Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009770

Physical Location & Seq

Genomic Coordinates Forward (+)

27081564 .. 27084904

Gene Structure 3341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG169300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAAGAAACGTTTCCAAAATGATGAGCGGGTATACAAGTCATTCGTCAACATAGTGAATATGTATGTAAAGGAGCACAAGGACGTAAATGAGGTTTACCAGGAGGTTGCTTCTCTATTTGATGACCAACCAGATTTGCTGGATGAGTTCACTGGATTTTTACCACCAGATATGTCAGCAACAACTTCAACTAATCAGGGGCAATATGGTTGCAGTGCATATCCCTGTTTTAAAAAGCAGAGCTCTGCTATATCCACTTTGCAACCAATGCCTATTGGCACGCAACATAGGCTGGATAAGATTACTTCTCATGGTGATCATGATATTAGTGTTGATCGTCCTGAGCTAGATGATGACAACGGAATGATGAAAGTACTGAAGGAGCAGAGAAAGCGTTTTTCTGAGATGGAGAATAGGGATAGGAGAAATCATGACCATGAAGATAGAGAACTGGAGACTGATAACAACAGAGACTACAACTTGCAGCGTTTTCCAGAGGAAAAAAAATCTTCCAGGAATGTTGAAGGTTTTGGAGCGAATGCTAACTTTACTCCTAATGATGACAAAGACACCTTGAAGAGCAAGTACAGCCAGGCATTCGGTTTCTGTGAGAAAGTGAATGAGCGTTTGTGCAGCCAAGATGACTACCAGGAATTTTTGAAGTGCCTCCGCAGTTATAGCAATGGGATTATTACAAGGAATGATTTACAAAATTTGGGTGGCATGTTCTCTCTCGTATGGAAACTCATCTTGGATTTGATGTTTGGAAATTTTAGGTTTGAGCTAGATATGCTGTTGGAGTCAATGAGCTCAACTTCTAAGCGAGCAGAGGAACTGTCGAACAGCATGAATGAAAATAAACTCAGTATGGAAACTCAAATTCATATTGAAGACCACTTTACTGCTCAAAACTTGAGGTGCATTGAACTTTTATATGGTGACCATGGTCTTAATGTGGTGGACATACTGCGGAAAAGTCCAACGCTCGCTCTGCCTGTCATATTAACCCGCCTGAAACAGAAACAAGAGGAATGGACAAGGTGTAGAGCGGATTTCAACAAGGTTTGGGCTGATATATATGCTAAGAACCATGACAAATCACTTGATCACTGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

372

Amino Acids

43.38

Weight (kDa)

