Rorug04G0347200

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012761
Physical Location & Seq
Forward (+)
51984456 .. 51987419
2964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0347200.1

Sequence Viewer

Length: 1179 bp
ATGTGGTGGATGATGGGTGAAGGAGGAGGTCCTTACTGCTCTAAGAAGACTGACGATTACTGCGCTGATGTTTGTGGCCAGGAATCAGGTAGACTATTAAGCATGTCAAGAGTCCGCTGCATTCTCCGTGGATTTGATATAAGAGCTCTCATCCTTCTCATTATGCTTATTCCGACATGCATCTTTGGCATATATGCGCATGGACAGAAGATCTCATACTTCTTGCGGCCACTATGGGAATCACCACCCAAACCTTTCCATGATATCCCACACTACTATCACGAGAATGTGTCAATGGAGAACCTCTGCAAACTTCACGGTTGGGGCATCCGCGAGTACCCTAGGCGTGTCTATGATGCTGTGTTGTTCAGTAATGAGATGGACATCCTTACAATACGATGGAAAGAATTGTATCCCTACATAACGAAATTTGTTCTCCTGGAGTCAAATTCAACATTTTCTGGAATTTTCAAGCCTCTGCATTTTGCAAAGAATCGGGAGCAGTTCGATTTTGTTGAACCCCGGTTGGAATATGCGACAGTTGGAAGAACAGCCAAGAAAGGGGACAACCCATTTGTTGAGGAGGCATATCAGCGGCTACAATTGGACAACCTTCTCAAACTAGCTGGTATTACTGACGACGACTTGTTGATAATGTCGGATGTTGATGAGATCCCAAGCAGACACACTATCAATCTCCTGAGGTGGTGTGATGATATTCCTGAAGTCCTTCATCTTCGGCTGAAGAACTATCTTTATTCCTTTGAGTTTCTTGTGGACAATAACAGTTGGAGGGCCTCAGTACACAGGTATCGAGAGAATGTGACCAAATATGCGCATTTTCGCCAGACAGATGACGTCCTGGCAGATGCAGGGTGGCATTGCAGCTTTTGTTTTCGCAAAATCAGTGAGTTCATATTTAAGATGAAGGCATACAGCCACAATGATCGTATCAGATTTAATAAGTATCTCAACCCTAAAAGAGTTCAGGAAGTAATCTGCAACGGAGACGATCTGTTTGATATGCTTCCAGAAGAGTACACATTCAAGGAAATCATCGGCAAAATGGGCCCTATTCCTCATTCCTACTCAGCTGTTCATCTCCCATCCTATCTGTTGGAGAATGCAGAGAAGTATAAATTCTTGTTGCCTGGGAATTGCAGAAGAGATAGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

392

Amino Acids

46.32

Weight (kDa)

