Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003863.1

Orthogroup ID

OG0009770

Physical Location & Seq

Genomic Coordinates Forward (+)

42015 .. 43992

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003863.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgaagagaatgaagagaataacagacgaagcattcgcttcttttcaatcattgccgcttgcttcttcgcgcggtgactccgttggagtaggtgcctcacagaaattggcgatgaatgatgctcttacatacatcaaagaagtggaggacgcgtttcaagaccaaagagaaaagtataatatgtttcttgaggtcttgaaggatttccccttcaagcctcaaagaaatgacatggtaggtgtcattgcaagagtaagggaattgtttaaagggcataccaaggtacttttggggtttaataccttcttgccaaagggttttgagataactcttgaggaagtggaaccaataaagacagcttcacagaaattgtcgatgaatgatgctcgtgtcattgcaagagtaatggaattgtttaaagggcataccaagttacttttggggtttaacaccttcttgccaaagggttttgagataactcttgaggaagtcgaaccaataaggacagttaagtccggacaagctatcagttttttaaacaagatgaagaaacgtttccaaaatgatgagcgggtatacaagtcattcgtcaacatagtgaatatgtatgtaaaggagcacaaggacgtaaatgaggtttaccaggaggttgcttctctatttgatgaccaaccagatttgctggatgagttcactggatttttaccaccagatatgtcagcaacaacttcaactaatcaggggcaatatggttgcagtgcatatccctgttttaaaaagcagagctctgctatacccactttgcaaccaatgcctattggcacgcaacataggctggataagattacttctcatggtgatcatgatattagtgttgatcgtcctgagctagatgatgacaacggaatgatgaaagcactgaaggagcagagaaagcgtttttctgagatggagaatagggataggagaaatcatgaccatgaagatagagaactggagactgataacaacagagactacaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

341

Amino Acids

39.3

Weight (kDa)

