AT1G70420

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012761
Physical Location & Seq
Reverse (-)
26539542 .. 26540818
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70420.1

Sequence Viewer

Length: 819 bp
ATGCAAGTTATTTCTCCTTCGTCTCCGGCGCCGAGATTCGCCGGAAAAGAGAGATTTTCAGAAGTTTACGGCGAACTAAACGACGATTTTGGCTCTAAACTGAAGATTAGTTCTAAAGAGGAAGAAAACAGAGATGATGATTCATGGTGGAATCAGAACGGAACTGATAAAGATGATGAAGGAAGAGAAGAAGATTTCTCATTCGCAAGTGTAAACGCAGATAATTCACCGATAACCGCAGATGAAGCATTCGAAGACGGTCAGATCCGACCGGTTTATCCTCTGTTTAACCGGAATATTTTCTTCGATGATCCAGAGGAAAAAACTTTACGTTCACCTCTCAAGAAACTCTTCGTTGAATCCACAACCACAGAAGAAGAAGAAGAAGAGTCAGATACGGTGGGTCCATATTGTTCATGGACAAATCGTACGGTGGAGCAAGCATCACCAGAGACTTGTCGGAAAAGTAACTCAACAGGGTTCTCAAAGCTATGGAGATTTAGAGATCTTGTTTTGAGAAGTAACAGTGATGGAAAAGATGCGTTTGTGTTTTTAAGCAACGGCTCTTCATCTACATCGTCGACGTCGTCTACGGCGGCGAGATTGAGTGGTGTGGTGAAGTCGTCGGAGAAAGGGAAAGAGAAAACGAAGACGGATAAGAAGAAGGATAAGATGAGAACGAAATCGGCACATGAGAAATTGTATATGAGAAACAGAGCAATGAGAGAAGAAGGGAAACGAAGATCGTATCTTCCGTATAAACATGTTGGGTTCTTCACTAATGTTAATGGTTTAACCAGAAATGTTCATCCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

272

Amino Acids

31.02

Weight (kDa)

