BfmI CTRYAG 1 cut(s) 1030
BfoI RGCGCY 2 cut(s) 56, 1146
BisI GCNGC 4 cut(s) 41, 56, 306, 771
BlsI GCNGC 4 cut(s) 42, 57, 307, 772
BmcAI AGTACT 1 cut(s) 904
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 799
BmgT120I GGNCC 2 cut(s) 799, 947
BmiI GGNNCC 4 cut(s) 54, 1116, 1223, 1534
BmrFI CCNGG 1 cut(s) 322
BmrI ACTGGG 1 cut(s) 1331
BmsI GCATC 4 cut(s) 102, 526, 772, 1318
BmuI ACTGGG 1 cut(s) 1331
BplI GAGNNNNNCTC 4 cut(s) 1317, 1349, 1354, 1386
BpmI CTGGAG 1 cut(s) 781
Bpu10I CCTNAGC 2 cut(s) 48, 552
BpuEI CTTGAG 2 cut(s) 1319, 1424
BsaHI GRCGYC 1 cut(s) 53
BsaI GGTCTC 1 cut(s) 1360
BsaJI CCNNGG 2 cut(s) 378, 1257
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 4 cut(s) 792, 970, 1139, 1258
Bse1I ACTGG 2 cut(s) 684, 1326
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 378, 1257
BseGI GGATG 4 cut(s) 217, 797, 1157, 1488
BseLI CCNNNNNNNGG 4 cut(s) 792, 970, 1139, 1258
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 3 cut(s) 171, 246, 543
BseNI ACTGG 2 cut(s) 684, 1326
BseRI GAGGAG 2 cut(s) 1163, 1378
BseXI GCAGC 2 cut(s) 52, 782
BsgI GTGCAG 1 cut(s) 1232
Bsh1236I CGCG 2 cut(s) 837, 1514
BshFI GGCC 3 cut(s) 203, 325, 948
BshNI GGYRCC 2 cut(s) 52, 1532
BsiHKAI GWGCWC 1 cut(s) 1410
BsiSI CCGG 1 cut(s) 786
BslFI GGGAC 2 cut(s) 988, 1526
BslI CCNNNNNNNGG 4 cut(s) 792, 970, 1139, 1258
BsmAI GTCTC 3 cut(s) 848, 1248, 1360
BsmFI GGGAC 2 cut(s) 988, 1526
BsmI GAATGC 1 cut(s) 1502
BsnI GGCC 3 cut(s) 203, 325, 948
Bso31I GGTCTC 1 cut(s) 1360
Bsp1286I GDGCHC 2 cut(s) 478, 1410
Bsp1407I TGTACA 2 cut(s) 132, 267
Bsp143I GATC 8 cut(s) 336, 367, 441, 1026, 1196, 1221, 1373, 1447
BspACI CCGC 5 cut(s) 56, 305, 835, 1437, 1514
BspANI GGCC 3 cut(s) 203, 325, 948
BspCNI CTCAG 3 cut(s) 172, 245, 544
BspFNI CGCG 2 cut(s) 837, 1514
BspLI GGNNCC 4 cut(s) 54, 1116, 1223, 1534
BspPI GGATC 4 cut(s) 344, 362, 1216, 1229
BspT107I GGYRCC 2 cut(s) 52, 1532
BspTNI GGTCTC 1 cut(s) 1360
BsrBI CCGCTC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 15
BsrGI TGTACA 2 cut(s) 132, 267
BsrI ACTGG 2 cut(s) 684, 1326
BssECI CCNNGG 2 cut(s) 378, 1257
BssMI GATC 8 cut(s) 336, 367, 441, 1026, 1196, 1221, 1373, 1447
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 2 cut(s) 378, 1257
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 9 cut(s) 69, 500, 513, 697, 811, 920, 1088, 1108, 1253
Bst6I CTCTTC 2 cut(s) 965, 1433
BstACI GRCGYC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 725
BstAUI TGTACA 2 cut(s) 132, 267
BstC8I GCNNGC 2 cut(s) 45, 415
BstDEI CTNAG 4 cut(s) 48, 180, 232, 552
BstF5I GGATG 4 cut(s) 217, 797, 1157, 1488
BstFNI CGCG 2 cut(s) 837, 1514
BstH2I RGCGCY 2 cut(s) 56, 1146
BstHHI GCGC 5 cut(s) 55, 573, 839, 1063, 1145
BstKTI GATC 8 cut(s) 339, 370, 444, 1029, 1199, 1224, 1376, 1450
BstMAI GTCTC 3 cut(s) 848, 1248, 1360
BstMBI GATC 8 cut(s) 336, 367, 441, 1026, 1196, 1221, 1373, 1447
BstMWI GCNNNNNNNGC 4 cut(s) 19, 322, 725, 836
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 1030
BstUI CGCG 2 cut(s) 837, 1514
BstV1I GCAGC 2 cut(s) 52, 782
BstX2I RGATCY 2 cut(s) 367, 1221
BstXI CCANNNNNNTGG 1 cut(s) 385
