AT1G23710

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012761
Physical Location & Seq
Forward (+)
8385188 .. 8386522
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23710.1

Sequence Viewer

Length: 888 bp
ATGGAGGTTGCTTTTCCATCTTCGCCGCCGGTGAAATGCATCGCCGATGAAAGATTAACAGAGATCTCCATGGATTTCACCAAATTAGGATTCCCAGAAGAAGATGAAGAAATTAAAAAATTGGAGAGATCGTGGAGTAAGCTCGAAGAATCCGTCGAATTTAACGAAGACGATGAAGAAGAAGAAGAAGAGTTTTCGTTTGCTTGTGTAAACGGAGAAGGATCTCCAATTACCGCTGATGAAGCTTTTGAAGATGGTCAGATCCGTCCTGTGTTTCCTCTGTTTAACCGTGATCTTCTCTTCGAGTACGAAAACGAAGATGACAAAAACGACAACGTTTCGGTCACCGACGAGAACAGACCGCGTCTTAGAAAATTATTTGTTGAGGATCGTAACGGTAACGGTGACGGAGAGGAGACGGAGGGTTCTGAGAAAGAACCGTTGGGACCGTATTGTTCGTGGACAGGAGGAACGGTTGCAGAAGCGTCGCCGGAGACTTGCCGGAAAAGTAATTCGACGGGATTCTCAAAGCTTTGGAGATTTAGAGATCTTGTTTTGAGAAGTAACAGTGATGGAAGAGACGCGTTTGTTTTCTTGAATAATAGTAATGACAAGACTCGGACTCGGTCTTCTTCGTCGTCGTCGTCTACGGCGGCGGAGGAGAATGATAAGAAGGTAATAACAGAGAAGAAAAAGGGGAAGGAGAAAACTTCGACGTCGTCGGAGACGAAGAAGAAGACGACGACGACTAAATCGGCGCATGAGAAGCTATACATGAGAAACAGAGCGATGAAGGAAGAAGTGAAACACAGATCGTATCTTCCGTACAAACAAGTCGGGTTCTTCACTAATGTGAATGGTCTTAGCAGAAATATTCATCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

295

Amino Acids

33.65

Weight (kDa)

