Rmu_sc0005632.1_g000001

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005632.1
OG0012761
Physical Location & Seq
Forward (+)
1610 .. 2548
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005632.1_g000001.1.cds

Sequence Viewer

Length: 939 bp
atgcaagcgatttcggttccggcttcgtctccgagtttggattcttacgtcaattcaaagaacaatttcgaatattcgcagctctctgcgaatttcaccgctagtgtcaaagtctcagaggacgtaaaacgcacagcttcaggtgaggaagagaaaccagagagggaaacgcaaaatgacgtcgctgctgtagatgaggacgagatagaagtagaagaagaggaagaggaagaggagttctcgtttttctgtacgaatcccgacggatcaccgatttccgccgacgacgcgttccaggacggccagatccggccggtgtatccaattttcaaccgggatctcctcttcgccgacgcctacgacggcgattcttctttccgccagaaagaggcttcctcttcttcgtctctaaggccgccattgaaaaagctcttcttcgaagaccgcgacgctccatcgtcgtcggcctccgaatccgacgagctcgaagccgtcccggagggaagctactgcgagtggtccaagaacgccaaggaagtctcgccggagctccgaaacaacaagagcaattctaccgggtcctccaagctctggagaatcagggacttggttcctcggagcaacagcgacggcaaggacgcgttcgtgttcctgaaccctaattcggcgacccctaagcaacataaaacggctgcggctgcggcggcggcggtggccgcgaaggccgccaagagcgtaaagccggtggagaaagctcaggggcaaaagggtaaaaagtccgaaacggtgtcgtcggcgcacgagaagcattacgtgatgaacagagcgaagaaggaaggggataaacgacggtcgtatttgccgtacaggccgggtgtggtcggtttcgggttcttcaccaatgtgaacgggttgagcagaaatgttcatcctttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

312

Amino Acids

34.36

Weight (kDa)

5.16

Isoelectric Point (pI)