5.98

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24060 AT5G15030 AT5G15040 AT5G15040 AT5G15040
rosa_chinensis	RchiOBHm_Chr6g0269611
rosa_laevigata	RLG00000013843 RLG00000018235
rosa_multiflora	Rmu_sc0003863.1_g000005
rosa_roxburghii	Rroxscaffold_7G00198570
rosa_rugosa	Rorug06G0049100 Rorug06G0049200 Rorug06G0049200 Rorug06G0049300 Rorug06G0049400.1
rosa_samantha	Rh6AG169200 Rh6AG169300 Rh6BG174500 Rh6CG168800 Rh6DG160700
rosa_wichuraiana	Rw6G014560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	576
AccII	CGCG	3 cut(s)	70, 72, 152
AccIII	TCCGGA	1 cut(s)	515
AciI	CCGC	3 cut(s)	56, 72, 571
AclI	AACGTT	1 cut(s)	553
AcuI	CTGAAG	1 cut(s)	941
AfaI	GTAC	1 cut(s)	285
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	5 cut(s)	47, 158, 199, 214, 732
AjnI	CCWGG	1 cut(s)	642
AluBI	AGCT	4 cut(s)	359, 524, 786, 889
AluI	AGCT	4 cut(s)	359, 524, 786, 889
Alw21I	GWGCWC	2 cut(s)	621, 788
Alw26I	GTCTC	2 cut(s)	992, 1008
Aor13HI	TCCGGA	1 cut(s)	515
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
Asp700I	GAANNNNTTC	2 cut(s)	203, 554
AspLEI	GCGC	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	86, 869
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	788
BauI	CACGAG	1 cut(s)	387
Bbv12I	GWGCWC	2 cut(s)	621, 788
BccI	CCATC	1 cut(s)	943
BciT130I	CCWGG	1 cut(s)	644
BclI	TGATCA	1 cut(s)	859
BcoDI	GTCTC	2 cut(s)	992, 1008
BfaI	CTAG	2 cut(s)	890, 1024
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	644
BmiI	GGNNCC	2 cut(s)	94, 345
BmrFI	CCNGG	1 cut(s)	644
BmsI	GCATC	2 cut(s)	109, 373
BpmI	CTGGAG	1 cut(s)	1016
Bpu10I	CCTNAGC	1 cut(s)	885
BpuEI	CTTGAG	3 cut(s)	209, 353, 503
BsaJI	CCNNGG	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	515
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bse1I	ACTGG	2 cut(s)	700, 999
Bse3DI	GCAATG	3 cut(s)	50, 243, 393
BseAI	TCCGGA	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	644
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	691
BseMI	GCAATG	3 cut(s)	50, 243, 393
BseMII	CTCAG	2 cut(s)	876, 936
BseNI	ACTGG	2 cut(s)	700, 999
Bsh1236I	CGCG	3 cut(s)	70, 72, 152
BshNI	GGYRCC	1 cut(s)	92
BsiHKAI	GWGCWC	2 cut(s)	621, 788
BsiSI	CCGG	1 cut(s)	516
BsmAI	GTCTC	2 cut(s)	992, 1008
BsmI	GAATGC	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	621, 788
Bsp13I	TCCGGA	1 cut(s)	515
Bsp143I	GATC	2 cut(s)	859, 877
BspACI	CCGC	3 cut(s)	56, 72, 571
BspCNI	CTCAG	2 cut(s)	877, 937
BspEI	TCCGGA	1 cut(s)	515
BspFNI	CGCG	3 cut(s)	70, 72, 152
BspHI	TCATGA	2 cut(s)	862, 973
BspLI	GGNNCC	2 cut(s)	94, 345
BspT107I	GGYRCC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	571
BsrDI	GCAATG	3 cut(s)	50, 243, 393
BsrI	ACTGG	2 cut(s)	700, 999
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	2 cut(s)	859, 877
BssNAI	GTATAC	1 cut(s)	577
BssSI	CACGAG	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	279
Bst1107I	GTATAC	1 cut(s)	577
Bst2BI	CACGAG	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	811
BstC8I	GCNNGC	2 cut(s)	60, 824
BstDEI	CTNAG	2 cut(s)	885, 945
BstF5I	GGATG	1 cut(s)	691
BstFNI	CGCG	3 cut(s)	70, 72, 152
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	2 cut(s)	862, 880
BstMAI	GTCTC	2 cut(s)	992, 1008
BstMBI	GATC	2 cut(s)	859, 877
BstMWI	GCNNNNNNNGC	3 cut(s)	811, 832, 934
BstNI	CCWGG	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	642
BstUI	CGCG	3 cut(s)	70, 72, 152
BstZ17I	GTATAC	1 cut(s)	577
BtgZI	GCGATG	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	691
BtsI	GCAGTG	1 cut(s)	763
BtsIMutI	CAGTG	3 cut(s)	693, 763, 917
Cac8I	GCNNGC	2 cut(s)	60, 824
CciI	TCATGA	2 cut(s)	862, 973
CfoI	GCGC	1 cut(s)	72
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	5 cut(s)	232, 854, 863, 974, 980
CviJI	RGCY	6 cut(s)	217, 359, 524, 786, 835, 889
CviKI_1	RGCY	6 cut(s)	217, 359, 524, 786, 835, 889
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	2 cut(s)	885, 945
DpnI	GATC	2 cut(s)	861, 879
DpnII	GATC	2 cut(s)	859, 877
DraI	TTTAAA	4 cut(s)	268, 418, 537, 775
DrdI	GACNNNNNNGTC	1 cut(s)	511
