Rmu_sc0036070.1_g000002

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036070.1
OG0012761
Physical Location & Seq
Forward (+)
2529 .. 3384
856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036070.1_g000002.1.cds

Sequence Viewer

Length: 856 bp
atgcaagcgatttcggttccggcttcgtctccgagtttggattcttacgtcaattcaaagaacaatttcgaatattcgcagctctctgcgaatttcaccgctagcgtcaaagtctcagagcacgtaaaacgcacagcttcaggtgaggaagagaaaccagagaaggaaacgcaaaatgacgtcgctgctgtagatgaggacgagatagaagtagaagaagaggaagaggaagaggagttctcgtttttctgcacgaatcccgacggatcaccgatttcagccgacgacgcgttccaggacggccagatccggccggtgtatccgattttcaaccgggatctcctcttcgccgacgcctacgacggcgattcttctttccgccagaaagaggcttcctcttcttcgtctctaaggccgccattgaaaaagctcttcttcgaagaccgcgacgctccatcgtcgtcggcctccgaatccgacgagcttgaagccgtcccggagggaagctactgcgagtggtccaagaacgccaaggaagtctcgccggagctccgaaacaacaagagcaattccaccgggtcctccaaactctggagaatcagggacttggttcctcggagcaacagcgacggcaaggacgcgttcgtgttcctgaaccctaattcggcgacccctaagcaaaataaaacggctgcggctgcggcggcggtggccgcgaaggccgctaagagcgtaaagccggtggagaaagctcaggggcaaaagggtaaaaaggccgaaacggtgtcgtcggcgcacgagaagcattacgtgatgaacagagcgaagaaggaaggggataaacgacggtcgtatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

285

Amino Acids

31.37

Weight (kDa)