6.92

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 45 - 390 8e-184 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012761)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23710 AT1G70420
fragaria_vesca FvH4_4g34370
malus_domestica MD13G1092700.v1.1 MD16G1093500.v1.1
prunus_persica Prupe.1G253100_v2.0.a1
pyrus_communis pycom13g08060 pycom16g07950
rosa_chinensis RchiOBHm_Chr4g0443781
rosa_laevigata RLG00000005889
rosa_multiflora Rmu_sc0005632.1_g000001 Rmu_sc0036070.1_g000002
rosa_roxburghii Rroxscaffold_5G00384360
rosa_rugosa Rorug04G0347200
rosa_samantha Rh4BG418400 Rh4CG432600 Rh4DG413700
rosa_wichuraiana Rw4G035000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 861
Acc16I TGCGCA 2 cut(s) 198, 837
AccI GTMKAC 1 cut(s) 91
AccII CGCG 1 cut(s) 333
AciI CCGC 4 cut(s) 115, 226, 331, 595
AclWI GGATC 1 cut(s) 667
AcoI YGGCCR 2 cut(s) 76, 227
AcsI RAATTY 4 cut(s) 428, 448, 465, 1139
AcuI CTGAAG 2 cut(s) 744, 764
AcyI GRCGYC 1 cut(s) 858
AfaI GTAC 3 cut(s) 338, 804, 1040
AfiI CCNNNNNNNGG 1 cut(s) 561
AgsI TTSAA 4 cut(s) 453, 472, 518, 1048
AjnI CCWGG 4 cut(s) 78, 438, 861, 1150
AluBI AGCT 4 cut(s) 146, 626, 888, 1094
AluI AGCT 4 cut(s) 146, 626, 888, 1094
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 1002
AlwI GGATC 1 cut(s) 667
AoxI GGCC 4 cut(s) 76, 227, 795, 1069
ApaI GGGCCC 1 cut(s) 1073
ApeKI GCWGC 2 cut(s) 117, 885
ApoI RAATTY 4 cut(s) 428, 448, 465, 1139
ArsI GACNNNNNNTTYG 4 cut(s) 557, 589, 1001, 1033
Asp700I GAANNNNTTC 1 cut(s) 729
AspA2I CCTAGG 1 cut(s) 341
AspLEI GCGC 3 cut(s) 65, 199, 838
AspS9I GGNCC 4 cut(s) 29, 795, 1069, 1070
AsuC2I CCSGG 1 cut(s) 523
AsuHPI GGTGA 2 cut(s) 29, 234
AvaII GGWCC 1 cut(s) 29
AvrII CCTAGG 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 701
BaeGI GKGCMC 1 cut(s) 1073
BaeI ACNNNNGTAYC 2 cut(s) 794, 827
BalI TGGCCA 1 cut(s) 78
BanII GRGCYC 2 cut(s) 148, 1073
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BauI CACGAG 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 104, 897
BccI CCATC 4 cut(s) 7, 373, 393, 1114
BciT130I CCWGG 4 cut(s) 80, 440, 863, 1152
BciVI GTATCC 1 cut(s) 423
BcnI CCSGG 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 1002
BfaI CTAG 2 cut(s) 342, 623
BfuI GTATCC 1 cut(s) 423
BglII AGATCT 1 cut(s) 210
BisI GCNGC 4 cut(s) 118, 227, 596, 886
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 4 cut(s) 119, 228, 597, 887
Bme1390I CCNGG 5 cut(s) 80, 440, 523, 863, 1152
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 4 cut(s) 29, 795, 1069, 1070
BmiI GGNNCC 1 cut(s) 1071
BmrFI CCNGG 5 cut(s) 80, 440, 523, 863, 1152
BmsI GCATC 4 cut(s) 189, 336, 346, 859
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 523
BsaBI GATNNNNATC 1 cut(s) 383
BsaHI GRCGYC 1 cut(s) 858
