Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009770

Physical Location & Seq

Genomic Coordinates Reverse (-)

8509736 .. 8510056

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAAAAAACACCCGAATCTTCTTCTTGGTTTCAGCGTCTACCTTTCAGCTGGGACTAAGCTAACCATCCCTCCCGAGGCTGAGCAACATACTGCGCCATCTGATAATAACAAACGAAAACGTGCTAAGTGTGATGATCCATCGATGATCAAGATTACGTCTGAAAATAACAAAAGAACACGTGCAACGTGTGATGATCCATGGATGATCACGATAACGTCTGATAATAACAAAAGAAAACGTGCTAAGTACTGTGATGATCCAGATTATGATCCGGATTATGTGAAGAAGCTTAAGGTATATAAAGTGCTCAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

106

Amino Acids

12.23

Weight (kDa)

9.47

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24060 AT5G15030 AT5G15040 AT5G15040 AT5G15040
rosa_chinensis	RchiOBHm_Chr6g0269611
rosa_laevigata	RLG00000013843 RLG00000018235
rosa_multiflora	Rmu_sc0003863.1_g000005
rosa_roxburghii	Rroxscaffold_7G00198570
rosa_rugosa	Rorug06G0049100 Rorug06G0049200 Rorug06G0049200 Rorug06G0049300 Rorug06G0049400.1
rosa_samantha	Rh6AG169200 Rh6AG169300 Rh6BG174500 Rh6CG168800 Rh6DG160700
rosa_wichuraiana	Rw6G014560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	319
AccI	GTMKAC	1 cut(s)	39
AccIII	TCCGGA	1 cut(s)	274
AclWI	GGATC	4 cut(s)	131, 191, 254, 266
AcvI	CACGTG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflII	CTTAAG	1 cut(s)	293
AflIII	ACRYGT	2 cut(s)	179, 188
AluBI	AGCT	3 cut(s)	50, 61, 292
AluI	AGCT	3 cut(s)	50, 61, 292
Alw21I	GWGCWC	1 cut(s)	312
AlwI	GGATC	4 cut(s)	131, 191, 254, 266
Ama87I	CYCGRG	1 cut(s)	74
Aor13HI	TCCGGA	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	74
BbrPI	CACGTG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	312
BccI	CCATC	3 cut(s)	74, 106, 148
BclI	TGATCA	2 cut(s)	147, 207
BfrI	CTTAAG	1 cut(s)	293
BlpI	GCTNAGC	1 cut(s)	81
BmcAI	AGTACT	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	74
Bpu1102I	GCTNAGC	1 cut(s)	81
Bsa29I	ATCGAT	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	75, 200
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse8I	GATNNNNATC	1 cut(s)	270
BseAI	TCCGGA	1 cut(s)	274
BseCI	ATCGAT	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	75, 200
BseGI	GGATG	2 cut(s)	66, 210
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	72
BseYI	CCCAGC	1 cut(s)	50
BshVI	ATCGAT	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	6 cut(s)	136, 147, 196, 207, 259, 271
Bsp1720I	GCTNAGC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	73
BspDI	ATCGAT	1 cut(s)	143
BspEI	TCCGGA	1 cut(s)	274
BspPI	GGATC	4 cut(s)	131, 191, 254, 266
BspTI	CTTAAG	1 cut(s)	293
BssECI	CCNNGG	2 cut(s)	75, 200
BssMI	GATC	6 cut(s)	136, 147, 196, 207, 259, 271
BssT1I	CCWWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	254
BstAFI	CTTAAG	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	182
BstDEI	CTNAG	4 cut(s)	57, 81, 126, 246
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	66, 210
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	6 cut(s)	139, 150, 199, 210, 262, 274
BstMBI	GATC	6 cut(s)	136, 147, 196, 207, 259, 271
Bsu15I	ATCGAT	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	2 cut(s)	66, 210
CfoI	GCGC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	143
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	4 cut(s)	50, 61, 80, 292
CviKI_1	RGCY	4 cut(s)	50, 61, 80, 292
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	4 cut(s)	57, 81, 126, 246
DpnI	GATC	6 cut(s)	138, 149, 198, 209, 261, 273
DpnII	GATC	6 cut(s)	136, 147, 196, 207, 259, 271
Eco130I	CCWWGG	1 cut(s)	200
Eco72I	CACGTG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	1 cut(s)	204
FaiI	YATR	7 cut(s)	90, 202, 270, 282, 301, 303, 319
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	1 cut(s)	200
FbaI	TGATCA	2 cut(s)	147, 207
FblI	GTMKAC	1 cut(s)	39
FokI	GGATG	2 cut(s)	53, 217
GlaI	GCGC	1 cut(s)	96
GsaI	CCCAGC	1 cut(s)	54
HapII	CCGG	1 cut(s)	275
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	3 cut(s)	103, 163, 223
Hpy188III	TCNNGA	5 cut(s)	74, 151, 211, 263, 275
Hpy8I	GTNNAC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	6 cut(s)	121, 158, 181, 188, 218, 241
HpyCH4V	TGCA	1 cut(s)	185
HpyF3I	CTNAG	4 cut(s)	57, 81, 126, 246
HpySE526I	ACGT	6 cut(s)	121, 158, 181, 188, 218, 241
Hsp92II	CATG	1 cut(s)	204
HspAI	GCGC	1 cut(s)	95
Kpn2I	TCCGGA	1 cut(s)	274
Ksp22I	TGATCA	2 cut(s)	147, 207
Kzo9I	GATC	6 cut(s)	136, 147, 196, 207, 259, 271
LpnPI	CCDG	3 cut(s)	36, 276, 288
MaeII	ACGT	6 cut(s)	121, 158, 181, 188, 218, 241
MalI	GATC	6 cut(s)	138, 149, 198, 209, 261, 273
MboI	GATC	6 cut(s)	136, 147, 196, 207, 259, 271
MboII	GAAGA	3 cut(s)	11, 14, 298
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	1 cut(s)	314
MnlI	CCTC	2 cut(s)	70, 81
MroI	TCCGGA	1 cut(s)	274
MseI	TTAA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	50
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	6 cut(s)	136, 147, 196, 207, 259, 271
NlaIII	CATG	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	16
PmaCI	CACGTG	1 cut(s)	182
PmlI	CACGTG	1 cut(s)	182
Ppu21I	YACGTR	1 cut(s)	182
PsiI	TTATAA	1 cut(s)	319
PspCI	CACGTG	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	294
Sau3AI	GATC	6 cut(s)	136, 147, 196, 207, 259, 271
ScaI	AGTACT	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	6 cut(s)	124, 161, 184, 191, 221, 244
TaqI	TCGA	1 cut(s)	143
TasI	AATT	1 cut(s)	314
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.