BstYI RGATCY 2 cut(s) 367, 1221
BsuRI GGCC 3 cut(s) 203, 325, 948
BtgZI GCGATG 1 cut(s) 1495
BtsCI GGATG 4 cut(s) 217, 797, 1157, 1488
BtsIMutI CAGTG 3 cut(s) 518, 677, 702
Cac8I GCNNGC 2 cut(s) 45, 415
CaiI CAGNNNCTG 1 cut(s) 1106
CfoI GCGC 5 cut(s) 55, 573, 839, 1063, 1145
Cfr13I GGNCC 2 cut(s) 799, 947
Csp6I GTAC 6 cut(s) 65, 133, 268, 463, 903, 1254
CviAII CATG 5 cut(s) 136, 309, 725, 1022, 1240
CviQI GTAC 6 cut(s) 65, 133, 268, 463, 903, 1254
DdeI CTNAG 4 cut(s) 48, 180, 232, 552
DinI GGCGCC 1 cut(s) 54
DpnI GATC 8 cut(s) 338, 369, 443, 1028, 1198, 1223, 1375, 1449
DpnII GATC 8 cut(s) 336, 367, 441, 1026, 1196, 1221, 1373, 1447
EaeI YGGCCR 1 cut(s) 323
Eam1104I CTCTTC 2 cut(s) 965, 1433
EarI CTCTTC 2 cut(s) 965, 1433
Ecl136II GAGCTC 1 cut(s) 1408
Eco130I CCWWGG 2 cut(s) 378, 1257
Eco24I GRGCYC 2 cut(s) 478, 1410
Eco31I GGTCTC 1 cut(s) 1360
Eco47I GGWCC 1 cut(s) 799
Eco53kI GAGCTC 1 cut(s) 1408
Eco57I CTGAAG 3 cut(s) 95, 621, 1140
EcoICRI GAGCTC 1 cut(s) 1408
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 378, 1257
EcoT38I GRGCYC 2 cut(s) 478, 1410
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
ErhI CCWWGG 2 cut(s) 378, 1257
FaeI CATG 5 cut(s) 139, 312, 728, 1025, 1243
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 2 cut(s) 988, 1526
FatI CATG 5 cut(s) 135, 308, 724, 1021, 1239
FauI CCCGC 2 cut(s) 1430, 1507
FauNDI CATATG 1 cut(s) 1398
Fnu4HI GCNGC 4 cut(s) 41, 56, 306, 771
FokI GGATG 4 cut(s) 224, 804, 1144, 1475
FriOI GRGCYC 2 cut(s) 478, 1410
Fsp4HI GCNGC 4 cut(s) 41, 56, 306, 771
FspBI CTAG 2 cut(s) 395, 840
GlaI GCGC 5 cut(s) 54, 572, 838, 1062, 1144
GluI GCNGC 4 cut(s) 41, 56, 306, 771
GsuI CTGGAG 1 cut(s) 781
HaeII RGCGCY 2 cut(s) 56, 1146
HaeIII GGCC 3 cut(s) 203, 325, 948
HapII CCGG 1 cut(s) 786
HhaI GCGC 5 cut(s) 55, 573, 839, 1063, 1145
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 5 cut(s) 139, 312, 728, 1025, 1243
Hin6I GCGC 5 cut(s) 53, 571, 837, 1061, 1143
HinP1I GCGC 5 cut(s) 53, 571, 837, 1061, 1143
HindIII AAGCTT 1 cut(s) 912
HinfI GANTC 2 cut(s) 359, 1419
HpaII CCGG 1 cut(s) 786
HphI GGTGA 1 cut(s) 895
Hpy166II GTNNAC 3 cut(s) 133, 286, 1150
Hpy188I TCNGA 7 cut(s) 331, 446, 480, 643, 848, 874, 965
Hpy188III TCNNGA 6 cut(s) 353, 760, 1118, 1219, 1336, 1347
Hpy8I GTNNAC 3 cut(s) 133, 286, 1150
HpyAV CCTTC 5 cut(s) 121, 479, 739, 790, 991
HpyCH4III ACNGT 9 cut(s) 69, 500, 513, 697, 811, 920, 1088, 1108, 1253
HpyCH4IV ACGT 3 cut(s) 152, 876, 1527
HpyCH4V TGCA 9 cut(s) 13, 40, 256, 403, 719, 770, 1249, 1396, 1502
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 322, 725, 836
HpyF3I CTNAG 4 cut(s) 48, 180, 232, 552
HpySE526I ACGT 3 cut(s) 152, 876, 1527
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 5 cut(s) 139, 312, 728, 1025, 1243
HspAI GCGC 5 cut(s) 53, 571, 837, 1061, 1143
KasI GGCGCC 1 cut(s) 52
Kzo9I GATC 8 cut(s) 336, 367, 441, 1026, 1196, 1221, 1373, 1447
LmnI GCTCC 2 cut(s) 302, 700
Lsp1109I GCAGC 2 cut(s) 52, 782
LweI GCATC 4 cut(s) 102, 526, 772, 1318
MaeI CTAG 2 cut(s) 395, 840
MaeII ACGT 3 cut(s) 152, 876, 1527
MaeIII GTNAC 4 cut(s) 675, 1069, 1309, 1523