5.48

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	11 - 54	2.4e-14	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24060 AT5G15030 AT5G15040 AT5G15040 AT5G15040
rosa_chinensis	RchiOBHm_Chr6g0269611
rosa_laevigata	RLG00000013843 RLG00000018235
rosa_multiflora	Rmu_sc0003863.1_g000005
rosa_roxburghii	Rroxscaffold_7G00198570
rosa_rugosa	Rorug06G0049100 Rorug06G0049200 Rorug06G0049200 Rorug06G0049300 Rorug06G0049400.1
rosa_samantha	Rh6AG169200 Rh6AG169300 Rh6BG174500 Rh6CG168800 Rh6DG160700
rosa_wichuraiana	Rw6G014560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	28, 1049
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	5 cut(s)	28, 670, 970, 1009, 1049
AclI	AACGTT	1 cut(s)	10
AcsI	RAATTY	4 cut(s)	653, 712, 769, 879
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	2 cut(s)	375, 587
AgsI	TTSAA	7 cut(s)	189, 524, 577, 661, 890, 926, 1057
AjnI	CCWGG	4 cut(s)	99, 512, 591, 648
AjuI	GAANNNNNNNTTGG	2 cut(s)	734, 766
AluBI	AGCT	4 cut(s)	243, 346, 784, 810
AluI	AGCT	4 cut(s)	243, 346, 784, 810
Alw21I	GWGCWC	3 cut(s)	78, 245, 812
Alw26I	GTCTC	2 cut(s)	449, 465
ApeKI	GCWGC	2 cut(s)	484, 633
ApoI	RAATTY	4 cut(s)	653, 712, 769, 879
Asp700I	GAANNNNTTC	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	326, 950
BanII	GRGCYC	2 cut(s)	245, 812
BarI	GAAGNNNNNNTAC	2 cut(s)	569, 601
BbsI	GAAGAC	1 cut(s)	897
Bbv12I	GWGCWC	3 cut(s)	78, 245, 812
BbvI	GCAGC	2 cut(s)	496, 645
BccI	CCATC	1 cut(s)	400
BciT130I	CCWGG	4 cut(s)	101, 514, 593, 650
BclI	TGATCA	2 cut(s)	316, 1105
BcoDI	GTCTC	2 cut(s)	449, 465
BfaI	CTAG	2 cut(s)	347, 785
BisI	GCNGC	2 cut(s)	485, 634
BlsI	GCNGC	2 cut(s)	486, 635
BmcAI	AGTACT	1 cut(s)	375
Bme1390I	CCNGG	4 cut(s)	101, 514, 593, 650
BmrFI	CCNGG	4 cut(s)	101, 514, 593, 650
BoxI	GACNNNNGTC	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	897
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	934
BsaJI	CCNNGG	1 cut(s)	943
Bse1I	ACTGG	2 cut(s)	157, 456
Bse3DI	GCAATG	1 cut(s)	688
BseBI	CCWGG	4 cut(s)	101, 514, 593, 650
BseDI	CCNNGG	1 cut(s)	943
BseGI	GGATG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	3 cut(s)	333, 393, 877
BseNI	ACTGG	2 cut(s)	157, 456
BseXI	GCAGC	2 cut(s)	496, 645
BsgI	GTGCAG	1 cut(s)	652
BsiHKAI	GWGCWC	3 cut(s)	78, 245, 812
BsmAI	GTCTC	2 cut(s)	449, 465
BsmI	GAATGC	2 cut(s)	544, 596
Bsp1286I	GDGCHC	3 cut(s)	78, 245, 812
Bsp143I	GATC	3 cut(s)	316, 334, 1105
Bsp19I	CCATGG	1 cut(s)	943
BspACI	CCGC	5 cut(s)	28, 670, 970, 1009, 1049
BspCNI	CTCAG	3 cut(s)	334, 394, 876
BspHI	TCATGA	2 cut(s)	319, 430
BspQI	GCTCTTC	1 cut(s)	572
BsrBI	CCGCTC	2 cut(s)	28, 1049
BsrDI	GCAATG	1 cut(s)	688
BsrI	ACTGG	2 cut(s)	157, 456
BssECI	CCNNGG	1 cut(s)	943
BssMI	GATC	3 cut(s)	316, 334, 1105
BssNAI	GTATAC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	943
Bst1107I	GTATAC	1 cut(s)	34
