AT2G35650

Glucomannan 4-beta-mannosyltransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
14985470 .. 14988362
2893 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35650.3

Sequence Viewer

Length: 1671 bp
ATGTCTCCTCTCCCAATCTTCCATCGTCTTCCTCACGCCACGTTCTCTTCCTTTCTCCTCTCACTGTCTCAAGCTGGAAGTTCTAAAACATCAGTGGCATTCCTCAATGCCTTCAAATCAGAAGATATCATTGCTCGAATTGGACTATGGTGGCAGCTTATAAGGGCTGTTGTAGTTGTACCTGTCTTCAAGTTCCTGGTGCTTCTATGTTTGGTCATGTCTGTCATGTTCTTCGTTGAGGTTATGTACATGGGAATCGTTGTTTTGTATGTCAAGCTGTTCAAGAGAAAGCCAGAGAAATTTTACAAATGGGAAGCCATGGAGGATGATGTTGAGTGTGGCAGTGCAAGCTACCCTATGGTTCTTGTGCAGATACCTATGTACAATGAAAAAGAGGTTTGTGAGCAATCTATTGCAGCTGCTTGCAAAATCTCATGGCCATCGAATCGTATAATAATTCAAGTGCTTGATGATTCCACGGATCCAGCCAGTAAGGAGTTGGTGAAAAAGGAGTGTGACAGATGGTCTAAAGAAGGTGTCAACATAACGTTTGAGATAAGGGACAACAGGAACGGATACAAAGCTGGTGCGTTGAGAGAAGGAATGAGGCATAGCTATGTGAAGCAGTGTGATTATGTTGCTATCTTTGATGCTGATTTCCAGCCTGATCCTGACTTCCTCCACCGCACTGTTCCATTCTTAATTCACAATCCCAAGTTAGCACTTGTACAAGGCCGGTGGGAGTTTGTGAACGCGGGTCAATGCATGATGACGAGATTACAGGAGATGTCTCTAAGTTACCACTTTACAATAGAGCAGCAAGTTGGATCTTCAACATTTGCCTTCTTTGGGTTCAACGGAACTGCTGGCGTCTGGAGAATCTCAGCATTGAATGAGTCCGGGGGATGGAATGACCAGACAACAGTAGAAGACATGGATTTAGCTGTACGAGCTACACTGAGAGGCTGGAAGTTTCTATATATCGATGATCTCAAGGTAAAAAGTGAGTTACCTTGTTCCTTCAAAGCTCTGCGTAGCCAGCAGCATCGATGGACTTGCGGCCCTGCCAATCTTTTAAGGAAAATGGCTGGACAAATAATAAGAAGCGAGAATGTATCTCTATGGAAGAAGTGGTATATGTTGTACAGCTTCTTCTTCATGCGCAAGATCGTGGCTCACATCCTCACATTCTGCTTCTACTGTGTTATCTTGCCAGCAACTGTATTGTTCCCAGAAGTCACAGTTCCGAAATGGGCTGCATTTTATCTCCCTTCTTTGATCACTCTCTTAATCGCAATTGGTAGACTAAGATCAATCCACCTTTTGGCTTTCTGGGTTCTATTTGAGAATGCAATGTCCCTGCTAAGAGCAAAGGCTCTGGTCATGGGCTTGTTCGAAACAGGAAGAGTACAAGAATGGGTTGTGACGGAGAAGTTAGGTGATACTCTCAAGACGAAGCTGATTCCACAAGTTCCTAACGTCAGATTCAGAGAGAGGGTGCATTTGCTGGAGCTATTGGTTGGAGCGTACCTGTTATTCTGCGGAATCTACGACATCGTCTATGGGAAGAACACACTCTATGTGTACCTTCTGTTTCAGTCAGTGGCCTTCTTCGTTGTTGGTTTTGGATTTGTAGGAAAATATGTTCCTGCTTCCTCTTACTTAGCATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

556

Amino Acids

63.79

Weight (kDa)