MalI GATC 8 cut(s) 338, 369, 443, 1028, 1198, 1223, 1375, 1449
MbiI CCGCTC 1 cut(s) 305
MboI GATC 8 cut(s) 336, 367, 441, 1026, 1196, 1221, 1373, 1447
MboII GAAGA 9 cut(s) 183, 196, 724, 952, 1024, 1420, 1423, 1471, 1498
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 2 cut(s) 367, 1221
MhlI GDGCHC 2 cut(s) 478, 1410
MlsI TGGCCA 1 cut(s) 325
MluNI TGGCCA 1 cut(s) 325
Mly113I GGCGCC 1 cut(s) 53
MmeI TCCRAC 3 cut(s) 571, 1165, 1396
Mox20I TGGCCA 1 cut(s) 325
MscI TGGCCA 1 cut(s) 325
MseI TTAA 4 cut(s) 159, 207, 777, 879
MslI CAYNNNNRTG 1 cut(s) 501
Msp20I TGGCCA 1 cut(s) 325
MspI CCGG 1 cut(s) 786
MspR9I CCNGG 1 cut(s) 322
MunI CAATTG 1 cut(s) 297
Mva1269I GAATGC 1 cut(s) 1502
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 2 cut(s) 837, 1514
MwoI GCNNNNNNNGC 4 cut(s) 19, 322, 725, 836
NarI GGCGCC 1 cut(s) 53
NdeI CATATG 1 cut(s) 1398
NdeII GATC 8 cut(s) 336, 367, 441, 1026, 1196, 1221, 1373, 1447
NlaIII CATG 5 cut(s) 139, 312, 728, 1025, 1243
NlaIV GGNNCC 4 cut(s) 54, 1116, 1223, 1534
NmuCI GTSAC 2 cut(s) 675, 1309
NspI RCATGY 1 cut(s) 312
PctI GAATGC 1 cut(s) 1502
PfeI GAWTC 2 cut(s) 359, 1419
PkrI GCNGC 4 cut(s) 42, 57, 307, 772
PluTI GGCGCC 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 1410
Psp1406I AACGTT 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 4 cut(s) 54, 1116, 1223, 1534
PspPI GGNCC 2 cut(s) 799, 947
PstNI CAGNNNCTG 1 cut(s) 1106
PsuI RGATCY 2 cut(s) 367, 1221
RsaI GTAC 6 cut(s) 66, 134, 269, 464, 904, 1255
RsaNI GTAC 6 cut(s) 65, 133, 268, 463, 903, 1254
RseI CAYNNNNRTG 1 cut(s) 501
SacI GAGCTC 1 cut(s) 1410
SaqAI TTAA 4 cut(s) 159, 207, 777, 879
SatI GCNGC 4 cut(s) 41, 56, 306, 771
Sau3AI GATC 8 cut(s) 336, 367, 441, 1026, 1196, 1221, 1373, 1447
Sau96I GGNCC 2 cut(s) 799, 947
ScaI AGTACT 1 cut(s) 904
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 2 cut(s) 478, 1410
SfaNI GCATC 4 cut(s) 102, 526, 772, 1318
SfcI CTRYAG 1 cut(s) 1030
SfoI GGCGCC 1 cut(s) 54
SinI GGWCC 1 cut(s) 799
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 2 cut(s) 1334, 1403
SmoI CTYRAG 2 cut(s) 1334, 1403
SsiI CCGC 5 cut(s) 56, 305, 835, 1437, 1514
SspDI GGCGCC 1 cut(s) 52
SspMI CTAG 2 cut(s) 395, 840
SstI GAGCTC 1 cut(s) 1410
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 2 cut(s) 378, 1257
TaaI ACNGT 9 cut(s) 69, 500, 513, 697, 811, 920, 1088, 1108, 1253
TaiI ACGT 3 cut(s) 155, 879, 1530
TaqI TCGA 1 cut(s) 1372
TaqII GACCGA 1 cut(s) 816
TatI WGTACW 3 cut(s) 132, 267, 902
TauI GCSGC 2 cut(s) 58, 308
TfiI GAWTC 2 cut(s) 359, 1419
Tru1I TTAA 4 cut(s) 159, 207, 777, 879
Tru9I TTAA 4 cut(s) 159, 207, 777, 879
TscAI CASTG 3 cut(s) 518, 684, 702
TseFI GTSAC 2 cut(s) 675, 1309
TseI GCWGC 2 cut(s) 40, 770
Tsp45I GTSAC 2 cut(s) 675, 1309
TspDTI ATGAA 9 cut(s) 288, 506, 906, 1010, 1025, 1314, 1465, 1477, 1498
TspGWI ACGGA 2 cut(s) 570, 1328
TspRI CASTG 3 cut(s) 518, 684, 702
VpaK11BI GGWCC 1 cut(s) 799
XapI RAATTY 4 cut(s) 258, 629, 637, 857
XceI RCATGY 1 cut(s) 312
XcmI CCANNNNNNNNNTGG 3 cut(s) 296, 382, 385
XspI CTAG 2 cut(s) 395, 840
ZrmI AGTACT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.