55.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012761)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23710 AT1G70420
fragaria_vesca FvH4_4g34370
malus_domestica MD13G1092700.v1.1 MD16G1093500.v1.1
prunus_persica Prupe.1G253100_v2.0.a1
pyrus_communis pycom13g08060 pycom16g07950
rosa_chinensis RchiOBHm_Chr4g0443781
rosa_laevigata RLG00000005889
rosa_multiflora Rmu_sc0005632.1_g000001 Rmu_sc0036070.1_g000002
rosa_roxburghii Rroxscaffold_5G00384360
rosa_rugosa Rorug04G0347200
rosa_samantha Rh4BG418400 Rh4CG432600 Rh4DG413700
rosa_wichuraiana Rw4G035000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
AccB7I CCANNNNNTGG 1 cut(s) 591
AccII CGCG 4 cut(s) 290, 447, 641, 719
AclWI GGATC 3 cut(s) 274, 301, 345
AcoI YGGCCR 3 cut(s) 301, 311, 714
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 2 cut(s) 180, 354
AfaI GTAC 2 cut(s) 253, 866
AfiI CCNNNNNNNGG 3 cut(s) 388, 591, 664
AflIII ACRYGT 2 cut(s) 288, 639
AgsI TTSAA 3 cut(s) 57, 331, 424
AjnI CCWGG 1 cut(s) 294
AleI CACNNNNGTG 1 cut(s) 902
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 8 cut(s) 82, 137, 430, 484, 507, 550, 589, 755
AluI AGCT 8 cut(s) 82, 137, 430, 484, 507, 550, 589, 755
Alw21I GWGCWC 2 cut(s) 486, 552
Alw26I GTCTC 4 cut(s) 33, 118, 411, 544
AlwI GGATC 3 cut(s) 274, 301, 345
AoxI GGCC 7 cut(s) 301, 311, 413, 465, 714, 723, 869
ApeKI GCWGC 4 cut(s) 79, 185, 692, 698
ApoI RAATTY 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 799
AspS9I GGNCC 2 cut(s) 519, 579
AsuC2I CCSGG 4 cut(s) 335, 497, 577, 873
AsuHPI GGTGA 4 cut(s) 88, 155, 261, 889
AsuII TTCGAA 2 cut(s) 69, 438
AvaII GGWCC 2 cut(s) 519, 579
BanII GRGCYC 2 cut(s) 486, 552
BauI CACGAG 1 cut(s) 800
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 2 cut(s) 486, 552
BbvI GCAGC 4 cut(s) 91, 172, 679, 685
BccI CCATC 1 cut(s) 463
BceAI ACGGC 6 cut(s) 316, 379, 476, 646, 705, 847
BciT130I CCWGG 1 cut(s) 296
BciVI GTATCC 1 cut(s) 330
BcnI CCSGG 4 cut(s) 335, 497, 577, 873
BcoDI GTCTC 4 cut(s) 33, 118, 411, 544
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 189
BfuI GTATCC 1 cut(s) 330
BglI GCCNNNNNGGC 2 cut(s) 722, 868
Bme1390I CCNGG 5 cut(s) 296, 335, 497, 577, 873
Bme18I GGWCC 2 cut(s) 519, 579
BmgT120I GGNCC 2 cut(s) 519, 579
BmiI GGNNCC 3 cut(s) 18, 580, 612
BmrFI CCNGG 5 cut(s) 296, 335, 497, 577, 873
BpiI GAAGAC 1 cut(s) 447
BplI GAGNNNNNCTC 4 cut(s) 224, 256, 380, 412
BpmI CTGGAG 1 cut(s) 613
Bpu10I CCTNAGC 2 cut(s) 675, 756
Bpu14I TTCGAA 2 cut(s) 69, 438
BpuMI CCSGG 4 cut(s) 335, 497, 577, 873
BsaAI YACGTR 1 cut(s) 814
BsaHI GRCGYC 2 cut(s) 180, 354
BsaJI CCNNGG 2 cut(s) 531, 614
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 3 cut(s) 388, 591, 664
Bse118I RCCGGY 2 cut(s) 313, 742
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 531, 614
BseGI GGATG 1 cut(s) 928
BseLI CCNNNNNNNGG 3 cut(s) 388, 591, 664
BseMII CTCAG 2 cut(s) 129, 770
BseRI GAGGAG 2 cut(s) 248, 332
BseX3I CGGCCG 1 cut(s) 311
BseXI GCAGC 4 cut(s) 91, 172, 679, 685
Bsh1236I CGCG 4 cut(s) 290, 447, 641, 719
Bsh1285I CGRYCG 2 cut(s) 314, 854
BshFI GGCC 7 cut(s) 303, 313, 415, 467, 716, 725, 871
BsiEI CGRYCG 2 cut(s) 314, 854
BsiHKAI GWGCWC 2 cut(s) 486, 552
BsiSI CCGG 9 cut(s) 20, 310, 314, 334, 497, 545, 576, 743, 872