9.01

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_2 PF00535 17 - 124 2.1e-08 Glycosyl transferase family 2
Glyco_tranf_2_3 PF13641 34 - 196 7e-15 Glycosyltransferase like family 2
Glyco_trans_2_3 PF13632 54 - 264 2e-21 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 161
Acc16I TGCGCA 1 cut(s) 1163
AccB7I CCANNNNNTGG 1 cut(s) 1324
AccI GTMKAC 1 cut(s) 1303
AccII CGCG 1 cut(s) 755
AciI CCGC 4 cut(s) 685, 755, 1059, 1542
AclI AACGTT 1 cut(s) 548
AclWI GGATC 4 cut(s) 476, 489, 662, 835
AcoI YGGCCR 1 cut(s) 437
AcsI RAATTY 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 870
AfaI GTAC 9 cut(s) 180, 248, 383, 729, 948, 1145, 1410, 1529, 1586
AfiI CCNNNNNNNGG 3 cut(s) 849, 906, 1324
AgsI TTSAA 8 cut(s) 115, 190, 283, 461, 834, 856, 892, 1024
AhdI GACNNNNNGTC 1 cut(s) 523
AjnI CCWGG 1 cut(s) 195
AloI GAACNNNNNNTCC 2 cut(s) 1629, 1661
Alw26I GTCTC 3 cut(s) 9, 72, 795
AlwI GGATC 4 cut(s) 476, 489, 662, 835
AlwNI CAGNNNCTG 1 cut(s) 1220
AoxI GGCC 4 cut(s) 437, 733, 1060, 1605
ApeKI GCWGC 6 cut(s) 154, 416, 419, 817, 1042, 1256
ApoI RAATTY 1 cut(s) 299
AspLEI GCGC 1 cut(s) 1164
AspS9I GGNCC 1 cut(s) 1061
AsuC2I CCSGG 1 cut(s) 901
AsuHPI GGTGA 2 cut(s) 514, 1451
AsuII TTCGAA 1 cut(s) 1395
BaeI ACNNNNGTAYC 2 cut(s) 365, 398
BalI TGGCCA 1 cut(s) 439
BamHI GGATCC 1 cut(s) 481
BarI GAAGNNNNNNTAC 2 cut(s) 1136, 1168
BbsI GAAGAC 3 cut(s) 20, 178, 936
BbvI GCAGC 6 cut(s) 166, 406, 428, 829, 1054, 1243
BccI CCATC 5 cut(s) 30, 448, 516, 900, 1044
BcgI CGANNNNNNTGC 2 cut(s) 1038, 1072
BciT130I CCWGG 1 cut(s) 197
BciVI GTATCC 1 cut(s) 569
BclI TGATCA 1 cut(s) 1278
BcnI CCSGG 1 cut(s) 901
BcoDI GTCTC 3 cut(s) 9, 72, 795
BfuI GTATCC 1 cut(s) 569
BisI GCNGC 7 cut(s) 155, 417, 420, 818, 1043, 1060, 1257
BlsI GCNGC 7 cut(s) 156, 418, 421, 819, 1044, 1061, 1258
Bme1390I CCNGG 2 cut(s) 197, 901
BmeRI GACNNNNNGTC 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 1061
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 2 cut(s) 197, 901
BmsI GCATC 2 cut(s) 640, 1054
BpiI GAAGAC 3 cut(s) 20, 178, 936
BpmI CTGGAG 2 cut(s) 895, 1529
Bpu14I TTCGAA 1 cut(s) 1395
BpuEI CTTGAG 3 cut(s) 54, 977, 1433
BpuMI CCSGG 1 cut(s) 901
Bsa29I ATCGAT 2 cut(s) 984, 1048
BsaHI GRCGYC 1 cut(s) 870
BsaJI CCNNGG 3 cut(s) 318, 477, 900
Bsc4I CCNNNNNNNGG 3 cut(s) 849, 906, 1324
Bse118I RCCGGY 1 cut(s) 735
Bse1I ACTGG 1 cut(s) 489
Bse3DI GCAATG 2 cut(s) 129, 1359
BseBI CCWGG 1 cut(s) 197
BseCI ATCGAT 2 cut(s) 984, 1048
BseDI CCNNGG 3 cut(s) 318, 477, 900
BseGI GGATG 3 cut(s) 331, 911, 1179
BseLI CCNNNNNNNGG 3 cut(s) 849, 906, 1324
BseMI GCAATG 2 cut(s) 129, 1359
BseMII CTCAG 2 cut(s) 897, 950
BseNI ACTGG 1 cut(s) 489
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 6 cut(s) 166, 406, 428, 829, 1054, 1243
BsgI GTGCAG 1 cut(s) 389
Bsh1236I CGCG 1 cut(s) 755