4.94

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 79 - 275 1.3e-41 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012761)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23710 AT1G70420
fragaria_vesca FvH4_4g34370
malus_domestica MD13G1092700.v1.1 MD16G1093500.v1.1
prunus_persica Prupe.1G253100_v2.0.a1
pyrus_communis pycom13g08060 pycom16g07950
rosa_chinensis RchiOBHm_Chr4g0443781
rosa_laevigata RLG00000005889
rosa_multiflora Rmu_sc0005632.1_g000001 Rmu_sc0036070.1_g000002
rosa_roxburghii Rroxscaffold_5G00384360
rosa_rugosa Rorug04G0347200
rosa_samantha Rh4BG418400 Rh4CG432600 Rh4DG413700
rosa_wichuraiana Rw4G035000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 719
AccI GTMKAC 1 cut(s) 647
AccII CGCG 2 cut(s) 364, 584
AciI CCGC 5 cut(s) 26, 234, 362, 653, 656
AclI AACGTT 1 cut(s) 336
AclWI GGATC 3 cut(s) 229, 256, 396
AcsI RAATTY 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 716
AfaI GTAC 2 cut(s) 308, 827
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 2 cut(s) 251, 598
AjuI GAANNNNNNNTTGG 4 cut(s) 74, 106, 425, 457
AleI CACNNNNGTG 1 cut(s) 851
AluBI AGCT 4 cut(s) 142, 245, 532, 769
AluI AGCT 4 cut(s) 142, 245, 532, 769
Alw26I GTCTC 4 cut(s) 410, 488, 573, 719
AlwI GGATC 3 cut(s) 229, 256, 396
ApoI RAATTY 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AspLEI GCGC 1 cut(s) 760
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 4 cut(s) 43, 70, 337, 416
AvaII GGWCC 1 cut(s) 446
BbsI GAAGAC 3 cut(s) 174, 621, 743
BccI CCATC 3 cut(s) 25, 248, 566
BceAI ACGGC 1 cut(s) 666
BcgI CGANNNNNNTGC 2 cut(s) 468, 502
BcoDI GTCTC 4 cut(s) 410, 488, 573, 719
BglII AGATCT 2 cut(s) 63, 547
BisI GCNGC 2 cut(s) 26, 654
BlsI GCNGC 2 cut(s) 27, 655
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 1 cut(s) 447
BmsI GCATC 1 cut(s) 48
BpiI GAAGAC 3 cut(s) 174, 621, 743
BsaHI GRCGYC 1 cut(s) 716
BsaJI CCNNGG 1 cut(s) 69
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 459, 489
Bse118I RCCGGY 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 877
BseMII CTCAG 1 cut(s) 420
BseRI GAGGAG 2 cut(s) 428, 674
Bsh1236I CGCG 2 cut(s) 364, 584
BsiSI CCGG 3 cut(s) 29, 491, 502
BslFI GGGAC 1 cut(s) 459
BsmAI GTCTC 4 cut(s) 410, 488, 573, 719
BsmBI CGTCTC 3 cut(s) 410, 573, 719
BsmFI GGGAC 1 cut(s) 459
Bsp143I GATC 8 cut(s) 63, 128, 221, 261, 292, 388, 547, 812
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 5 cut(s) 26, 234, 362, 653, 656
BspCNI CTCAG 1 cut(s) 421
BspFNI CGCG 2 cut(s) 364, 584
BspLI GGNNCC 1 cut(s) 447
BspPI GGATC 3 cut(s) 229, 256, 396
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 8 cut(s) 63, 128, 221, 261, 292, 388, 547, 812
BssNI GRCGYC 1 cut(s) 716
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 7 cut(s) 290, 398, 404, 441, 450, 475, 569
Bst6I CTCTTC 3 cut(s) 183, 305, 571
BstACI GRCGYC 1 cut(s) 716
BstDEI CTNAG 3 cut(s) 368, 429, 863
BstDSI CCRYGG 1 cut(s) 69
BstEII GGTNACC 1 cut(s) 343
BstF5I GGATG 1 cut(s) 877
BstFNI CGCG 2 cut(s) 364, 584
BstHHI GCGC 1 cut(s) 760
BstKTI GATC 8 cut(s) 66, 131, 224, 264, 295, 391, 550, 815
BstMAI GTCTC 4 cut(s) 410, 488, 573, 719
BstMBI GATC 8 cut(s) 63, 128, 221, 261, 292, 388, 547, 812
BstMWI GCNNNNNNNGC 2 cut(s) 242, 766
BstPI GGTNACC 1 cut(s) 343
BstUI CGCG 2 cut(s) 364, 584
BstV2I GAAGAC 3 cut(s) 174, 621, 743
BstX2I RGATCY 4 cut(s) 63, 221, 261, 547
BstYI RGATCY 4 cut(s) 63, 221, 261, 547
BtgI CCRYGG 1 cut(s) 69
BtgZI GCGATG 2 cut(s) 25, 803
BtsCI GGATG 1 cut(s) 877
BtsIMutI CAGTG 1 cut(s) 574
CfoI GCGC 1 cut(s) 760
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 446
CseI GACGC 3 cut(s) 353, 474, 590
Csp6I GTAC 2 cut(s) 307, 826
CviAII CATG 3 cut(s) 70, 761, 775
CviJI RGCY 4 cut(s) 142, 245, 532, 769
CviKI_1 RGCY 4 cut(s) 142, 245, 532, 769
CviQI GTAC 2 cut(s) 307, 826
DdeI CTNAG 3 cut(s) 368, 429, 863
DpnI GATC 8 cut(s) 65, 130, 223, 263, 294, 390, 549, 814
DpnII GATC 8 cut(s) 63, 128, 221, 261, 292, 388, 547, 812
Eam1104I CTCTTC 3 cut(s) 183, 305, 571
EarI CTCTTC 3 cut(s) 183, 305, 571
EciI GGCGGA 1 cut(s) 671
Eco130I CCWWGG 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 446