BsaJI CCNNGG 4 cut(s) 127, 341, 521, 1151
Bsc4I CCNNNNNNNGG 1 cut(s) 561
Bse21I CCTNAGG 1 cut(s) 701
Bse3DI GCAATG 1 cut(s) 880
Bse8I GATNNNNATC 1 cut(s) 383
BseBI CCWGG 4 cut(s) 80, 440, 863, 1152
BseDI CCNNGG 4 cut(s) 127, 341, 521, 1151
BseGI GGATG 6 cut(s) 15, 150, 327, 384, 667, 1106
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 1 cut(s) 561
BseMI GCAATG 1 cut(s) 880
BseMII CTCAG 3 cut(s) 692, 813, 1104
BseRI GAGGAG 2 cut(s) 39, 596
BseSI GKGCMC 1 cut(s) 1073
BseXI GCAGC 2 cut(s) 104, 897
Bsh1236I CGCG 1 cut(s) 333
BshFI GGCC 4 cut(s) 78, 229, 797, 1071
BsiHKAI GWGCWC 1 cut(s) 148
BsiSI CCGG 1 cut(s) 523
BslFI GGGAC 1 cut(s) 578
BslI CCNNNNNNNGG 1 cut(s) 561
BsmAI GTCTC 1 cut(s) 1002
BsmBI CGTCTC 1 cut(s) 1002
BsmFI GGGAC 1 cut(s) 578
BsmI GAATGC 2 cut(s) 120, 1129
BsnI GGCC 4 cut(s) 78, 229, 797, 1071
Bsp120I GGGCCC 1 cut(s) 1069
Bsp1286I GDGCHC 2 cut(s) 148, 1073
Bsp143I GATC 4 cut(s) 210, 672, 946, 1012
BspACI CCGC 4 cut(s) 115, 226, 331, 595
BspANI GGCC 4 cut(s) 78, 229, 797, 1071
BspCNI CTCAG 3 cut(s) 693, 812, 1103
BspFNI CGCG 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 1071
BspPI GGATC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 880
BssECI CCNNGG 4 cut(s) 127, 341, 521, 1151
BssMI GATC 4 cut(s) 210, 672, 946, 1012
BssNI GRCGYC 1 cut(s) 858
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 4 cut(s) 80, 440, 863, 1152
Bst4CI ACNGT 3 cut(s) 320, 541, 788
Bst6I CTCTTC 2 cut(s) 1029, 1159
BstACI GRCGYC 1 cut(s) 858
BstDEI CTNAG 4 cut(s) 42, 701, 799, 1090
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 6 cut(s) 15, 150, 327, 384, 667, 1106
BstFNI CGCG 1 cut(s) 333
BstHHI GCGC 3 cut(s) 65, 199, 838
BstKTI GATC 4 cut(s) 213, 675, 949, 1015
BstMAI GTCTC 1 cut(s) 1002
BstMBI GATC 4 cut(s) 210, 672, 946, 1012
BstMWI GCNNNNNNNGC 2 cut(s) 186, 1068
BstNI CCWGG 4 cut(s) 80, 440, 863, 1152
BstNSI RCATGY 2 cut(s) 106, 180
BstSCI CCNGG 5 cut(s) 78, 438, 521, 861, 1150
BstSLI GKGCMC 1 cut(s) 1073
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 104, 897
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 2 cut(s) 210, 672
BstYI RGATCY 2 cut(s) 210, 672
Bsu36I CCTNAGG 1 cut(s) 701
BsuI GTATCC 1 cut(s) 423
BsuRI GGCC 4 cut(s) 78, 229, 797, 1071
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 6 cut(s) 15, 150, 327, 384, 667, 1106
BtsIMutI CAGTG 1 cut(s) 913
CfoI GCGC 3 cut(s) 65, 199, 838
Cfr13I GGNCC 4 cut(s) 29, 795, 1069, 1070
Csp6I GTAC 3 cut(s) 337, 803, 1039
CviAII CATG 4 cut(s) 103, 177, 200, 260
CviQI GTAC 3 cut(s) 337, 803, 1039
DdeI CTNAG 4 cut(s) 42, 701, 799, 1090
DpnI GATC 4 cut(s) 212, 674, 948, 1014
DpnII GATC 4 cut(s) 210, 672, 946, 1012
EaeI YGGCCR 2 cut(s) 76, 227
Eam1104I CTCTTC 2 cut(s) 1029, 1159
