FvH4_4g34370

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012761
Physical Location & Seq
Forward (+)
32198994 .. 32200571
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34370.t1

Sequence Viewer

Length: 882 bp
ATGCAAGCGGTTTCAGCTCCGGCTTCGTCTCCGAGTTTCGACGCTTACGAATTCAACAACATGAATATACAATACTCGCAGCTGTCTGCGAATTTCGCCGCAACCGTCAAGGTCTCGGAGGATGACGTTAAAGAGGAGATAACCGAAATTGAAGCTCAAAACGATGTTTGCGCGACGGTGCATGAGGAGGAGATAGAGGAAGAAGAAGAGGAGGAGTTTTCGTTCTTCTGCACGAATCCCGACGGATCGCCGATCTCCGCCGACGACGTGTTCCAGGACGGCCAGATCCGGCCGGTGTATCCCATCTTTAACCGAGATCTCCTCTTCGCCGACGCCTACGACGGCGACTCCTCCCGCCGCGACGACGCTTCTCCGTCTCTGCGGCCGCCGCTGAAGAAGTTCTTCTTCGAGGACCGCGACGCTCCTTCTTCTTCGGCCTCCGAATCCGACGAGCTCGAAGCCCTGCCGGAGGGAAGCTACTGCGAGTGGTCCAAGAACGCCAAGGAGGTCTCGCCGGAGCTCCGGAACAACAAGAGCAACTCCACCGGGTCCTCCAAGCTCTGGAGGATCAGAGACTTGGTTCCTCGGAGCAACAGCGACGGCAAGGACGCGTTCGTCTTCCTGAGCCCTAATTCGGCGGCGAAACTGAAGCAAAATAAAGACGCCGCCAAGGCGAAGGCGGTGGAGAAAGCTCAGGTGAAGGATAAGGGGCAAAAGGGTAAAAAGGCCGAAACGGTGTCGTCTGCGCACGAGAGGCATTATGTAATGAACAGAGCGAAGAAGGAAGGGGAAAAACGACGGTCGTATTTGCCGTACAGGCCGGGTGTGGTTGGATTCTTCACCAATGTGAACGTGTTGAGCAAAAATGTTCATCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

294

Amino Acids

32.76

Weight (kDa)

5.01

Isoelectric Point (pI)