5.85

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 80 - 252 5.7e-34 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012761)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23710 AT1G70420
fragaria_vesca FvH4_4g34370
malus_domestica MD13G1092700.v1.1 MD16G1093500.v1.1
prunus_persica Prupe.1G253100_v2.0.a1
pyrus_communis pycom13g08060 pycom16g07950
rosa_chinensis RchiOBHm_Chr4g0443781
rosa_laevigata RLG00000005889
rosa_multiflora Rmu_sc0005632.1_g000001 Rmu_sc0036070.1_g000002
rosa_roxburghii Rroxscaffold_5G00384360
rosa_rugosa Rorug04G0347200
rosa_samantha Rh4BG418400 Rh4CG432600 Rh4DG413700
rosa_wichuraiana Rw4G035000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 587
AccB1I GGYRCC 1 cut(s) 28
AccI GTMKAC 2 cut(s) 581, 590
AciI CCGC 2 cut(s) 237, 596
AclWI GGATC 2 cut(s) 259, 305
AcuI CTGAAG 1 cut(s) 122
AcyI GRCGYC 2 cut(s) 29, 584
AfaI GTAC 1 cut(s) 430
AflIII ACRYGT 1 cut(s) 763
AgeI ACCGGT 1 cut(s) 271
AgsI TTSAA 1 cut(s) 359
AluBI AGCT 1 cut(s) 490
AluI AGCT 1 cut(s) 490
Alw26I GTCTC 2 cut(s) 27, 446
AlwI GGATC 2 cut(s) 259, 305
AsiGI ACCGGT 1 cut(s) 271
Asp700I GAANNNNTTC 2 cut(s) 299, 350
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 404
AsuHPI GGTGA 4 cut(s) 219, 327, 438, 628
AsuII TTCGAA 1 cut(s) 252
AvaII GGWCC 1 cut(s) 404
BanI GGYRCC 1 cut(s) 28
BbsI GAAGAC 2 cut(s) 261, 656
BccI CCATC 1 cut(s) 524
BceAI ACGGC 3 cut(s) 85, 577, 609
BcoDI GTCTC 2 cut(s) 27, 446
BfoI RGCGCY 1 cut(s) 32
BglII AGATCT 1 cut(s) 505
BisI GCNGC 1 cut(s) 597
BlsI GCNGC 1 cut(s) 598
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 2 cut(s) 30, 405
BmsI GCATC 2 cut(s) 452, 529
BpiI GAAGAC 2 cut(s) 261, 656
Bpu14I TTCGAA 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 326
BsaHI GRCGYC 2 cut(s) 29, 584
BsaWI WCCGGW 2 cut(s) 271, 291
Bse118I RCCGGY 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 726
BseGI GGATG 1 cut(s) 808
BseMI GCAATG 1 cut(s) 726
Bsh1285I CGRYCG 1 cut(s) 272
BshNI GGYRCC 1 cut(s) 28
BshTI ACCGGT 1 cut(s) 271
BsiEI CGRYCG 1 cut(s) 272
BsiSI CCGG 4 cut(s) 26, 42, 272, 292
BsiWI CGTACG 1 cut(s) 428
BsmAI GTCTC 2 cut(s) 27, 446
BsmBI CGTCTC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 252
Bsp143I GATC 4 cut(s) 264, 310, 505, 743
BspACI CCGC 2 cut(s) 237, 596
BspLI GGNNCC 2 cut(s) 30, 405
BspPI GGATC 2 cut(s) 259, 305
BspQI GCTCTTC 1 cut(s) 571
BspT104I TTCGAA 1 cut(s) 252
BspT107I GGYRCC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 726
BsrFI RCCGGY 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 271
BssMI GATC 4 cut(s) 264, 310, 505, 743
BssNI GRCGYC 2 cut(s) 29, 584
Bst4CI ACNGT 4 cut(s) 260, 400, 433, 527
Bst6I CTCTTC 4 cut(s) 178, 356, 381, 571
BstACI GRCGYC 2 cut(s) 29, 584
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 441
BstF5I GGATG 1 cut(s) 808
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 4 cut(s) 267, 313, 508, 746
BstMAI GTCTC 2 cut(s) 27, 446
BstMBI GATC 4 cut(s) 264, 310, 505, 743
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 767
BstV2I GAAGAC 2 cut(s) 261, 656
BstX2I RGATCY 2 cut(s) 264, 505
BstYI RGATCY 2 cut(s) 264, 505
BtsCI GGATG 1 cut(s) 808
BtsIMutI CAGTG 1 cut(s) 532
Cac8I GCNNGC 1 cut(s) 441
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 429
CspAI ACCGGT 1 cut(s) 271
CviAII CATG 4 cut(s) 144, 417, 692, 764
CviJI RGCY 3 cut(s) 93, 490, 564
CviKI_1 RGCY 3 cut(s) 93, 490, 564
CviQI GTAC 1 cut(s) 429
DinI GGCGCC 1 cut(s) 30
DpnI GATC 4 cut(s) 266, 312, 507, 745
DpnII GATC 4 cut(s) 264, 310, 505, 743
Eam1104I CTCTTC 4 cut(s) 178, 356, 381, 571
EarI CTCTTC 4 cut(s) 178, 356, 381, 571
Eco47I GGWCC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 122
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 4 cut(s) 147, 420, 695, 767
FaiI YATR 9 cut(s) 145, 409, 418, 493, 693, 705, 707, 759, 765
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FatI CATG 4 cut(s) 143, 416, 691, 763