BslFI GGGAC 2 cut(s) 479, 617
BslI CCNNNNNNNGG 3 cut(s) 388, 591, 664
BsmAI GTCTC 4 cut(s) 33, 118, 411, 544
BsmBI CGTCTC 2 cut(s) 33, 411
BsmFI GGGAC 2 cut(s) 479, 617
BsnI GGCC 7 cut(s) 303, 313, 415, 467, 716, 725, 871
Bsp119I TTCGAA 2 cut(s) 69, 438
Bsp1286I GDGCHC 2 cut(s) 486, 552
Bsp143I GATC 3 cut(s) 266, 306, 337
BspANI GGCC 7 cut(s) 303, 313, 415, 467, 716, 725, 871
BspCNI CTCAG 2 cut(s) 128, 769
BspFNI CGCG 4 cut(s) 290, 447, 641, 719
BspLI GGNNCC 3 cut(s) 18, 580, 612
BspPI GGATC 3 cut(s) 274, 301, 345
BspQI GCTCTTC 1 cut(s) 437
BspT104I TTCGAA 2 cut(s) 69, 438
BsrFI RCCGGY 2 cut(s) 313, 742
BssAI RCCGGY 2 cut(s) 313, 742
BssECI CCNNGG 2 cut(s) 531, 614
BssMI GATC 3 cut(s) 266, 306, 337
BssNI GRCGYC 2 cut(s) 180, 354
BssSI CACGAG 1 cut(s) 800
BssT1I CCWWGG 1 cut(s) 531
Bst2BI CACGAG 1 cut(s) 800
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 787, 852
Bst6I CTCTTC 7 cut(s) 144, 213, 219, 225, 350, 403, 437
BstACI GRCGYC 2 cut(s) 180, 354
BstBAI YACGTR 1 cut(s) 814
BstBI TTCGAA 2 cut(s) 69, 438
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 115, 410, 675, 756
BstF5I GGATG 1 cut(s) 928
BstFNI CGCG 4 cut(s) 290, 447, 641, 719
BstHHI GCGC 1 cut(s) 799
BstKTI GATC 3 cut(s) 269, 309, 340
BstMAI GTCTC 4 cut(s) 33, 118, 411, 544
BstMBI GATC 3 cut(s) 266, 306, 337
BstMCI CGRYCG 2 cut(s) 314, 854
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 5 cut(s) 294, 333, 495, 575, 871
BstSFI CTRYAG 1 cut(s) 189
BstUI CGCG 4 cut(s) 290, 447, 641, 719
BstV1I GCAGC 4 cut(s) 91, 172, 679, 685
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 2 cut(s) 306, 337
BstYI RGATCY 2 cut(s) 306, 337
BstZI CGGCCG 1 cut(s) 311
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 7 cut(s) 303, 313, 415, 467, 716, 725, 871
BtsCI GGATG 1 cut(s) 928
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 799
Cfr10I RCCGGY 2 cut(s) 313, 742
Cfr13I GGNCC 2 cut(s) 519, 579
CseI GACGC 4 cut(s) 296, 362, 458, 647
Csp6I GTAC 2 cut(s) 252, 865
CviQI GTAC 2 cut(s) 252, 865
DdeI CTNAG 4 cut(s) 115, 410, 675, 756
DpnI GATC 3 cut(s) 268, 308, 339
DpnII GATC 3 cut(s) 266, 306, 337
EaeI YGGCCR 3 cut(s) 301, 311, 714
EagI CGGCCG 1 cut(s) 311
Eam1104I CTCTTC 7 cut(s) 144, 213, 219, 225, 350, 403, 437
EarI CTCTTC 7 cut(s) 144, 213, 219, 225, 350, 403, 437
EciI GGCGGA 2 cut(s) 268, 368
Ecl136II GAGCTC 2 cut(s) 484, 550
EclXI CGGCCG 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 531
Eco24I GRGCYC 2 cut(s) 486, 552
Eco47I GGWCC 2 cut(s) 519, 579
Eco52I CGGCCG 1 cut(s) 311
Eco53kI GAGCTC 2 cut(s) 484, 550
Eco57I CTGAAG 1 cut(s) 123
EcoICRI GAGCTC 2 cut(s) 484, 550
EcoO109I RGGNCCY 1 cut(s) 579
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 531
EcoT38I GRGCYC 2 cut(s) 486, 552
ErhI CCWWGG 1 cut(s) 531
Esp3I CGTCTC 2 cut(s) 33, 411
FaiI YATR 1 cut(s) 684
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 2 cut(s) 479, 617
FokI GGATG 1 cut(s) 915
FriOI GRGCYC 2 cut(s) 486, 552
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 798
GsuI CTGGAG 1 cut(s) 613
HaeIII GGCC 7 cut(s) 303, 313, 415, 467, 716, 725, 871
HapII CCGG 9 cut(s) 20, 310, 314, 334, 497, 545, 576, 743, 872
HgaI GACGC 4 cut(s) 296, 362, 458, 647
HhaI GCGC 1 cut(s) 799
