Rw1G011390

Glucomannan 4-beta-mannosyltransferase 9-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
25606002 .. 25611137
5136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G011390.1

Sequence Viewer

Length: 1620 bp
ATGGTTAATCATGTTTATTGGTTAGTCATCACATATCACATATCACATATGACAGCTTCTTATTTAGTGGTTATGACAAAAATGGACGCGCTCGGGCTGGTTTTGCAGCTGGCGAAAGCACCACTGATCGTGCCGCTGTTGCGAGTTTTGGTGGCGGTGTGCTTGGGGATGTCTGTGTTGCTCTTTGTGGAGAAGGTTTACATGGGAATTGTCATAATGTTGGTCAAGGTTTTCAGAAGAAGACCTGAGAAGCGTTGGAAATGGGAGGCAATTAAGGATGATGTGGAGCTTGGCAATTCTGCTTACCCTATGGTTCTTGTGCAAATTCCAATGTACAATGAAAAAGAGGTTTATCAACTTTCTATTGGGGCTGCATGTGGGCTTTCATGGCCTTCTGATAGGATCGTAGTTCAAGTTCTTGATGATTCAACTGACCCACTCATTAAGGATTTGGTGGAAGTAGAAGTGCAGAGATGGGCAAGCAAAGGAATAAACATAAAGTACGAGGTCAGAGACAACAGAAAAGGGTACAAAGCAGGGGCTCTCAAAGAGGGAATGAAGCACTCTTACGTCAAACAGTGTGACTTCGTCGCCATTTTTGATGCCGACTTCCAACCTGAGCCCGATTTTCTGTGGCGCACAATCCCATTTCTCCTCCACAACCCTGATATTGCTCTTGTCCAAGCTCGCTGGAAATATGTAAACGCTGATGAGTGCTTGATGACCAGAATGCAAGAGATGTCTCTAGATTACCATTTCACAGTGGAGCAAGAAGTTGGGTCTGCTACTCATGCCTTCTTTGGTTTCAATGGCACAGCTGGAGTGTGGAGAATCACGGCCCTCAATGAGGCTGGAGGATGGAAGGACCGCACAACAGTGGAGGATATGGATTTAGCTGTCCGAGCTAGTCTTAGAGGCTGGAAGTTCGTCTATATTTCTGACCTCAAGGTGAAAAATGAATTGCCCAGTACTTTCAAAGCCTACCGTTATCAGCAGCACCGTTGGTCTTGTGGTCCAGCTAATCTCTTCCGGAAGATGGTAATGGAGATTTTAAGAAACAAGAAGGTGTCCCCATTGAAGAAGTTTCATGTGATCTACAGCTTTTTCTTTGTTCGCAAAATTGTAGCACATATTGTCACCTTTGTCTTCTACTGTGTTATTTTACCAGCAACGGTTTTGGTTCCTGAAGTTCAAGTTCCCATTTGGGGTGCTGTATACATTCCTTCTACCATTACTCTCCTCAATGCAGTTGGAACTCCTAGATCACTCCACCTATTGATTTTCTGGATTCTCTTTGAGAATGTAATGTCCCTGCACCGGACTAAGGCAACATTTATAGGCCTGTTTGAAGCAGGGAGAGTAAATGAATGGGTCGTCACCGAGAAATTGGGAGATGCTCTCAAGACAAAATCAGCTGCAAAAGCTCACAGGAAACCTCGACTAAGGATCGGAGAAAGACTCCATTTGCTTGAGCTCATTGTTGGACTCTACCTCTTCTTCTGTGGGTGCTATGATCTTGCTTATGGAAAGAACCGCTTCTTCATCTACCTTTTCCTCCAGTCCATTGCATTCTTCATTGCCGGGGTTGGTTATGTTGGCACCTTCGTCCCTAGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

539

Amino Acids

61.86

Weight (kDa)