5.03

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012761)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23710 AT1G70420
fragaria_vesca FvH4_4g34370
malus_domestica MD13G1092700.v1.1 MD16G1093500.v1.1
prunus_persica Prupe.1G253100_v2.0.a1
pyrus_communis pycom13g08060 pycom16g07950
rosa_chinensis RchiOBHm_Chr4g0443781
rosa_laevigata RLG00000005889
rosa_multiflora Rmu_sc0005632.1_g000001 Rmu_sc0036070.1_g000002
rosa_roxburghii Rroxscaffold_5G00384360
rosa_rugosa Rorug04G0347200
rosa_samantha Rh4BG418400 Rh4CG432600 Rh4DG413700
rosa_wichuraiana Rw4G035000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
AccB7I CCANNNNNTGG 1 cut(s) 591
AccII CGCG 4 cut(s) 290, 447, 641, 716
AclWI GGATC 3 cut(s) 274, 301, 345
AcoI YGGCCR 3 cut(s) 301, 311, 711
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 2 cut(s) 180, 354
AfiI CCNNNNNNNGG 3 cut(s) 388, 591, 664
AflIII ACRYGT 2 cut(s) 288, 639
AgsI TTSAA 4 cut(s) 57, 331, 424, 488
AjnI CCWGG 1 cut(s) 294
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 7 cut(s) 82, 137, 430, 484, 507, 550, 752
AluI AGCT 7 cut(s) 82, 137, 430, 484, 507, 550, 752
Alw21I GWGCWC 2 cut(s) 123, 552
Alw26I GTCTC 4 cut(s) 33, 118, 411, 544
AlwI GGATC 3 cut(s) 274, 301, 345
AoxI GGCC 7 cut(s) 301, 311, 413, 465, 711, 720, 774
ApeKI GCWGC 4 cut(s) 79, 185, 692, 698
ApoI RAATTY 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 796
AspS9I GGNCC 2 cut(s) 519, 579
AsuC2I CCSGG 3 cut(s) 335, 497, 577
AsuHPI GGTGA 3 cut(s) 88, 155, 261
AsuII TTCGAA 2 cut(s) 69, 438
AsuNHI GCTAGC 1 cut(s) 101
AvaII GGWCC 2 cut(s) 519, 579
BanII GRGCYC 1 cut(s) 552
BauI CACGAG 1 cut(s) 797
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 2 cut(s) 123, 552
BbvI GCAGC 4 cut(s) 91, 172, 679, 685
BccI CCATC 1 cut(s) 463
BceAI ACGGC 5 cut(s) 316, 379, 476, 646, 705
BciT130I CCWGG 1 cut(s) 296
BciVI GTATCC 1 cut(s) 330
BcnI CCSGG 3 cut(s) 335, 497, 577
BcoDI GTCTC 4 cut(s) 33, 118, 411, 544
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 189
BfuI GTATCC 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 719
Bme1390I CCNGG 4 cut(s) 296, 335, 497, 577
Bme18I GGWCC 2 cut(s) 519, 579
BmgT120I GGNCC 2 cut(s) 519, 579
BmiI GGNNCC 3 cut(s) 18, 580, 612
BmrFI CCNGG 4 cut(s) 296, 335, 497, 577
BmtI GCTAGC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 447
BplI GAGNNNNNCTC 4 cut(s) 224, 256, 380, 412
BpmI CTGGAG 1 cut(s) 613
Bpu10I CCTNAGC 2 cut(s) 675, 753
Bpu14I TTCGAA 2 cut(s) 69, 438
BpuMI CCSGG 3 cut(s) 335, 497, 577
BsaAI YACGTR 2 cut(s) 124, 811
BsaHI GRCGYC 2 cut(s) 180, 354
BsaJI CCNNGG 2 cut(s) 531, 614
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 3 cut(s) 388, 591, 664
Bse118I RCCGGY 2 cut(s) 313, 739
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 531, 614
BseLI CCNNNNNNNGG 3 cut(s) 388, 591, 664
BseMII CTCAG 2 cut(s) 129, 767
BseRI GAGGAG 2 cut(s) 248, 332
BseX3I CGGCCG 1 cut(s) 311
BseXI GCAGC 4 cut(s) 91, 172, 679, 685
BsgI GTGCAG 1 cut(s) 235
Bsh1236I CGCG 4 cut(s) 290, 447, 641, 716
Bsh1285I CGRYCG 2 cut(s) 314, 851
BshFI GGCC 7 cut(s) 303, 313, 415, 467, 713, 722, 776