63.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 87 - 271 1.1e-35 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012761)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23710 AT1G70420
fragaria_vesca FvH4_4g34370
malus_domestica MD13G1092700.v1.1 MD16G1093500.v1.1
prunus_persica Prupe.1G253100_v2.0.a1
pyrus_communis pycom13g08060 pycom16g07950
rosa_chinensis RchiOBHm_Chr4g0443781
rosa_laevigata RLG00000005889
rosa_multiflora Rmu_sc0005632.1_g000001 Rmu_sc0036070.1_g000002
rosa_roxburghii Rroxscaffold_5G00384360
rosa_rugosa Rorug04G0347200
rosa_samantha Rh4BG418400 Rh4CG432600 Rh4DG413700
rosa_wichuraiana Rw4G035000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 614
Acc16I TGCGCA 1 cut(s) 747
AccB7I CCANNNNNTGG 1 cut(s) 561
AccII CGCG 4 cut(s) 173, 360, 417, 611
AccIII TCCGGA 1 cut(s) 522
AclWI GGATC 3 cut(s) 253, 280, 575
AcoI YGGCCR 3 cut(s) 280, 290, 383
AcsI RAATTY 2 cut(s) 50, 91
AcuI CTGAAG 2 cut(s) 413, 668
AcyI GRCGYC 2 cut(s) 333, 663
AfaI GTAC 1 cut(s) 815
AfiI CCNNNNNNNGG 3 cut(s) 469, 561, 634
AflIII ACRYGT 3 cut(s) 267, 609, 852
AgsI TTSAA 2 cut(s) 55, 152
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 273
AleI CACNNNNGTG 1 cut(s) 845
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
AluBI AGCT 8 cut(s) 17, 82, 155, 454, 477, 520, 559, 692
AluI AGCT 8 cut(s) 17, 82, 155, 454, 477, 520, 559, 692
Alw21I GWGCWC 2 cut(s) 456, 522
Alw26I GTCTC 5 cut(s) 33, 118, 381, 514, 567
AlwI GGATC 3 cut(s) 253, 280, 575
Aor13HI TCCGGA 1 cut(s) 522
AoxI GGCC 6 cut(s) 280, 290, 383, 435, 726, 818
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 2 cut(s) 50, 91
Asp700I GAANNNNTTC 2 cut(s) 398, 401
AspLEI GCGC 2 cut(s) 173, 748
AspS9I GGNCC 3 cut(s) 412, 489, 549
AsuC2I CCSGG 2 cut(s) 547, 822
AsuHPI GGTGA 2 cut(s) 709, 832
AvaII GGWCC 3 cut(s) 412, 489, 549
BanII GRGCYC 3 cut(s) 456, 522, 629
BauI CACGAG 1 cut(s) 749
BbsI GAAGAC 1 cut(s) 610
Bbv12I GWGCWC 2 cut(s) 456, 522
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 311
BceAI ACGGC 4 cut(s) 295, 358, 616, 796
BciT130I CCWGG 1 cut(s) 275
BciVI GTATCC 1 cut(s) 309
BcnI CCSGG 2 cut(s) 547, 822
BcoDI GTCTC 5 cut(s) 33, 118, 381, 514, 567
BfuI GTATCC 1 cut(s) 309
BglI GCCNNNNNGGC 2 cut(s) 671, 817
BglII AGATCT 1 cut(s) 316
BisI GCNGC 8 cut(s) 80, 99, 358, 383, 386, 389, 639, 666
BlsI GCNGC 8 cut(s) 81, 100, 359, 384, 387, 390, 640, 667
Bme1390I CCNGG 3 cut(s) 275, 547, 822
Bme18I GGWCC 3 cut(s) 412, 489, 549
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 3 cut(s) 412, 489, 549
BmiI GGNNCC 2 cut(s) 550, 582
BmrFI CCNGG 3 cut(s) 275, 547, 822
BpiI GAAGAC 1 cut(s) 610
BplI GAGNNNNNCTC 2 cut(s) 306, 338
BpmI CTGGAG 1 cut(s) 583
Bpu10I CCTNAGC 2 cut(s) 623, 693