9.3

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_3 PF13641 103 - 338 4.5e-18 Glycosyltransferase like family 2
Glycos_transf_2 PF00535 108 - 264 6.3e-11 Glycosyl transferase family 2
Glyco_trans_2_3 PF13632 197 - 389 3e-20 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1598
AccI GTMKAC 1 cut(s) 1215
AccII CGCG 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 1029
AciI CCGC 4 cut(s) 134, 155, 868, 1534
AclWI GGATC 2 cut(s) 410, 1454
AcsI RAATTY 1 cut(s) 324
AcuI CTGAAG 1 cut(s) 1206
AfaI GTAC 4 cut(s) 335, 503, 530, 970
AfiI CCNNNNNNNGG 5 cut(s) 847, 1036, 1205, 1317, 1324
AgsI TTSAA 7 cut(s) 413, 429, 808, 976, 1078, 1193, 1349
AleI CACNNNNGTG 1 cut(s) 875
Alw21I GWGCWC 1 cut(s) 1476
Alw26I GTCTC 2 cut(s) 507, 747
AlwI GGATC 2 cut(s) 410, 1454
Ama87I CYCGRG 1 cut(s) 92
Aor13HI TCCGGA 1 cut(s) 1029
AoxI GGCC 3 cut(s) 389, 837, 1339
ApeKI GCWGC 4 cut(s) 106, 371, 994, 1415
ApoI RAATTY 1 cut(s) 324
Asp700I GAANNNNTTC 1 cut(s) 1535
AspLEI GCGC 2 cut(s) 91, 639
AspS9I GGNCC 3 cut(s) 838, 865, 1013
AsuC2I CCSGG 1 cut(s) 1582
AsuHPI GGTGA 3 cut(s) 961, 1129, 1369
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 2 cut(s) 865, 1013
BanI GGYRCC 1 cut(s) 1598
BanII GRGCYC 3 cut(s) 544, 624, 1476
BarI GAAGNNNNNNTAC 2 cut(s) 551, 583
BbsI GAAGAC 2 cut(s) 247, 1138
Bbv12I GWGCWC 1 cut(s) 1476
BbvI GCAGC 4 cut(s) 118, 358, 1006, 1402
BccI CCATC 3 cut(s) 468, 852, 1030
BceAI ACGGC 1 cut(s) 852
BcnI CCSGG 1 cut(s) 1582
BcoDI GTCTC 2 cut(s) 507, 747
BfaI CTAG 4 cut(s) 746, 906, 1260, 1611
BfmI CTRYAG 1 cut(s) 1096
BisI GCNGC 5 cut(s) 107, 134, 372, 995, 1416
BlsI GCNGC 5 cut(s) 108, 135, 373, 996, 1417
BmcAI AGTACT 1 cut(s) 970
Bme1390I CCNGG 1 cut(s) 1582
Bme18I GGWCC 2 cut(s) 865, 1013
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 3 cut(s) 838, 865, 1013
BmiI GGNNCC 2 cut(s) 1182, 1600
BmrFI CCNGG 1 cut(s) 1582
BmrI ACTGGG 1 cut(s) 960
BmsI GCATC 2 cut(s) 592, 1384
BmuI ACTGGG 1 cut(s) 960
BpiI GAAGAC 2 cut(s) 247, 1138
BplI GAGNNNNNCTC 4 cut(s) 1383, 1415, 1443, 1475
BpmI CTGGAG 3 cut(s) 840, 873, 1541
Bpu10I CCTNAGC 1 cut(s) 618
BpuEI CTTGAG 3 cut(s) 929, 1385, 1490
BpuMI CCSGG 1 cut(s) 1582
BsaJI CCNNGG 1 cut(s) 1581
BsaWI WCCGGW 2 cut(s) 1029, 1317
Bsc4I CCNNNNNNNGG 5 cut(s) 847, 1036, 1205, 1317, 1324
Bse1I ACTGG 2 cut(s) 966, 1558
Bse3DI GCAATG 2 cut(s) 1563, 1575
BseAI TCCGGA 1 cut(s) 1029
BseDI CCNNGG 1 cut(s) 1581
BseGI GGATG 3 cut(s) 174, 283, 863
BseLI CCNNNNNNNGG 5 cut(s) 847, 1036, 1205, 1317, 1324
BseMI GCAATG 2 cut(s) 1563, 1575
BseMII CTCAG 2 cut(s) 237, 609
BseNI ACTGG 2 cut(s) 966, 1558
BseRI GAGGAG 2 cut(s) 644, 1229
BseXI GCAGC 4 cut(s) 118, 358, 1006, 1402