BsiEI CGRYCG 2 cut(s) 314, 851
BsiHKAI GWGCWC 2 cut(s) 123, 552
BsiSI CCGG 8 cut(s) 20, 310, 314, 334, 497, 545, 576, 740
BslFI GGGAC 2 cut(s) 479, 617
BslI CCNNNNNNNGG 3 cut(s) 388, 591, 664
BsmAI GTCTC 4 cut(s) 33, 118, 411, 544
BsmBI CGTCTC 2 cut(s) 33, 411
BsmFI GGGAC 2 cut(s) 479, 617
BsnI GGCC 7 cut(s) 303, 313, 415, 467, 713, 722, 776
Bsp119I TTCGAA 2 cut(s) 69, 438
Bsp1286I GDGCHC 2 cut(s) 123, 552
Bsp143I GATC 3 cut(s) 266, 306, 337
BspANI GGCC 7 cut(s) 303, 313, 415, 467, 713, 722, 776
BspCNI CTCAG 2 cut(s) 128, 766
BspFNI CGCG 4 cut(s) 290, 447, 641, 716
BspLI GGNNCC 3 cut(s) 18, 580, 612
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 3 cut(s) 274, 301, 345
BspQI GCTCTTC 1 cut(s) 437
BspT104I TTCGAA 2 cut(s) 69, 438
BsrFI RCCGGY 2 cut(s) 313, 739
BssAI RCCGGY 2 cut(s) 313, 739
BssECI CCNNGG 2 cut(s) 531, 614
BssMI GATC 3 cut(s) 266, 306, 337
BssNI GRCGYC 2 cut(s) 180, 354
BssSI CACGAG 1 cut(s) 797
BssT1I CCWWGG 1 cut(s) 531
Bst2BI CACGAG 1 cut(s) 797
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 784, 849
Bst6I CTCTTC 7 cut(s) 144, 213, 219, 225, 350, 403, 437
BstACI GRCGYC 2 cut(s) 180, 354
BstBAI YACGTR 2 cut(s) 124, 811
BstBI TTCGAA 2 cut(s) 69, 438
BstC8I GCNNGC 2 cut(s) 6, 103
BstDEI CTNAG 5 cut(s) 115, 410, 675, 726, 753
BstFNI CGCG 4 cut(s) 290, 447, 641, 716
BstHHI GCGC 1 cut(s) 796
BstKTI GATC 3 cut(s) 269, 309, 340
BstMAI GTCTC 4 cut(s) 33, 118, 411, 544
BstMBI GATC 3 cut(s) 266, 306, 337
BstMCI CGRYCG 2 cut(s) 314, 851
BstMWI GCNNNNNNNGC 9 cut(s) 287, 698, 701, 704, 710, 713, 719, 722, 802
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 4 cut(s) 294, 333, 495, 575
BstSFI CTRYAG 1 cut(s) 189
BstUI CGCG 4 cut(s) 290, 447, 641, 716
BstV1I GCAGC 4 cut(s) 91, 172, 679, 685
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 2 cut(s) 306, 337
BstYI RGATCY 2 cut(s) 306, 337
BstZI CGGCCG 1 cut(s) 311
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 7 cut(s) 303, 313, 415, 467, 713, 722, 776
Cac8I GCNNGC 2 cut(s) 6, 103
CfoI GCGC 1 cut(s) 796
Cfr10I RCCGGY 2 cut(s) 313, 739
Cfr13I GGNCC 2 cut(s) 519, 579
CseI GACGC 5 cut(s) 94, 296, 362, 458, 647
DdeI CTNAG 5 cut(s) 115, 410, 675, 726, 753
DpnI GATC 3 cut(s) 268, 308, 339
DpnII GATC 3 cut(s) 266, 306, 337
EaeI YGGCCR 3 cut(s) 301, 311, 711
EagI CGGCCG 1 cut(s) 311
Eam1104I CTCTTC 7 cut(s) 144, 213, 219, 225, 350, 403, 437
EarI CTCTTC 7 cut(s) 144, 213, 219, 225, 350, 403, 437
EciI GGCGGA 1 cut(s) 368
Ecl136II GAGCTC 1 cut(s) 550
EclXI CGGCCG 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 531
Eco24I GRGCYC 1 cut(s) 552
Eco47I GGWCC 2 cut(s) 519, 579
Eco52I CGGCCG 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 550
EcoO109I RGGNCCY 1 cut(s) 579
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 531
EcoT38I GRGCYC 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 531
Esp3I CGTCTC 2 cut(s) 33, 411
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 2 cut(s) 479, 617
FriOI GRGCYC 1 cut(s) 552
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 795
GsuI CTGGAG 1 cut(s) 613
HaeIII GGCC 7 cut(s) 303, 313, 415, 467, 713, 722, 776