BshFI GGCC 4 cut(s) 439, 735, 1062, 1607
BshVI ATCGAT 2 cut(s) 984, 1048
BsiSI CCGG 2 cut(s) 736, 900
BslFI GGGAC 2 cut(s) 575, 1342
BslI CCNNNNNNNGG 3 cut(s) 849, 906, 1324
BsmAI GTCTC 3 cut(s) 9, 72, 795
BsmFI GGGAC 2 cut(s) 575, 1342
BsmI GAATGC 2 cut(s) 98, 1354
BsnI GGCC 4 cut(s) 439, 735, 1062, 1607
Bsp119I TTCGAA 1 cut(s) 1395
Bsp1407I TGTACA 4 cut(s) 246, 381, 727, 1143
Bsp143I GATC 7 cut(s) 481, 667, 827, 988, 1167, 1278, 1310
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 4 cut(s) 685, 755, 1059, 1542
BspANI GGCC 4 cut(s) 439, 735, 1062, 1607
BspCNI CTCAG 2 cut(s) 896, 951
BspDI ATCGAT 2 cut(s) 984, 1048
BspFNI CGCG 1 cut(s) 755
BspLI GGNNCC 1 cut(s) 483
BspPI GGATC 4 cut(s) 476, 489, 662, 835
BspT104I TTCGAA 1 cut(s) 1395
BsrDI GCAATG 2 cut(s) 129, 1359
BsrFI RCCGGY 1 cut(s) 735
BsrGI TGTACA 4 cut(s) 246, 381, 727, 1143
BsrI ACTGG 1 cut(s) 489
BssAI RCCGGY 1 cut(s) 735
BssECI CCNNGG 3 cut(s) 318, 477, 900
BssMI GATC 7 cut(s) 481, 667, 827, 988, 1167, 1278, 1310
BssNI GRCGYC 1 cut(s) 870
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 6 cut(s) 66, 691, 925, 1202, 1222, 1243
Bst6I CTCTTC 2 cut(s) 52, 1399
BstACI GRCGYC 1 cut(s) 870
BstAUI TGTACA 4 cut(s) 246, 381, 727, 1143
BstBI TTCGAA 1 cut(s) 1395
BstC8I GCNNGC 5 cut(s) 349, 424, 868, 1040, 1215
BstDEI CTNAG 6 cut(s) 794, 883, 959, 1307, 1364, 1663
BstDSI CCRYGG 2 cut(s) 318, 477
BstF5I GGATG 3 cut(s) 331, 911, 1179
BstFNI CGCG 1 cut(s) 755
BstHHI GCGC 1 cut(s) 1164
BstKTI GATC 7 cut(s) 484, 670, 830, 991, 1170, 1281, 1313
BstMAI GTCTC 3 cut(s) 9, 72, 795
BstMBI GATC 7 cut(s) 481, 667, 827, 988, 1167, 1278, 1310
BstMWI GCNNNNNNNGC 3 cut(s) 348, 950, 1039
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 195, 899
BstUI CGCG 1 cut(s) 755
BstV1I GCAGC 6 cut(s) 166, 406, 428, 829, 1054, 1243
BstV2I GAAGAC 3 cut(s) 20, 178, 936
BstX2I RGATCY 2 cut(s) 481, 827
BstYI RGATCY 2 cut(s) 481, 827
Bsu15I ATCGAT 2 cut(s) 984, 1048
BsuI GTATCC 1 cut(s) 569
BsuRI GGCC 4 cut(s) 439, 735, 1062, 1607
BsuTUI ATCGAT 2 cut(s) 984, 1048
BtgI CCRYGG 2 cut(s) 318, 477
BtsCI GGATG 3 cut(s) 331, 911, 1179
BtsI GCAGTG 2 cut(s) 349, 632
BtsIMutI CAGTG 7 cut(s) 62, 99, 349, 632, 687, 956, 1608
Cac8I GCNNGC 5 cut(s) 349, 424, 868, 1040, 1215
CaiI CAGNNNCTG 1 cut(s) 1220
CfoI GCGC 1 cut(s) 1164
Cfr10I RCCGGY 1 cut(s) 735
Cfr13I GGNCC 1 cut(s) 1061
ClaI ATCGAT 2 cut(s) 984, 1048
CseI GACGC 1 cut(s) 859
Csp6I GTAC 9 cut(s) 179, 247, 382, 728, 947, 1144, 1409, 1528, 1585
CspCI CAANNNNNGTGG 2 cut(s) 719, 754
CviAII CATG 9 cut(s) 217, 226, 250, 319, 435, 766, 934, 1159, 1384
CviQI GTAC 9 cut(s) 179, 247, 382, 728, 947, 1144, 1409, 1528, 1585
DdeI CTNAG 6 cut(s) 794, 883, 959, 1307, 1364, 1663
DpnI GATC 7 cut(s) 483, 669, 829, 990, 1169, 1280, 1312