BpuMI CCSGG 2 cut(s) 547, 822
BsaHI GRCGYC 2 cut(s) 333, 663
BsaI GGTCTC 2 cut(s) 118, 514
BsaJI CCNNGG 3 cut(s) 501, 584, 669
BsaWI WCCGGW 1 cut(s) 522
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 332, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 469, 561, 634
Bse118I RCCGGY 1 cut(s) 292
BseAI TCCGGA 1 cut(s) 522
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 3 cut(s) 501, 584, 669
BseGI GGATG 2 cut(s) 127, 871
BseLI CCNNNNNNNGG 3 cut(s) 469, 561, 634
BseMII CTCAG 2 cut(s) 614, 707
BseRI GAGGAG 7 cut(s) 149, 200, 203, 224, 227, 311, 340
BseX3I CGGCCG 2 cut(s) 290, 383
BseXI GCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 214
Bsh1236I CGCG 4 cut(s) 173, 360, 417, 611
Bsh1285I CGRYCG 3 cut(s) 293, 386, 803
BshFI GGCC 6 cut(s) 282, 292, 385, 437, 728, 820
BsiEI CGRYCG 3 cut(s) 293, 386, 803
BsiHKAI GWGCWC 2 cut(s) 456, 522
BsiSI CCGG 8 cut(s) 20, 289, 293, 467, 515, 523, 546, 821
BslI CCNNNNNNNGG 3 cut(s) 469, 561, 634
BsmAI GTCTC 5 cut(s) 33, 118, 381, 514, 567
BsmBI CGTCTC 2 cut(s) 33, 381
BsnI GGCC 6 cut(s) 282, 292, 385, 437, 728, 820
Bso31I GGTCTC 2 cut(s) 118, 514
Bsp1286I GDGCHC 3 cut(s) 456, 522, 629
Bsp13I TCCGGA 1 cut(s) 522
Bsp143I GATC 5 cut(s) 245, 252, 285, 316, 567
BspANI GGCC 6 cut(s) 282, 292, 385, 437, 728, 820
BspCNI CTCAG 2 cut(s) 615, 706
BspEI TCCGGA 1 cut(s) 522
BspFNI CGCG 4 cut(s) 173, 360, 417, 611
BspLI GGNNCC 2 cut(s) 550, 582
BspPI GGATC 3 cut(s) 253, 280, 575
BspTNI GGTCTC 2 cut(s) 118, 514
BsrFI RCCGGY 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 3 cut(s) 501, 584, 669
BssMI GATC 5 cut(s) 245, 252, 285, 316, 567
BssNI GRCGYC 2 cut(s) 333, 663
BssSI CACGAG 1 cut(s) 749
BssT1I CCWWGG 2 cut(s) 501, 669
Bst2BI CACGAG 1 cut(s) 749
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 4 cut(s) 106, 178, 736, 801
Bst6I CTCTTC 2 cut(s) 201, 329
BstACI GRCGYC 2 cut(s) 333, 663
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 623, 693
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 2 cut(s) 127, 871
BstFNI CGCG 4 cut(s) 173, 360, 417, 611
BstHHI GCGC 2 cut(s) 173, 748
BstKTI GATC 5 cut(s) 248, 255, 288, 319, 570
BstMAI GTCTC 5 cut(s) 33, 118, 381, 514, 567
BstMBI GATC 5 cut(s) 245, 252, 285, 316, 567
BstMCI CGRYCG 3 cut(s) 293, 386, 803
BstMWI GCNNNNNNNGC 6 cut(s) 14, 95, 388, 671, 754, 817
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 3 cut(s) 273, 545, 820
BstUI CGCG 4 cut(s) 173, 360, 417, 611
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 610
BstX2I RGATCY 2 cut(s) 285, 316
BstYI RGATCY 2 cut(s) 285, 316
BstZI CGGCCG 2 cut(s) 290, 383
BsuI GTATCC 1 cut(s) 309
BsuRI GGCC 6 cut(s) 282, 292, 385, 437, 728, 820
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 2 cut(s) 127, 871
Cac8I GCNNGC 1 cut(s) 6