Eco91I GGTNACC 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 69
Esp3I CGTCTC 3 cut(s) 410, 573, 719
FaeI CATG 3 cut(s) 73, 764, 778
FaiI YATR 4 cut(s) 71, 762, 772, 776
FaqI GGGAC 1 cut(s) 459
FatI CATG 3 cut(s) 69, 760, 774
FblI GTMKAC 1 cut(s) 647
Fnu4HI GCNGC 2 cut(s) 26, 654
FokI GGATG 1 cut(s) 864
Fsp4HI GCNGC 2 cut(s) 26, 654
GlaI GCGC 1 cut(s) 759
GluI GCNGC 2 cut(s) 26, 654
HapII CCGG 3 cut(s) 29, 491, 502
HgaI GACGC 3 cut(s) 353, 474, 590
HhaI GCGC 1 cut(s) 760
Hin1I GRCGYC 1 cut(s) 716
Hin1II CATG 3 cut(s) 73, 764, 778
Hin6I GCGC 1 cut(s) 758
HinP1I GCGC 1 cut(s) 758
HindIII AAGCTT 2 cut(s) 243, 530
HinfI GANTC 5 cut(s) 90, 149, 522, 616, 622
HpaII CCGG 3 cut(s) 29, 491, 502
HphI GGTGA 4 cut(s) 43, 70, 337, 416
Hpy166II GTNNAC 3 cut(s) 211, 462, 648
Hpy188I TCNGA 5 cut(s) 261, 430, 621, 724, 887
Hpy188III TCNNGA 1 cut(s) 595
Hpy8I GTNNAC 3 cut(s) 211, 462, 648
HpyAV CCTTC 4 cut(s) 212, 667, 694, 787
HpyCH4III ACNGT 7 cut(s) 290, 398, 404, 441, 450, 475, 569
HpyCH4IV ACGT 2 cut(s) 336, 716
HpyCH4V TGCA 2 cut(s) 39, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 766
HpyF3I CTNAG 3 cut(s) 368, 429, 863
HpySE526I ACGT 2 cut(s) 336, 716
Hsp92I GRCGYC 1 cut(s) 716
Hsp92II CATG 3 cut(s) 73, 764, 778
HspAI GCGC 1 cut(s) 758
Kzo9I GATC 8 cut(s) 63, 128, 221, 261, 292, 388, 547, 812
LpnPI CCDG 6 cut(s) 42, 108, 282, 450, 504, 515
LweI GCATC 1 cut(s) 48
MaeII ACGT 2 cut(s) 336, 716
MaeIII GTNAC 5 cut(s) 343, 392, 398, 404, 563
MalI GATC 8 cut(s) 65, 130, 223, 263, 294, 390, 549, 814
MboI GATC 8 cut(s) 63, 128, 221, 261, 292, 388, 547, 812
MflI RGATCY 4 cut(s) 63, 221, 261, 547
MluCI AATT 7 cut(s) 83, 111, 119, 158, 228, 374, 511
MluI ACGCGT 1 cut(s) 582
MlyI GAGTC 2 cut(s) 610, 616
MmeI TCCRAC 1 cut(s) 702
MnlI CCTC 6 cut(s) 288, 379, 406, 415, 461, 652
Mph1103I ATGCAT 1 cut(s) 41
MseI TTAA 4 cut(s) 56, 114, 162, 285
MslI CAYNNNNRTG 1 cut(s) 851
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 3 cut(s) 29, 491, 502
MvnI CGCG 2 cut(s) 364, 584
MwoI GCNNNNNNNGC 2 cut(s) 242, 766
NcoI CCATGG 1 cut(s) 69
NdeII GATC 8 cut(s) 63, 128, 221, 261, 292, 388, 547, 812
NlaIII CATG 3 cut(s) 73, 764, 778
NlaIV GGNNCC 1 cut(s) 447
NmuCI GTSAC 2 cut(s) 343, 404
NsiI ATGCAT 1 cut(s) 41
OliI CACNNNNGTG 1 cut(s) 851
PcsI WCGNNNNNNNCGW 5 cut(s) 150, 162, 641, 725, 821
PfeI GAWTC 3 cut(s) 90, 149, 522
PflFI GACNNNGTC 3 cut(s) 363, 625, 718
PkrI GCNGC 2 cut(s) 27, 655
PleI GAGTC 2 cut(s) 610, 616
PpsI GAGTC 2 cut(s) 610, 616
Psp1406I AACGTT 1 cut(s) 336
PspEI GGTNACC 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 1 cut(s) 446
PsuI RGATCY 4 cut(s) 63, 221, 261, 547
PsyI GACNNNGTC 3 cut(s) 363, 625, 718
RsaI GTAC 2 cut(s) 308, 827
RsaNI GTAC 2 cut(s) 307, 826
RseI CAYNNNNRTG 1 cut(s) 851
SaqAI TTAA 4 cut(s) 56, 114, 162, 285
SatI GCNGC 2 cut(s) 26, 654
Sau3AI GATC 8 cut(s) 63, 128, 221, 261, 292, 388, 547, 812
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 2 cut(s) 610, 616
SetI ASST 8 cut(s) 9, 144, 247, 339, 534, 678, 719, 771
SfaNI GCATC 1 cut(s) 48
SgrAI CRCCGGYG 1 cut(s) 28
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 851
Sse9I AATT 7 cut(s) 83, 111, 119, 158, 228, 374, 511
SsiI CCGC 5 cut(s) 26, 234, 362, 653, 656
SspI AATATT 1 cut(s) 874
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 7 cut(s) 290, 398, 404, 441, 450, 475, 569
TaiI ACGT 2 cut(s) 339, 719
TaqI TCGA 5 cut(s) 144, 156, 303, 515, 713
TaqII GACCGA 2 cut(s) 331, 615
TasI AATT 7 cut(s) 83, 111, 119, 158, 228, 374, 511
TauI GCSGC 2 cut(s) 28, 656
TfiI GAWTC 3 cut(s) 90, 149, 522
Tru1I TTAA 4 cut(s) 56, 114, 162, 285
Tru9I TTAA 4 cut(s) 56, 114, 162, 285
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 2 cut(s) 343, 404
Tsp45I GTSAC 2 cut(s) 343, 404
TspDTI ATGAA 6 cut(s) 63, 120, 189, 255, 806, 866
TspGWI ACGGA 6 cut(s) 142, 228, 254, 423, 434, 813
TspRI CASTG 1 cut(s) 574
Tth111I GACNNNGTC 3 cut(s) 363, 625, 718
VpaK11BI GGWCC 1 cut(s) 446
XapI RAATTY 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 647
ZraI GACGTC 1 cut(s) 717
Zsp2I ATGCAT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.