EarI CTCTTC 2 cut(s) 1029, 1159
Ecl136II GAGCTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 341
Eco24I GRGCYC 2 cut(s) 148, 1073
Eco32I GATATC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 29
Eco53kI GAGCTC 1 cut(s) 146
Eco57I CTGAAG 2 cut(s) 744, 764
Eco81I CCTNAGG 1 cut(s) 701
EcoICRI GAGCTC 1 cut(s) 146
EcoO109I RGGNCCY 3 cut(s) 29, 795, 1070
EcoRII CCWGG 4 cut(s) 78, 438, 861, 1150
EcoRV GATATC 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 341
EcoT22I ATGCAT 1 cut(s) 182
EcoT38I GRGCYC 2 cut(s) 148, 1073
ErhI CCWWGG 1 cut(s) 341
Esp3I CGTCTC 1 cut(s) 1002
FaeI CATG 4 cut(s) 106, 180, 203, 263
FaqI GGGAC 1 cut(s) 578
FatI CATG 4 cut(s) 102, 176, 199, 259
FblI GTMKAC 1 cut(s) 91
Fnu4HI GCNGC 4 cut(s) 118, 227, 596, 886
FokI GGATG 6 cut(s) 22, 137, 314, 371, 674, 1093
FriOI GRGCYC 2 cut(s) 148, 1073
Fsp4HI GCNGC 4 cut(s) 118, 227, 596, 886
FspAI RTGCGCAY 2 cut(s) 198, 837
FspBI CTAG 2 cut(s) 342, 623
FspI TGCGCA 2 cut(s) 198, 837
GlaI GCGC 3 cut(s) 64, 198, 837
GluI GCNGC 4 cut(s) 118, 227, 596, 886
GsuI CTGGAG 1 cut(s) 461
HaeIII GGCC 4 cut(s) 78, 229, 797, 1071
HapII CCGG 1 cut(s) 523
HhaI GCGC 3 cut(s) 65, 199, 838
Hin1I GRCGYC 1 cut(s) 858
Hin1II CATG 4 cut(s) 106, 180, 203, 263
Hin6I GCGC 3 cut(s) 63, 197, 836
HinP1I GCGC 3 cut(s) 63, 197, 836
HinfI GANTC 5 cut(s) 83, 111, 239, 443, 493
HpaII CCGG 1 cut(s) 523
HphI GGTGA 2 cut(s) 29, 234
Hpy166II GTNNAC 4 cut(s) 92, 778, 805, 1041
Hpy188I TCNGA 3 cut(s) 174, 661, 956
Hpy188III TCNNGA 9 cut(s) 108, 281, 462, 497, 700, 722, 815, 989, 1031
Hpy8I GTNNAC 4 cut(s) 92, 778, 805, 1041
Hpy99I CGWCG 1 cut(s) 644
HpyAV CCTTC 5 cut(s) 14, 164, 623, 740, 922
HpyCH4III ACNGT 3 cut(s) 320, 541, 788
HpyCH4IV ACGT 1 cut(s) 858
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 1068
HpyF3I CTNAG 4 cut(s) 42, 701, 799, 1090
HpySE526I ACGT 1 cut(s) 858
Hsp92I GRCGYC 1 cut(s) 858
Hsp92II CATG 4 cut(s) 106, 180, 203, 263
HspAI GCGC 3 cut(s) 63, 197, 836
Kzo9I GATC 4 cut(s) 210, 672, 946, 1012
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 2 cut(s) 104, 897
LweI GCATC 4 cut(s) 189, 336, 346, 859
MaeI CTAG 2 cut(s) 342, 623
MaeII ACGT 1 cut(s) 858
MaeIII GTNAC 1 cut(s) 823
MalI GATC 4 cut(s) 212, 674, 948, 1014
MboI GATC 4 cut(s) 210, 672, 946, 1012
MboII GAAGA 7 cut(s) 58, 220, 558, 728, 757, 1046, 1176
MfeI CAATTG 1 cut(s) 602
MflI RGATCY 2 cut(s) 210, 672
MhlI GDGCHC 2 cut(s) 148, 1073
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 7 cut(s) 407, 428, 448, 465, 602, 1139, 1156
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 2 cut(s) 120, 452
MmeI TCCRAC 6 cut(s) 197, 507, 523, 639, 770, 1098
Mox20I TGGCCA 1 cut(s) 78
Mph1103I ATGCAT 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 729