CciNI GCGGCCGC 1 cut(s) 383
CfoI GCGC 2 cut(s) 173, 748
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 3 cut(s) 412, 489, 549
CseI GACGC 6 cut(s) 50, 341, 374, 428, 617, 671
Csp6I GTAC 1 cut(s) 814
CviAII CATG 2 cut(s) 61, 182
CviQI GTAC 1 cut(s) 814
DdeI CTNAG 2 cut(s) 623, 693
DpnI GATC 5 cut(s) 247, 254, 287, 318, 569
DpnII GATC 5 cut(s) 245, 252, 285, 316, 567
DrdI GACNNNNNNGTC 1 cut(s) 614
DseDI GACNNNNNNGTC 1 cut(s) 614
EaeI YGGCCR 3 cut(s) 280, 290, 383
EagI CGGCCG 2 cut(s) 290, 383
Eam1104I CTCTTC 2 cut(s) 201, 329
EarI CTCTTC 2 cut(s) 201, 329
EciI GGCGGA 1 cut(s) 247
Ecl136II GAGCTC 2 cut(s) 454, 520
EclXI CGGCCG 2 cut(s) 290, 383
Eco130I CCWWGG 2 cut(s) 501, 669
Eco24I GRGCYC 3 cut(s) 456, 522, 629
Eco31I GGTCTC 2 cut(s) 118, 514
Eco47I GGWCC 3 cut(s) 412, 489, 549
Eco52I CGGCCG 2 cut(s) 290, 383
Eco53kI GAGCTC 2 cut(s) 454, 520
Eco57I CTGAAG 2 cut(s) 413, 668
EcoICRI GAGCTC 2 cut(s) 454, 520
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 549
EcoRI GAATTC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 2 cut(s) 501, 669
EcoT38I GRGCYC 3 cut(s) 456, 522, 629
ErhI CCWWGG 2 cut(s) 501, 669
Esp3I CGTCTC 2 cut(s) 33, 381
FaeI CATG 2 cut(s) 64, 185
FaiI YATR 4 cut(s) 62, 68, 183, 762
FalI AAGNNNNNCTT 4 cut(s) 386, 418, 389, 421
FatI CATG 2 cut(s) 60, 181
FauI CCCGC 1 cut(s) 362
Fnu4HI GCNGC 8 cut(s) 80, 99, 358, 383, 386, 389, 639, 666
FokI GGATG 2 cut(s) 134, 858
FriOI GRGCYC 3 cut(s) 456, 522, 629
Fsp4HI GCNGC 8 cut(s) 80, 99, 358, 383, 386, 389, 639, 666
FspI TGCGCA 1 cut(s) 747
GlaI GCGC 2 cut(s) 172, 747
GluI GCNGC 8 cut(s) 80, 99, 358, 383, 386, 389, 639, 666
GsuI CTGGAG 1 cut(s) 583
HaeIII GGCC 6 cut(s) 282, 292, 385, 437, 728, 820
HapII CCGG 8 cut(s) 20, 289, 293, 467, 515, 523, 546, 821
HgaI GACGC 6 cut(s) 50, 341, 374, 428, 617, 671
HhaI GCGC 2 cut(s) 173, 748
Hin1I GRCGYC 2 cut(s) 333, 663
Hin1II CATG 2 cut(s) 64, 185
Hin6I GCGC 2 cut(s) 171, 746
HinP1I GCGC 2 cut(s) 171, 746
HinfI GANTC 4 cut(s) 235, 347, 443, 834
HpaII CCGG 8 cut(s) 20, 289, 293, 467, 515, 523, 546, 821
HphI GGTGA 2 cut(s) 709, 832
Hpy166II GTNNAC 1 cut(s) 850
Hpy188I TCNGA 7 cut(s) 33, 118, 442, 448, 572, 588, 881
Hpy188III TCNNGA 4 cut(s) 239, 523, 562, 622
Hpy8I GTNNAC 1 cut(s) 850
HpyAV CCTTC 5 cut(s) 435, 670, 694, 775, 779
HpyCH4III ACNGT 4 cut(s) 106, 178, 736, 801
HpyCH4IV ACGT 3 cut(s) 126, 267, 852
HpyCH4V TGCA 3 cut(s) 4, 181, 231
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 95, 388, 671, 754, 817
HpyF3I CTNAG 2 cut(s) 623, 693
HpySE526I ACGT 3 cut(s) 126, 267, 852
Hsp92I GRCGYC 2 cut(s) 333, 663
Hsp92II CATG 2 cut(s) 64, 185
HspAI GCGC 2 cut(s) 171, 746
Kpn2I TCCGGA 1 cut(s) 522
Kzo9I GATC 5 cut(s) 245, 252, 285, 316, 567