BsgI GTGCAG 2 cut(s) 488, 1298
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 3 cut(s) 391, 839, 1341
BshNI GGYRCC 1 cut(s) 1598
BsiHKAI GWGCWC 1 cut(s) 1476
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 3 cut(s) 1030, 1318, 1581
BslFI GGGAC 3 cut(s) 1054, 1294, 1592
BslI CCNNNNNNNGG 5 cut(s) 847, 1036, 1205, 1317, 1324
BsmAI GTCTC 2 cut(s) 507, 747
BsmFI GGGAC 3 cut(s) 1054, 1294, 1592
BsmI GAATGC 2 cut(s) 735, 1568
BsnI GGCC 3 cut(s) 391, 839, 1341
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 3 cut(s) 544, 624, 1476
Bsp13I TCCGGA 1 cut(s) 1029
Bsp1407I TGTACA 1 cut(s) 333
Bsp143I GATC 6 cut(s) 126, 402, 1092, 1262, 1446, 1513
BspACI CCGC 4 cut(s) 134, 155, 868, 1534
BspANI GGCC 3 cut(s) 391, 839, 1341
BspCNI CTCAG 2 cut(s) 238, 610
BspEI TCCGGA 1 cut(s) 1029
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 2 cut(s) 1182, 1600
BspPI GGATC 2 cut(s) 410, 1454
BspT107I GGYRCC 1 cut(s) 1598
BsrDI GCAATG 2 cut(s) 1563, 1575
BsrGI TGTACA 1 cut(s) 333
BsrI ACTGG 2 cut(s) 966, 1558
BssECI CCNNGG 1 cut(s) 1581
BssMI GATC 6 cut(s) 126, 402, 1092, 1262, 1446, 1513
BssNAI GTATAC 1 cut(s) 1216
Bst1107I GTATAC 1 cut(s) 1216
Bst4CI ACNGT 7 cut(s) 579, 763, 877, 986, 1001, 1154, 1174
Bst6I CTCTTC 2 cut(s) 1031, 1499
BstAUI TGTACA 1 cut(s) 333
BstC8I GCNNGC 3 cut(s) 111, 481, 688
BstDEI CTNAG 5 cut(s) 246, 618, 911, 1323, 1442
BstENI CCTNNNNNAGG 1 cut(s) 845
BstF5I GGATG 3 cut(s) 174, 283, 863
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 2 cut(s) 91, 639
BstKTI GATC 6 cut(s) 129, 405, 1095, 1265, 1449, 1516
BstMAI GTCTC 2 cut(s) 507, 747
BstMBI GATC 6 cut(s) 126, 402, 1092, 1262, 1446, 1513
BstMWI GCNNNNNNNGC 6 cut(s) 103, 139, 388, 791, 902, 1421
BstNSI RCATGY 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 1580
BstSFI CTRYAG 1 cut(s) 1096
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 4 cut(s) 118, 358, 1006, 1402
BstV2I GAAGAC 2 cut(s) 247, 1138
BstZ17I GTATAC 1 cut(s) 1216
BsuRI GGCC 3 cut(s) 391, 839, 1341
BtsCI GGATG 3 cut(s) 174, 283, 863
BtsIMutI CAGTG 4 cut(s) 122, 584, 768, 882
Cac8I GCNNGC 3 cut(s) 111, 481, 688
CfoI GCGC 2 cut(s) 91, 639
Cfr13I GGNCC 3 cut(s) 838, 865, 1013
CseI GACGC 1 cut(s) 95
Csp6I GTAC 4 cut(s) 334, 502, 529, 969
CviAII CATG 6 cut(s) 11, 202, 375, 387, 791, 1088
CviQI GTAC 4 cut(s) 334, 502, 529, 969
DdeI CTNAG 5 cut(s) 246, 618, 911, 1323, 1442
DpnI GATC 6 cut(s) 128, 404, 1094, 1264, 1448, 1515
DpnII GATC 6 cut(s) 126, 402, 1092, 1262, 1446, 1513
Eam1104I CTCTTC 2 cut(s) 1031, 1499
EarI CTCTTC 2 cut(s) 1031, 1499
Ecl136II GAGCTC 1 cut(s) 1474
Eco147I AGGCCT 1 cut(s) 1341
Eco24I GRGCYC 3 cut(s) 544, 624, 1476