MscI TGGCCA 1 cut(s) 78
MseI TTAA 3 cut(s) 98, 921, 960
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 78
MspA1I CMGCKG 3 cut(s) 117, 595, 1094
MspI CCGG 1 cut(s) 523
MspR9I CCNGG 5 cut(s) 80, 440, 523, 863, 1152
MunI CAATTG 1 cut(s) 602
Mva1269I GAATGC 2 cut(s) 120, 1129
MvaI CCWGG 4 cut(s) 80, 440, 863, 1152
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 186, 1068
NciI CCSGG 1 cut(s) 523
NdeII GATC 4 cut(s) 210, 672, 946, 1012
NlaIII CATG 4 cut(s) 106, 180, 203, 263
NlaIV GGNNCC 1 cut(s) 1071
NmuCI GTSAC 1 cut(s) 823
NsbI TGCGCA 2 cut(s) 198, 837
NsiI ATGCAT 1 cut(s) 182
NspI RCATGY 2 cut(s) 106, 180
PctI GAATGC 2 cut(s) 120, 1129
PdmI GAANNNNTTC 1 cut(s) 729
PfeI GAWTC 3 cut(s) 83, 239, 493
PfoI TCCNGGA 1 cut(s) 438
PkrI GCNGC 4 cut(s) 119, 228, 597, 887
PleI GAGTC 2 cut(s) 119, 451
PpsI GAGTC 2 cut(s) 119, 451
PpuMI RGGWCCY 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 29
Psp6I CCWGG 4 cut(s) 78, 438, 861, 1150
PspGI CCWGG 4 cut(s) 78, 438, 861, 1150
PspN4I GGNNCC 1 cut(s) 1071
PspOMI GGGCCC 1 cut(s) 1069
PspPI GGNCC 4 cut(s) 29, 795, 1069, 1070
PspPPI RGGWCCY 1 cut(s) 29
PsuI RGATCY 2 cut(s) 210, 672
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 3 cut(s) 338, 804, 1040
RsaNI GTAC 3 cut(s) 337, 803, 1039
RseI CAYNNNNRTG 1 cut(s) 285
SacI GAGCTC 1 cut(s) 148
SaqAI TTAA 3 cut(s) 98, 921, 960
SatI GCNGC 4 cut(s) 118, 227, 596, 886
Sau3AI GATC 4 cut(s) 210, 672, 946, 1012
Sau96I GGNCC 4 cut(s) 29, 795, 1069, 1070
SchI GAGTC 2 cut(s) 120, 452
ScrFI CCNGG 5 cut(s) 80, 440, 523, 863, 1152
SduI GDGCHC 2 cut(s) 148, 1073
SfaNI GCATC 4 cut(s) 189, 336, 346, 859
SinI GGWCC 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 7 cut(s) 407, 428, 448, 465, 602, 1139, 1156
SsiI CCGC 4 cut(s) 115, 226, 331, 595
SspMI CTAG 2 cut(s) 342, 623
SstI GAGCTC 1 cut(s) 148
StyD4I CCNGG 5 cut(s) 78, 438, 521, 861, 1150
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 3 cut(s) 320, 541, 788
TaiI ACGT 1 cut(s) 861
TaqI TCGA 2 cut(s) 507, 814
TasI AATT 7 cut(s) 407, 428, 448, 465, 602, 1139, 1156
TatI WGTACW 2 cut(s) 802, 1038
TauI GCSGC 2 cut(s) 229, 598
TfiI GAWTC 3 cut(s) 83, 239, 493
Tru1I TTAA 3 cut(s) 98, 921, 960
Tru9I TTAA 3 cut(s) 98, 921, 960
TscAI CASTG 1 cut(s) 913
TseFI GTSAC 1 cut(s) 823
TseI GCWGC 2 cut(s) 117, 885
Tsp45I GTSAC 1 cut(s) 823
TspDTI ATGAA 4 cut(s) 722, 904, 941, 1088
TspGWI ACGGA 2 cut(s) 116, 1020
TspRI CASTG 1 cut(s) 913
VpaK11BI GGWCC 1 cut(s) 29
XapI RAATTY 4 cut(s) 428, 448, 465, 1139
XceI RCATGY 2 cut(s) 106, 180
XmaJI CCTAGG 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 729
XspI CTAG 2 cut(s) 342, 623
ZraI GACGTC 1 cut(s) 859
Zsp2I ATGCAT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.