Bst2UI	CCWGG	4 cut(s)	101, 514, 593, 650
Bst4CI	ACNGT	2 cut(s)	837, 1112
Bst6I	CTCTTC	1 cut(s)	572
BstAPI	GCANNNNNTGC	1 cut(s)	268
BstC8I	GCNNGC	3 cut(s)	281, 825, 987
BstDEI	CTNAG	5 cut(s)	342, 402, 819, 863, 1083
BstDSI	CCRYGG	1 cut(s)	943
BstEII	GGTNACC	1 cut(s)	938
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	3 cut(s)	319, 337, 1108
BstMAI	GTCTC	2 cut(s)	449, 465
BstMBI	GATC	3 cut(s)	316, 334, 1105
BstMWI	GCNNNNNNNGC	7 cut(s)	268, 289, 391, 588, 678, 790, 991
BstNI	CCWGG	4 cut(s)	101, 514, 593, 650
BstNSI	RCATGY	1 cut(s)	727
BstPAI	GACNNNNGTC	1 cut(s)	945
BstPI	GGTNACC	1 cut(s)	938
BstSCI	CCNGG	4 cut(s)	99, 512, 591, 648
BstV1I	GCAGC	2 cut(s)	496, 645
BstV2I	GAAGAC	1 cut(s)	897
BstZ17I	GTATAC	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	943
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	3 cut(s)	150, 220, 1108
Cac8I	GCNNGC	3 cut(s)	281, 825, 987
CciI	TCATGA	2 cut(s)	319, 430
Csp6I	GTAC	2 cut(s)	374, 586
CviAII	CATG	8 cut(s)	311, 320, 431, 437, 724, 847, 944, 1091
CviJI	RGCY	8 cut(s)	243, 292, 346, 591, 636, 784, 810, 1070
CviKI_1	RGCY	8 cut(s)	243, 292, 346, 591, 636, 784, 810, 1070
CviQI	GTAC	2 cut(s)	374, 586
DdeI	CTNAG	5 cut(s)	342, 402, 819, 863, 1083
DpnI	GATC	3 cut(s)	318, 336, 1107
DpnII	GATC	3 cut(s)	316, 334, 1105
DraI	TTTAAA	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
Ecl136II	GAGCTC	2 cut(s)	243, 810
Eco130I	CCWWGG	1 cut(s)	943
Eco24I	GRGCYC	2 cut(s)	245, 812
Eco53kI	GAGCTC	2 cut(s)	243, 810
Eco57I	CTGAAG	1 cut(s)	398
Eco91I	GGTNACC	1 cut(s)	938
EcoICRI	GAGCTC	2 cut(s)	243, 810
EcoO65I	GGTNACC	1 cut(s)	938
EcoRII	CCWGG	4 cut(s)	99, 512, 591, 648
EcoT14I	CCWWGG	1 cut(s)	943
EcoT38I	GRGCYC	2 cut(s)	245, 812
ErhI	CCWWGG	1 cut(s)	943
FaeI	CATG	8 cut(s)	314, 323, 434, 440, 727, 850, 947, 1094
FatI	CATG	8 cut(s)	310, 319, 430, 436, 723, 846, 943, 1090
FauI	CCCGC	2 cut(s)	21, 1016
FbaI	TGATCA	2 cut(s)	316, 1105
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	485, 634
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	2 cut(s)	245, 812
Fsp4HI	GCNGC	2 cut(s)	485, 634
FspBI	CTAG	2 cut(s)	347, 785
GluI	GCNGC	2 cut(s)	485, 634
GsuI	CTGGAG	1 cut(s)	473
Hin1II	CATG	8 cut(s)	314, 323, 434, 440, 727, 850, 947, 1094
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	800
HphI	GGTGA	2 cut(s)	326, 950
Hpy166II	GTNNAC	5 cut(s)	34, 49, 97, 150, 961
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	4 cut(s)	320, 341, 431, 494
Hpy8I	GTNNAC	5 cut(s)	34, 49, 97, 150, 961
HpyAV	CCTTC	2 cut(s)	373, 518
HpyCH4III	ACNGT	2 cut(s)	837, 1112
HpyCH4IV	ACGT	2 cut(s)	10, 84
HpyCH4V	TGCA	6 cut(s)	213, 218, 262, 484, 633, 921
HpyF10VI	GCNNNNNNNGC	7 cut(s)	268, 289, 391, 588, 678, 790, 991
HpyF3I	CTNAG	5 cut(s)	342, 402, 819, 863, 1083
HpySE526I	ACGT	2 cut(s)	10, 84
Hsp92II	CATG	8 cut(s)	314, 323, 434, 440, 727, 850, 947, 1094