DpnII GATC 7 cut(s) 481, 667, 827, 988, 1167, 1278, 1310
DriI GACNNNNNGTC 1 cut(s) 523
EaeI YGGCCR 1 cut(s) 437
Eam1104I CTCTTC 2 cut(s) 52, 1399
Eam1105I GACNNNNNGTC 1 cut(s) 523
EarI CTCTTC 2 cut(s) 52, 1399
Eco130I CCWWGG 1 cut(s) 318
Eco32I GATATC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 195
EcoRV GATATC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 318
EcoT22I ATGCAT 1 cut(s) 767
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 9 cut(s) 220, 229, 253, 322, 438, 769, 937, 1162, 1387
FaqI GGGAC 2 cut(s) 575, 1342
FatI CATG 9 cut(s) 216, 225, 249, 318, 434, 765, 933, 1158, 1383
FauI CCCGC 1 cut(s) 748
FbaI TGATCA 1 cut(s) 1278
FblI GTMKAC 1 cut(s) 1303
Fnu4HI GCNGC 7 cut(s) 155, 417, 420, 818, 1043, 1060, 1257
FokI GGATG 3 cut(s) 338, 918, 1166
Fsp4HI GCNGC 7 cut(s) 155, 417, 420, 818, 1043, 1060, 1257
FspI TGCGCA 1 cut(s) 1163
GlaI GCGC 1 cut(s) 1163
GluI GCNGC 7 cut(s) 155, 417, 420, 818, 1043, 1060, 1257
GsuI CTGGAG 2 cut(s) 895, 1529
HaeIII GGCC 4 cut(s) 439, 735, 1062, 1607
HapII CCGG 2 cut(s) 736, 900
HgaI GACGC 1 cut(s) 859
HhaI GCGC 1 cut(s) 1164
Hin1I GRCGYC 1 cut(s) 870
Hin1II CATG 9 cut(s) 220, 229, 253, 322, 438, 769, 937, 1162, 1387
Hin6I GCGC 1 cut(s) 1162
HinP1I GCGC 1 cut(s) 1162
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HinfI GANTC 8 cut(s) 255, 445, 473, 879, 896, 1462, 1485, 1545
HpaII CCGG 2 cut(s) 736, 900
HphI GGTGA 2 cut(s) 514, 1451
Hpy166II GTNNAC 4 cut(s) 541, 751, 1304, 1585
Hpy188I TCNGA 4 cut(s) 121, 1248, 1484, 1490
Hpy188III TCNNGA 4 cut(s) 283, 671, 874, 1450
Hpy8I GTNNAC 4 cut(s) 541, 751, 1304, 1585
HpyAV CCTTC 8 cut(s) 121, 527, 593, 853, 1030, 1281, 1598, 1618
HpyCH4III ACNGT 6 cut(s) 66, 691, 925, 1202, 1222, 1243
HpyCH4IV ACGT 3 cut(s) 41, 548, 1479
HpyCH4V TGCA 8 cut(s) 347, 370, 416, 426, 765, 1259, 1352, 1501
HpyF10VI GCNNNNNNNGC 3 cut(s) 348, 950, 1039
HpyF3I CTNAG 6 cut(s) 794, 883, 959, 1307, 1364, 1663
HpySE526I ACGT 3 cut(s) 41, 548, 1479
Hsp92I GRCGYC 1 cut(s) 870
Hsp92II CATG 9 cut(s) 220, 229, 253, 322, 438, 769, 937, 1162, 1387
HspAI GCGC 1 cut(s) 1162
Ksp22I TGATCA 1 cut(s) 1278
Kzo9I GATC 7 cut(s) 481, 667, 827, 988, 1167, 1278, 1310
LmnI GCTCC 2 cut(s) 1510, 1523
Lsp1109I GCAGC 6 cut(s) 166, 406, 428, 829, 1054, 1243
LweI GCATC 2 cut(s) 640, 1054
MaeII ACGT 3 cut(s) 41, 548, 1479
MaeIII GTNAC 5 cut(s) 515, 797, 1008, 1237, 1423
MalI GATC 7 cut(s) 483, 669, 829, 990, 1169, 1280, 1312
MboI GATC 7 cut(s) 481, 667, 827, 988, 1167, 1278, 1310
MfeI CAATTG 1 cut(s) 1296
MflI RGATCY 2 cut(s) 481, 827
MlsI TGGCCA 1 cut(s) 439
MluCI AATT 5 cut(s) 138, 299, 456, 702, 1296
MluNI TGGCCA 1 cut(s) 439
MlyI GAGTC 1 cut(s) 905
MmeI TCCRAC 2 cut(s) 805, 1501
Mox20I TGGCCA 1 cut(s) 439
Mph1103I ATGCAT 1 cut(s) 767
MscI TGGCCA 1 cut(s) 439
MseI TTAA 3 cut(s) 701, 1076, 1289