Eco47I GGWCC 2 cut(s) 865, 1013
Eco53kI GAGCTC 1 cut(s) 1474
Eco57I CTGAAG 1 cut(s) 1206
Eco88I CYCGRG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 1474
EcoNI CCTNNNNNAGG 1 cut(s) 845
EcoT38I GRGCYC 3 cut(s) 544, 624, 1476
FaeI CATG 6 cut(s) 14, 205, 378, 390, 794, 1091
FalI AAGNNNNNCTT 2 cut(s) 1520, 1552
FaqI GGGAC 3 cut(s) 1054, 1294, 1592
FatI CATG 6 cut(s) 10, 201, 374, 386, 790, 1087
FauNDI CATATG 1 cut(s) 48
FblI GTMKAC 1 cut(s) 1215
Fnu4HI GCNGC 5 cut(s) 107, 134, 372, 995, 1416
FokI GGATG 3 cut(s) 181, 290, 870
FriOI GRGCYC 3 cut(s) 544, 624, 1476
Fsp4HI GCNGC 5 cut(s) 107, 134, 372, 995, 1416
FspBI CTAG 4 cut(s) 746, 906, 1260, 1611
GlaI GCGC 2 cut(s) 90, 638
GluI GCNGC 5 cut(s) 107, 134, 372, 995, 1416
GsuI CTGGAG 3 cut(s) 840, 873, 1541
HaeIII GGCC 3 cut(s) 391, 839, 1341
HapII CCGG 3 cut(s) 1030, 1318, 1581
HgaI GACGC 1 cut(s) 95
HhaI GCGC 2 cut(s) 91, 639
Hin1II CATG 6 cut(s) 14, 205, 378, 390, 794, 1091
Hin6I GCGC 2 cut(s) 89, 637
HinP1I GCGC 2 cut(s) 89, 637
HinfI GANTC 5 cut(s) 425, 831, 1288, 1458, 1485
HpaII CCGG 3 cut(s) 1030, 1318, 1581
HphI GGTGA 3 cut(s) 961, 1129, 1369
Hpy166II GTNNAC 3 cut(s) 199, 703, 1216
Hpy188I TCNGA 6 cut(s) 236, 397, 512, 902, 940, 1451
Hpy188III TCNNGA 6 cut(s) 419, 746, 1030, 1184, 1285, 1402
Hpy8I GTNNAC 3 cut(s) 199, 703, 1216
Hpy99I CGWCG 1 cut(s) 593
HpyAV CCTTC 7 cut(s) 187, 402, 805, 856, 1057, 1233, 1612
HpyCH4III ACNGT 7 cut(s) 579, 763, 877, 986, 1001, 1154, 1174
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 9 cut(s) 106, 322, 374, 469, 733, 1247, 1315, 1418, 1568
HpyF10VI GCNNNNNNNGC 6 cut(s) 103, 139, 388, 791, 902, 1421
HpyF3I CTNAG 5 cut(s) 246, 618, 911, 1323, 1442
HpySE526I ACGT 1 cut(s) 570
Hsp92II CATG 6 cut(s) 14, 205, 378, 390, 794, 1091
HspAI GCGC 2 cut(s) 89, 637
Kpn2I TCCGGA 1 cut(s) 1029
Kzo9I GATC 6 cut(s) 126, 402, 1092, 1262, 1446, 1513
LmnI GCTCC 2 cut(s) 286, 766
Lsp1109I GCAGC 4 cut(s) 118, 358, 1006, 1402
LweI GCATC 2 cut(s) 592, 1384
MaeI CTAG 4 cut(s) 746, 906, 1260, 1611
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 3 cut(s) 581, 1135, 1375
MalI GATC 6 cut(s) 128, 404, 1094, 1264, 1448, 1515
MboI GATC 6 cut(s) 126, 402, 1092, 1262, 1446, 1513
MhlI GDGCHC 3 cut(s) 544, 624, 1476
MluCI AATT 7 cut(s) 207, 270, 295, 324, 959, 1119, 1385
MlyI GAGTC 2 cut(s) 1452, 1479
MmeI TCCRAC 4 cut(s) 236, 637, 1231, 1462
MroI TCCGGA 1 cut(s) 1029
MroXI GAANNNNTTC 1 cut(s) 1535
MseI TTAA 4 cut(s) 6, 273, 444, 1052
MslI CAYNNNNRTG 1 cut(s) 875
MspA1I CMGCKG 4 cut(s) 109, 136, 818, 1415
MspI CCGG 3 cut(s) 1030, 1318, 1581
MspR9I CCNGG 1 cut(s) 1582
Mva1269I GAATGC 2 cut(s) 735, 1568