Ksp22I	TGATCA	2 cut(s)	316, 1105
Kzo9I	GATC	3 cut(s)	316, 334, 1105
LguI	GCTCTTC	1 cut(s)	572
LmnI	GCTCC	3 cut(s)	73, 382, 533
Lsp1109I	GCAGC	2 cut(s)	496, 645
MaeI	CTAG	2 cut(s)	347, 785
MaeII	ACGT	2 cut(s)	10, 84
MaeIII	GTNAC	1 cut(s)	938
MalI	GATC	3 cut(s)	318, 336, 1107
MbiI	CCGCTC	2 cut(s)	28, 1049
MboI	GATC	3 cut(s)	316, 334, 1105
MboII	GAAGA	5 cut(s)	16, 452, 501, 589, 902
MhlI	GDGCHC	3 cut(s)	78, 245, 812
MluCI	AATT	4 cut(s)	653, 712, 769, 879
MlyI	GAGTC	1 cut(s)	809
MmeI	TCCRAC	2 cut(s)	777, 1004
MnlI	CCTC	7 cut(s)	85, 97, 490, 677, 823, 909, 1021
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	3 cut(s)	231, 951, 1004
MslI	CAYNNNNRTG	1 cut(s)	435
MspR9I	CCNGG	4 cut(s)	101, 514, 593, 650
Mva1269I	GAATGC	2 cut(s)	544, 596
MvaI	CCWGG	4 cut(s)	101, 514, 593, 650
MwoI	GCNNNNNNNGC	7 cut(s)	268, 289, 391, 588, 678, 790, 991
NcoI	CCATGG	1 cut(s)	943
NdeII	GATC	3 cut(s)	316, 334, 1105
NlaIII	CATG	8 cut(s)	314, 323, 434, 440, 727, 850, 947, 1094
NmuCI	GTSAC	1 cut(s)	938
NspI	RCATGY	1 cut(s)	727
PagI	TCATGA	2 cut(s)	319, 430
PciSI	GCTCTTC	1 cut(s)	572
PctI	GAATGC	2 cut(s)	544, 596
PdmI	GAANNNNTTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	486, 635
PleI	GAGTC	1 cut(s)	808
PpsI	GAGTC	1 cut(s)	808
PshAI	GACNNNNGTC	1 cut(s)	945
Psp124BI	GAGCTC	2 cut(s)	245, 812
Psp1406I	AACGTT	1 cut(s)	10
Psp6I	CCWGG	4 cut(s)	99, 512, 591, 648
PspEI	GGTNACC	1 cut(s)	938
PspGI	CCWGG	4 cut(s)	99, 512, 591, 648
RsaI	GTAC	2 cut(s)	375, 587
RsaNI	GTAC	2 cut(s)	374, 586
RseI	CAYNNNNRTG	1 cut(s)	435
SacI	GAGCTC	2 cut(s)	245, 812
SapI	GCTCTTC	1 cut(s)	572
SaqAI	TTAA	3 cut(s)	231, 951, 1004
SatI	GCNGC	2 cut(s)	485, 634
Sau3AI	GATC	3 cut(s)	316, 334, 1105
ScaI	AGTACT	1 cut(s)	375
SchI	GAGTC	1 cut(s)	809
ScrFI	CCNGG	4 cut(s)	101, 514, 593, 650
SduI	GDGCHC	3 cut(s)	78, 245, 812
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	913
SmoI	CTYRAG	1 cut(s)	913
Sse9I	AATT	4 cut(s)	653, 712, 769, 879
SsiI	CCGC	5 cut(s)	28, 670, 970, 1009, 1049
SspMI	CTAG	2 cut(s)	347, 785
SstI	GAGCTC	2 cut(s)	245, 812
StyD4I	CCNGG	4 cut(s)	99, 512, 591, 648
StyI	CCWWGG	1 cut(s)	943
TaaI	ACNGT	2 cut(s)	837, 1112
TaiI	ACGT	2 cut(s)	13, 87
TaqI	TCGA	1 cut(s)	839
TasI	AATT	4 cut(s)	653, 712, 769, 879
TatI	WGTACW	2 cut(s)	373, 585
Tru1I	TTAA	3 cut(s)	231, 951, 1004
Tru9I	TTAA	3 cut(s)	231, 951, 1004
TscAI	CASTG	3 cut(s)	157, 220, 1115
TseFI	GTSAC	1 cut(s)	938
TseI	GCWGC	2 cut(s)	484, 633
Tsp45I	GTSAC	1 cut(s)	938
TspDTI	ATGAA	6 cut(s)	17, 383, 453, 863, 867, 872
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	3 cut(s)	157, 220, 1115
XapI	RAATTY	4 cut(s)	653, 712, 769, 879
XceI	RCATGY	1 cut(s)	727
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	2 cut(s)	347, 785
ZrmI	AGTACT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.