FblI GTMKAC 2 cut(s) 581, 590
Fnu4HI GCNGC 1 cut(s) 597
FokI GGATG 1 cut(s) 795
Fsp4HI GCNGC 1 cut(s) 597
GlaI GCGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 597
HaeII RGCGCY 1 cut(s) 32
HapII CCGG 4 cut(s) 26, 42, 272, 292
HhaI GCGC 1 cut(s) 31
Hin1I GRCGYC 2 cut(s) 29, 584
Hin1II CATG 4 cut(s) 147, 420, 695, 767
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 582
HindII GTYRAC 1 cut(s) 582
HinfI GANTC 5 cut(s) 36, 140, 151, 359, 389
HpaII CCGG 4 cut(s) 26, 42, 272, 292
HphI GGTGA 4 cut(s) 219, 327, 438, 628
Hpy166II GTNNAC 5 cut(s) 67, 214, 335, 582, 591
Hpy188I TCNGA 7 cut(s) 61, 156, 264, 269, 394, 462, 628
Hpy188III TCNNGA 2 cut(s) 314, 343
Hpy8I GTNNAC 5 cut(s) 67, 214, 335, 582, 591
Hpy99I CGWCG 5 cut(s) 86, 583, 586, 589, 628
HpyAV CCTTC 4 cut(s) 27, 173, 658, 725
HpyCH4III ACNGT 4 cut(s) 260, 400, 433, 527
HpyCH4IV ACGT 2 cut(s) 331, 584
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpySE526I ACGT 2 cut(s) 331, 584
Hsp92I GRCGYC 2 cut(s) 29, 584
Hsp92II CATG 4 cut(s) 147, 420, 695, 767
HspAI GCGC 1 cut(s) 29
KasI GGCGCC 1 cut(s) 28
Kzo9I GATC 4 cut(s) 264, 310, 505, 743
LguI GCTCTTC 1 cut(s) 571
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 8 cut(s) 39, 55, 285, 305, 327, 462, 462, 811
LweI GCATC 2 cut(s) 452, 529
MaeII ACGT 2 cut(s) 331, 584
MaeIII GTNAC 2 cut(s) 467, 521
MalI GATC 4 cut(s) 266, 312, 507, 745
MboI GATC 4 cut(s) 264, 310, 505, 743
MflI RGATCY 2 cut(s) 264, 505
MluCI AATT 2 cut(s) 223, 698
Mly113I GGCGCC 1 cut(s) 29
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 3 cut(s) 292, 440, 606
MnlI CCTC 4 cut(s) 112, 291, 310, 348
MroXI GAANNNNTTC 2 cut(s) 299, 350
MseI TTAA 4 cut(s) 288, 554, 786, 794
MspI CCGG 4 cut(s) 26, 42, 272, 292
Mva1269I GAATGC 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 245
NarI GGCGCC 1 cut(s) 29
NdeII GATC 4 cut(s) 264, 310, 505, 743
NlaIII CATG 4 cut(s) 147, 420, 695, 767
NlaIV GGNNCC 2 cut(s) 30, 405
NmeAIII GCCGAG 1 cut(s) 57
NspI RCATGY 1 cut(s) 767
NspV TTCGAA 1 cut(s) 252
PciI ACATGT 1 cut(s) 763
PciSI GCTCTTC 1 cut(s) 571
PcsI WCGNNNNNNNCGW 2 cut(s) 584, 752
PctI GAATGC 1 cut(s) 248
PdmI GAANNNNTTC 2 cut(s) 299, 350
PfeI GAWTC 4 cut(s) 36, 140, 151, 359
Pfl23II CGTACG 1 cut(s) 428
PflFI GACNNNGTC 1 cut(s) 586
PinAI ACCGGT 1 cut(s) 271
PkrI GCNGC 1 cut(s) 598
PleI GAGTC 1 cut(s) 397
PluTI GGCGCC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 397
PscI ACATGT 1 cut(s) 763
PspLI CGTACG 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 30, 405
PspPI GGNCC 1 cut(s) 404
PsuI RGATCY 2 cut(s) 264, 505
PsyI GACNNNGTC 1 cut(s) 586
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
SalI GTCGAC 1 cut(s) 580
SapI GCTCTTC 1 cut(s) 571
SaqAI TTAA 4 cut(s) 288, 554, 786, 794
SatI GCNGC 1 cut(s) 597
Sau3AI GATC 4 cut(s) 264, 310, 505, 743
Sau96I GGNCC 1 cut(s) 404
SchI GAGTC 1 cut(s) 398
SetI ASST 4 cut(s) 334, 340, 492, 587
SfaNI GCATC 2 cut(s) 452, 529
SfoI GGCGCC 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 252
SgrDI CGTCGACG 1 cut(s) 580
SinI GGWCC 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 2 cut(s) 223, 698
SsiI CCGC 2 cut(s) 237, 596
SspDI GGCGCC 1 cut(s) 28
SspI AATATT 1 cut(s) 298
TaaI ACNGT 4 cut(s) 260, 400, 433, 527
TaiI ACGT 2 cut(s) 334, 587
TaqI TCGA 3 cut(s) 252, 306, 581
TasI AATT 2 cut(s) 223, 698
TauI GCSGC 1 cut(s) 599
TfiI GAWTC 4 cut(s) 36, 140, 151, 359
Tru1I TTAA 4 cut(s) 288, 554, 786, 794
Tru9I TTAA 4 cut(s) 288, 554, 786, 794
TscAI CASTG 1 cut(s) 532
TspDTI ATGAA 6 cut(s) 132, 192, 258, 405, 558, 797
TspGWI ACGGA 3 cut(s) 174, 668, 744
TspRI CASTG 1 cut(s) 532
Tth111I GACNNNGTC 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 404
XceI RCATGY 1 cut(s) 767
XcmI CCANNNNNNNNNTGG 1 cut(s) 414
XmiI GTMKAC 2 cut(s) 581, 590
XmnI GAANNNNTTC 2 cut(s) 299, 350
ZraI GACGTC 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.