DseDI	GACNNNNNNGTC	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	786
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	788
Eco53kI	GAGCTC	1 cut(s)	786
Eco57I	CTGAAG	1 cut(s)	941
EcoICRI	GAGCTC	1 cut(s)	786
EcoRII	CCWGG	1 cut(s)	642
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	788
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	5 cut(s)	235, 857, 866, 977, 983
FatI	CATG	5 cut(s)	231, 853, 862, 973, 979
FauI	CCCGC	1 cut(s)	564
FbaI	TGATCA	1 cut(s)	859
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	1 cut(s)	698
FriOI	GRGCYC	1 cut(s)	788
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	2 cut(s)	890, 1024
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	1016
HapII	CCGG	1 cut(s)	516
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	5 cut(s)	235, 857, 866, 977, 983
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	2 cut(s)	86, 869
Hpy166II	GTNNAC	4 cut(s)	577, 592, 640, 693
Hpy188I	TCNGA	1 cut(s)	946
Hpy188III	TCNNGA	9 cut(s)	158, 188, 196, 332, 482, 516, 863, 884, 974
Hpy8I	GTNNAC	4 cut(s)	577, 592, 640, 693
HpyAV	CCTTC	5 cut(s)	193, 220, 313, 463, 916
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	2 cut(s)	553, 627
HpyCH4V	TGCA	5 cut(s)	248, 398, 756, 761, 805
HpyF10VI	GCNNNNNNNGC	3 cut(s)	811, 832, 934
HpyF3I	CTNAG	2 cut(s)	885, 945
HpySE526I	ACGT	2 cut(s)	553, 627
Hsp92II	CATG	5 cut(s)	235, 857, 866, 977, 983
HspAI	GCGC	1 cut(s)	70
Kpn2I	TCCGGA	1 cut(s)	515
Ksp22I	TGATCA	1 cut(s)	859
Kzo9I	GATC	2 cut(s)	859, 877
LmnI	GCTCC	2 cut(s)	616, 925
LweI	GCATC	2 cut(s)	109, 373
MaeI	CTAG	2 cut(s)	890, 1024
MaeII	ACGT	2 cut(s)	553, 627
MaeIII	GTNAC	2 cut(s)	74, 432
MalI	GATC	2 cut(s)	861, 879
MbiI	CCGCTC	1 cut(s)	571
MboI	GATC	2 cut(s)	859, 877
MboII	GAAGA	5 cut(s)	16, 25, 57, 559, 995
MhlI	GDGCHC	2 cut(s)	621, 788
MluCI	AATT	4 cut(s)	104, 260, 368, 410
MluI	ACGCGT	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	8 cut(s)	106, 139, 184, 228, 328, 478, 628, 640
MroI	TCCGGA	1 cut(s)	515
MroXI	GAANNNNTTC	2 cut(s)	203, 554
MseI	TTAA	7 cut(s)	267, 297, 417, 447, 510, 536, 774
MslI	CAYNNNNRTG	1 cut(s)	978
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	644
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	644
MvnI	CGCG	3 cut(s)	70, 72, 152
MwoI	GCNNNNNNNGC	3 cut(s)	811, 832, 934
NdeII	GATC	2 cut(s)	859, 877
NlaIII	CATG	5 cut(s)	235, 857, 866, 977, 983
NlaIV	GGNNCC	2 cut(s)	94, 345
NmuCI	GTSAC	1 cut(s)	74
PagI	TCATGA	2 cut(s)	862, 973
PctI	GAATGC	1 cut(s)	32
PdmI	GAANNNNTTC	2 cut(s)	203, 554
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	788
Psp1406I	AACGTT	1 cut(s)	553
Psp6I	CCWGG	1 cut(s)	642
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	2 cut(s)	94, 345
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	978
SacI	GAGCTC	1 cut(s)	788
SaqAI	TTAA	7 cut(s)	267, 297, 417, 447, 510, 536, 774
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	2 cut(s)	859, 877
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	644
SduI	GDGCHC	2 cut(s)	621, 788
SfaNI	GCATC	2 cut(s)	109, 373
SmiMI	CAYNNNNRTG	1 cut(s)	978
SmlI	CTYRAG	3 cut(s)	188, 332, 482
SmoI	CTYRAG	3 cut(s)	188, 332, 482
Sse9I	AATT	4 cut(s)	104, 260, 368, 410
SsiI	CCGC	3 cut(s)	56, 72, 571
SspMI	CTAG	2 cut(s)	890, 1024
SstI	GAGCTC	1 cut(s)	788
StyD4I	CCNGG	1 cut(s)	642
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	2 cut(s)	556, 630
TaqI	TCGA	2 cut(s)	374, 492
TasI	AATT	4 cut(s)	104, 260, 368, 410
TauI	GCSGC	1 cut(s)	58
Tru1I	TTAA	7 cut(s)	267, 297, 417, 447, 510, 536, 774
Tru9I	TTAA	7 cut(s)	267, 297, 417, 447, 510, 536, 774
TscAI	CASTG	3 cut(s)	700, 763, 924
TseFI	GTSAC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	7 cut(s)	17, 26, 128, 392, 560, 926, 996
TspGWI	ACGGA	2 cut(s)	70, 918
TspRI	CASTG	3 cut(s)	700, 763, 924
XcmI	CCANNNNNNNNNTGG	2 cut(s)	286, 436
XmiI	GTMKAC	1 cut(s)	576
XmnI	GAANNNNTTC	2 cut(s)	203, 554
XspI	CTAG	2 cut(s)	890, 1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.