MslI CAYNNNNRTG 1 cut(s) 615
Msp20I TGGCCA 1 cut(s) 439
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 2 cut(s) 736, 900
MspR9I CCNGG 2 cut(s) 197, 901
MunI CAATTG 1 cut(s) 1296
Mva1269I GAATGC 2 cut(s) 98, 1354
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 755
MwoI GCNNNNNNNGC 3 cut(s) 348, 950, 1039
NciI CCSGG 1 cut(s) 901
NcoI CCATGG 1 cut(s) 318
NdeII GATC 7 cut(s) 481, 667, 827, 988, 1167, 1278, 1310
NlaIII CATG 9 cut(s) 220, 229, 253, 322, 438, 769, 937, 1162, 1387
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 3 cut(s) 515, 1237, 1423
NsbI TGCGCA 1 cut(s) 1163
NsiI ATGCAT 1 cut(s) 767
NspV TTCGAA 1 cut(s) 1395
PctI GAATGC 2 cut(s) 98, 1354
PfeI GAWTC 7 cut(s) 255, 445, 473, 879, 1462, 1485, 1545
PflFI GACNNNGTC 1 cut(s) 1556
PflMI CCANNNNNTGG 1 cut(s) 1324
PkrI GCNGC 7 cut(s) 156, 418, 421, 819, 1044, 1061, 1258
PleI GAGTC 1 cut(s) 904
PpsI GAGTC 1 cut(s) 904
PsiI TTATAA 1 cut(s) 161
Psp1406I AACGTT 1 cut(s) 548
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 1 cut(s) 1061
PstNI CAGNNNCTG 1 cut(s) 1220
PsuI RGATCY 2 cut(s) 481, 827
PsyI GACNNNGTC 1 cut(s) 1556
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 9 cut(s) 180, 248, 383, 729, 948, 1145, 1410, 1529, 1586
RsaNI GTAC 9 cut(s) 179, 247, 382, 728, 947, 1144, 1409, 1528, 1585
RseI CAYNNNNRTG 1 cut(s) 615
SaqAI TTAA 3 cut(s) 701, 1076, 1289
SatI GCNGC 7 cut(s) 155, 417, 420, 818, 1043, 1060, 1257
Sau3AI GATC 7 cut(s) 481, 667, 827, 988, 1167, 1278, 1310
Sau96I GGNCC 1 cut(s) 1061
SchI GAGTC 1 cut(s) 905
ScrFI CCNGG 2 cut(s) 197, 901
SfaNI GCATC 2 cut(s) 640, 1054
SfuI TTCGAA 1 cut(s) 1395
SmiMI CAYNNNNRTG 1 cut(s) 615
SmlI CTYRAG 3 cut(s) 69, 992, 1448
SmoI CTYRAG 3 cut(s) 69, 992, 1448
Sse9I AATT 5 cut(s) 138, 299, 456, 702, 1296
SsiI CCGC 4 cut(s) 685, 755, 1059, 1542
StyD4I CCNGG 2 cut(s) 195, 899
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 6 cut(s) 66, 691, 925, 1202, 1222, 1243
TaiI ACGT 3 cut(s) 44, 551, 1482
TaqI TCGA 5 cut(s) 136, 443, 984, 1048, 1395
TasI AATT 5 cut(s) 138, 299, 456, 702, 1296
TatI WGTACW 5 cut(s) 246, 381, 727, 1143, 1408
TauI GCSGC 1 cut(s) 1062
TfiI GAWTC 7 cut(s) 255, 445, 473, 879, 1462, 1485, 1545
Tru1I TTAA 3 cut(s) 701, 1076, 1289
Tru9I TTAA 3 cut(s) 701, 1076, 1289
TscAI CASTG 7 cut(s) 69, 99, 349, 632, 694, 963, 1608
TseFI GTSAC 3 cut(s) 515, 1237, 1423
TseI GCWGC 6 cut(s) 154, 416, 419, 817, 1042, 1256
Tsp45I GTSAC 3 cut(s) 515, 1237, 1423
TspDTI ATGAA 2 cut(s) 402, 1147
TspGWI ACGGA 4 cut(s) 494, 588, 873, 1442
TspRI CASTG 7 cut(s) 69, 99, 349, 632, 694, 963, 1608
Tth111I GACNNNGTC 1 cut(s) 1556
Van91I CCANNNNNTGG 1 cut(s) 1324
XapI RAATTY 1 cut(s) 299
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 1303
Zsp2I ATGCAT 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.