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 6 cut(s) 103, 139, 388, 791, 902, 1421
NciI CCSGG 1 cut(s) 1582
NdeI CATATG 1 cut(s) 48
NdeII GATC 6 cut(s) 126, 402, 1092, 1262, 1446, 1513
NlaIII CATG 6 cut(s) 14, 205, 378, 390, 794, 1091
NlaIV GGNNCC 2 cut(s) 1182, 1600
NmuCI GTSAC 3 cut(s) 581, 1135, 1375
NspI RCATGY 1 cut(s) 378
OliI CACNNNNGTG 1 cut(s) 875
PceI AGGCCT 1 cut(s) 1341
PctI GAATGC 2 cut(s) 735, 1568
PdmI GAANNNNTTC 1 cut(s) 1535
PfeI GAWTC 3 cut(s) 425, 831, 1288
PflFI GACNNNGTC 1 cut(s) 587
PkrI GCNGC 5 cut(s) 108, 135, 373, 996, 1417
PleI GAGTC 2 cut(s) 1452, 1479
PpsI GAGTC 2 cut(s) 1452, 1479
Psp124BI GAGCTC 1 cut(s) 1476
PspN4I GGNNCC 2 cut(s) 1182, 1600
PspPI GGNCC 3 cut(s) 838, 865, 1013
PsrI GAACNNNNNNTAC 2 cut(s) 399, 431
PsyI GACNNNGTC 1 cut(s) 587
PvuII CAGCTG 3 cut(s) 109, 818, 1415
RsaI GTAC 4 cut(s) 335, 503, 530, 970
RsaNI GTAC 4 cut(s) 334, 502, 529, 969
RseI CAYNNNNRTG 1 cut(s) 875
SacI GAGCTC 1 cut(s) 1476
SaqAI TTAA 4 cut(s) 6, 273, 444, 1052
SatI GCNGC 5 cut(s) 107, 134, 372, 995, 1416
Sau3AI GATC 6 cut(s) 126, 402, 1092, 1262, 1446, 1513
Sau96I GGNCC 3 cut(s) 838, 865, 1013
ScaI AGTACT 1 cut(s) 970
SchI GAGTC 2 cut(s) 1452, 1479
ScrFI CCNGG 1 cut(s) 1582
SduI GDGCHC 3 cut(s) 544, 624, 1476
SfaNI GCATC 2 cut(s) 592, 1384
SfcI CTRYAG 1 cut(s) 1096
SinI GGWCC 2 cut(s) 865, 1013
SmiMI CAYNNNNRTG 1 cut(s) 875
SmlI CTYRAG 3 cut(s) 944, 1400, 1469
SmoI CTYRAG 3 cut(s) 944, 1400, 1469
Sse9I AATT 7 cut(s) 207, 270, 295, 324, 959, 1119, 1385
SseBI AGGCCT 1 cut(s) 1341
SsiI CCGC 4 cut(s) 134, 155, 868, 1534
SspMI CTAG 4 cut(s) 746, 906, 1260, 1611
SstI GAGCTC 1 cut(s) 1476
StuI AGGCCT 1 cut(s) 1341
StyD4I CCNGG 1 cut(s) 1580
TaaI ACNGT 7 cut(s) 579, 763, 877, 986, 1001, 1154, 1174
TaiI ACGT 1 cut(s) 573
TaqI TCGA 1 cut(s) 1438
TasI AATT 7 cut(s) 207, 270, 295, 324, 959, 1119, 1385
TatI WGTACW 2 cut(s) 333, 968
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 3 cut(s) 425, 831, 1288
Tru1I TTAA 4 cut(s) 6, 273, 444, 1052
Tru9I TTAA 4 cut(s) 6, 273, 444, 1052
TscAI CASTG 4 cut(s) 129, 584, 768, 882
TseFI GTSAC 3 cut(s) 581, 1135, 1375
TseI GCWGC 4 cut(s) 106, 371, 994, 1415
Tsp45I GTSAC 3 cut(s) 581, 1135, 1375
TspDTI ATGAA 8 cut(s) 354, 375, 572, 972, 1076, 1380, 1531, 1564
TspRI CASTG 4 cut(s) 129, 584, 768, 882
Tth111I GACNNNGTC 1 cut(s) 587
VpaK11BI GGWCC 2 cut(s) 865, 1013
XagI CCTNNNNNAGG 1 cut(s) 845
XapI RAATTY 1 cut(s) 324
XbaI TCTAGA 1 cut(s) 745
XceI RCATGY 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 1215
XmnI GAANNNNTTC 1 cut(s) 1535
XspI CTAG 4 cut(s) 746, 906, 1260, 1611
ZrmI AGTACT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.