HapII CCGG 8 cut(s) 20, 310, 314, 334, 497, 545, 576, 740
HgaI GACGC 5 cut(s) 94, 296, 362, 458, 647
HhaI GCGC 1 cut(s) 796
Hin1I GRCGYC 2 cut(s) 180, 354
Hin6I GCGC 1 cut(s) 794
HinP1I GCGC 1 cut(s) 794
HinfI GANTC 5 cut(s) 41, 256, 368, 473, 597
HpaII CCGG 8 cut(s) 20, 310, 314, 334, 497, 545, 576, 740
HphI GGTGA 3 cut(s) 88, 155, 261
Hpy188I TCNGA 7 cut(s) 33, 118, 324, 472, 478, 554, 618
Hpy188III TCNNGA 3 cut(s) 260, 592, 652
HpyAV CCTTC 4 cut(s) 157, 712, 823, 827
HpyCH4III ACNGT 2 cut(s) 784, 849
HpyCH4IV ACGT 4 cut(s) 48, 123, 180, 810
HpyCH4V TGCA 2 cut(s) 4, 252
HpyF10VI GCNNNNNNNGC 9 cut(s) 287, 698, 701, 704, 710, 713, 719, 722, 802
HpyF3I CTNAG 5 cut(s) 115, 410, 675, 726, 753
HpySE526I ACGT 4 cut(s) 48, 123, 180, 810
Hsp92I GRCGYC 2 cut(s) 180, 354
HspAI GCGC 1 cut(s) 794
Kzo9I GATC 3 cut(s) 266, 306, 337
LguI GCTCTTC 1 cut(s) 437
LmnI GCTCC 4 cut(s) 457, 547, 555, 618
Lsp1109I GCAGC 4 cut(s) 91, 172, 679, 685
MaeI CTAG 1 cut(s) 102
MaeII ACGT 4 cut(s) 48, 123, 180, 810
MalI GATC 3 cut(s) 268, 308, 339
MboI GATC 3 cut(s) 266, 306, 337
MflI RGATCY 2 cut(s) 306, 337
MhlI GDGCHC 2 cut(s) 123, 552
MluCI AATT 5 cut(s) 52, 64, 91, 568, 661
MluI ACGCGT 2 cut(s) 288, 639
MmeI TCCRAC 1 cut(s) 501
MroXI GAANNNNTTC 1 cut(s) 65
MspI CCGG 8 cut(s) 20, 310, 314, 334, 497, 545, 576, 740
MspR9I CCNGG 4 cut(s) 296, 335, 497, 577
MvaI CCWGG 1 cut(s) 296
MvnI CGCG 4 cut(s) 290, 447, 641, 716
MwoI GCNNNNNNNGC 9 cut(s) 287, 698, 701, 704, 710, 713, 719, 722, 802
NciI CCSGG 3 cut(s) 335, 497, 577
NdeII GATC 3 cut(s) 266, 306, 337
NheI GCTAGC 1 cut(s) 101
NlaIV GGNNCC 3 cut(s) 18, 580, 612
NspV TTCGAA 2 cut(s) 69, 438
PciSI GCTCTTC 1 cut(s) 437
PcsI WCGNNNNNNNCGW 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 5 cut(s) 41, 256, 368, 473, 597
PflMI CCANNNNNTGG 1 cut(s) 591
PfoI TCCNGGA 2 cut(s) 294, 495
Ppu21I YACGTR 2 cut(s) 124, 811
PpuMI RGGWCCY 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 579
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 3 cut(s) 18, 580, 612
PspPI GGNCC 2 cut(s) 519, 579
PspPPI RGGWCCY 1 cut(s) 579
PsuI RGATCY 2 cut(s) 306, 337
SacI GAGCTC 1 cut(s) 552
SapI GCTCTTC 1 cut(s) 437
Sau3AI GATC 3 cut(s) 266, 306, 337
Sau96I GGNCC 2 cut(s) 519, 579
ScrFI CCNGG 4 cut(s) 296, 335, 497, 577
SduI GDGCHC 2 cut(s) 123, 552
SfcI CTRYAG 1 cut(s) 189
SfiI GGCCNNNNNGGCC 1 cut(s) 719
SfuI TTCGAA 2 cut(s) 69, 438
SinI GGWCC 2 cut(s) 519, 579
Sse9I AATT 5 cut(s) 52, 64, 91, 568, 661
SspI AATATT 1 cut(s) 74
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 4 cut(s) 294, 333, 495, 575
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 2 cut(s) 784, 849
TaiI ACGT 4 cut(s) 51, 126, 183, 813
TaqI TCGA 2 cut(s) 69, 438
TasI AATT 5 cut(s) 52, 64, 91, 568, 661
TauI GCSGC 6 cut(s) 418, 698, 704, 707, 716, 725
TfiI GAWTC 5 cut(s) 41, 256, 368, 473, 597
TseI GCWGC 4 cut(s) 79, 185, 692, 698
TspDTI ATGAA 1 cut(s) 830
TspGWI ACGGA 1 cut(s) 279
Van91I CCANNNNNTGG 1 cut(s) 591
VpaK11BI GGWCC 2 cut(s) 519, 579
XapI RAATTY 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 102
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.