Hin1I GRCGYC 2 cut(s) 180, 354
Hin6I GCGC 1 cut(s) 797
HinP1I GCGC 1 cut(s) 797
HinfI GANTC 5 cut(s) 41, 256, 368, 473, 597
HpaII CCGG 9 cut(s) 20, 310, 314, 334, 497, 545, 576, 743, 872
HphI GGTGA 4 cut(s) 88, 155, 261, 889
Hpy166II GTNNAC 1 cut(s) 907
Hpy188I TCNGA 8 cut(s) 33, 118, 472, 478, 554, 618, 781, 938
Hpy188III TCNNGA 3 cut(s) 260, 592, 652
Hpy8I GTNNAC 1 cut(s) 907
HpyAV CCTTC 3 cut(s) 715, 826, 830
HpyCH4III ACNGT 2 cut(s) 787, 852
HpyCH4IV ACGT 4 cut(s) 48, 123, 180, 813
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 4 cut(s) 115, 410, 675, 756
HpySE526I ACGT 4 cut(s) 48, 123, 180, 813
Hsp92I GRCGYC 2 cut(s) 180, 354
HspAI GCGC 1 cut(s) 797
Kzo9I GATC 3 cut(s) 266, 306, 337
LguI GCTCTTC 1 cut(s) 437
LmnI GCTCC 4 cut(s) 457, 547, 555, 618
Lsp1109I GCAGC 4 cut(s) 91, 172, 679, 685
MaeI CTAG 1 cut(s) 102
MaeII ACGT 4 cut(s) 48, 123, 180, 813
MalI GATC 3 cut(s) 268, 308, 339
MboI GATC 3 cut(s) 266, 306, 337
MflI RGATCY 2 cut(s) 306, 337
MhlI GDGCHC 2 cut(s) 486, 552
MluCI AATT 6 cut(s) 52, 64, 91, 324, 568, 661
MluI ACGCGT 2 cut(s) 288, 639
MmeI TCCRAC 1 cut(s) 501
MroXI GAANNNNTTC 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 902
MspI CCGG 9 cut(s) 20, 310, 314, 334, 497, 545, 576, 743, 872
MspR9I CCNGG 5 cut(s) 296, 335, 497, 577, 873
MvaI CCWGG 1 cut(s) 296
MvnI CGCG 4 cut(s) 290, 447, 641, 719
NciI CCSGG 4 cut(s) 335, 497, 577, 873
NdeII GATC 3 cut(s) 266, 306, 337
NlaIV GGNNCC 3 cut(s) 18, 580, 612
NspV TTCGAA 2 cut(s) 69, 438
OliI CACNNNNGTG 1 cut(s) 902
PciSI GCTCTTC 1 cut(s) 437
PcsI WCGNNNNNNNCGW 2 cut(s) 444, 860
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 5 cut(s) 41, 256, 368, 473, 597
PflMI CCANNNNNTGG 1 cut(s) 591
PfoI TCCNGGA 2 cut(s) 294, 495
Ppu21I YACGTR 1 cut(s) 814
PpuMI RGGWCCY 1 cut(s) 579
Psp124BI GAGCTC 2 cut(s) 486, 552
Psp5II RGGWCCY 1 cut(s) 579
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 3 cut(s) 18, 580, 612
PspPI GGNCC 2 cut(s) 519, 579
PspPPI RGGWCCY 1 cut(s) 579
PsuI RGATCY 2 cut(s) 306, 337
RsaI GTAC 2 cut(s) 253, 866
RsaNI GTAC 2 cut(s) 252, 865
RseI CAYNNNNRTG 1 cut(s) 902
SacI GAGCTC 2 cut(s) 486, 552
SapI GCTCTTC 1 cut(s) 437
Sau3AI GATC 3 cut(s) 266, 306, 337
Sau96I GGNCC 2 cut(s) 519, 579
ScrFI CCNGG 5 cut(s) 296, 335, 497, 577, 873
SduI GDGCHC 2 cut(s) 486, 552
SfcI CTRYAG 1 cut(s) 189
SfiI GGCCNNNNNGGCC 1 cut(s) 722
SfuI TTCGAA 2 cut(s) 69, 438
SinI GGWCC 2 cut(s) 519, 579
SmiMI CAYNNNNRTG 1 cut(s) 902
Sse9I AATT 6 cut(s) 52, 64, 91, 324, 568, 661
SspI AATATT 1 cut(s) 74
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 2 cut(s) 486, 552
StyD4I CCNGG 5 cut(s) 294, 333, 495, 575, 871
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 2 cut(s) 787, 852
TaiI ACGT 4 cut(s) 51, 126, 183, 816
TaqI TCGA 3 cut(s) 69, 438, 486
TasI AATT 6 cut(s) 52, 64, 91, 324, 568, 661
TauI GCSGC 7 cut(s) 418, 698, 704, 707, 710, 719, 728
TfiI GAWTC 5 cut(s) 41, 256, 368, 473, 597
TseI GCWGC 4 cut(s) 79, 185, 692, 698
TspDTI ATGAA 2 cut(s) 833, 917
TspGWI ACGGA 1 cut(s) 279
Van91I CCANNNNNTGG 1 cut(s) 591
VpaK11BI GGWCC 2 cut(s) 519, 579
XapI RAATTY 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 102
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.