LmnI GCTCC 5 cut(s) 22, 427, 517, 525, 588
Lsp1109I GCAGC 1 cut(s) 91
MaeII ACGT 3 cut(s) 126, 267, 852
MalI GATC 5 cut(s) 247, 254, 287, 318, 569
MboI GATC 5 cut(s) 245, 252, 285, 316, 567
MflI RGATCY 2 cut(s) 285, 316
MhlI GDGCHC 3 cut(s) 456, 522, 629
MluCI AATT 4 cut(s) 50, 91, 147, 631
MluI ACGCGT 1 cut(s) 609
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 2 cut(s) 471, 811
MroI TCCGGA 1 cut(s) 522
MroXI GAANNNNTTC 2 cut(s) 398, 401
MseI TTAA 2 cut(s) 129, 309
MslI CAYNNNNRTG 1 cut(s) 845
MspA1I CMGCKG 2 cut(s) 82, 391
MspI CCGG 8 cut(s) 20, 289, 293, 467, 515, 523, 546, 821
MspR9I CCNGG 3 cut(s) 275, 547, 822
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 4 cut(s) 173, 360, 417, 611
MwoI GCNNNNNNNGC 6 cut(s) 14, 95, 388, 671, 754, 817
NciI CCSGG 2 cut(s) 547, 822
NdeII GATC 5 cut(s) 245, 252, 285, 316, 567
NlaIII CATG 2 cut(s) 64, 185
NlaIV GGNNCC 2 cut(s) 550, 582
NotI GCGGCCGC 1 cut(s) 383
NsbI TGCGCA 1 cut(s) 747
OliI CACNNNNGTG 1 cut(s) 845
PcsI WCGNNNNNNNCGW 4 cut(s) 45, 102, 414, 809
PdmI GAANNNNTTC 2 cut(s) 398, 401
PfeI GAWTC 3 cut(s) 235, 443, 834
PflMI CCANNNNNTGG 1 cut(s) 561
PfoI TCCNGGA 1 cut(s) 273
PkrI GCNGC 8 cut(s) 81, 100, 359, 384, 387, 390, 640, 667
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
PpuMI RGGWCCY 1 cut(s) 549
Psp124BI GAGCTC 2 cut(s) 456, 522
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 550, 582
PspPI GGNCC 3 cut(s) 412, 489, 549
PspPPI RGGWCCY 1 cut(s) 549
PsuI RGATCY 2 cut(s) 285, 316
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 1 cut(s) 815
RsaNI GTAC 1 cut(s) 814
RseI CAYNNNNRTG 1 cut(s) 845
SacI GAGCTC 2 cut(s) 456, 522
SaqAI TTAA 2 cut(s) 129, 309
SatI GCNGC 8 cut(s) 80, 99, 358, 383, 386, 389, 639, 666
Sau3AI GATC 5 cut(s) 245, 252, 285, 316, 567
Sau96I GGNCC 3 cut(s) 412, 489, 549
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 3 cut(s) 275, 547, 822
SduI GDGCHC 3 cut(s) 456, 522, 629
SinI GGWCC 3 cut(s) 412, 489, 549
SmiMI CAYNNNNRTG 1 cut(s) 845
Sse9I AATT 4 cut(s) 50, 91, 147, 631
SstI GAGCTC 2 cut(s) 456, 522
StyD4I CCNGG 3 cut(s) 273, 545, 820
StyI CCWWGG 2 cut(s) 501, 669
TaaI ACNGT 4 cut(s) 106, 178, 736, 801
TaiI ACGT 3 cut(s) 129, 270, 855
TaqI TCGA 3 cut(s) 39, 408, 456
TasI AATT 4 cut(s) 50, 91, 147, 631
TauI GCSGC 7 cut(s) 101, 360, 385, 388, 391, 641, 668
TfiI GAWTC 3 cut(s) 235, 443, 834
Tru1I TTAA 2 cut(s) 129, 309
Tru9I TTAA 2 cut(s) 129, 309
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 3 cut(s) 77, 782, 860
TspGWI ACGGA 2 cut(s) 258, 363
Van91I CCANNNNNTGG 1 cut(s) 561
VpaK11BI GGWCC 3 cut(s) 412, 489, 549
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 2 cut(s) 50, 91
XmnI GAANNNNTTC 2 cut(s) 398, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.