Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009770

Physical Location & Seq

Genomic Coordinates Reverse (-)

4867971 .. 4869079

Gene Structure 1109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCCTGGATATTTCATAACAATCTCTCTAATTGTTGATGTTTTGATTAGTCATGAAGAAACGGAGCGGACTCCTGATGAAATAGTCGTGCCAAGGTCTCCAAGGCATGGAGGGAATATAGAAAGATCTATATATCTAGATCCTTCTTTAGGGATGACCATTAGTGATGCTCGGGCATACCTTCAGCAAGTGAAAAATACGTTTATTGATCATGATGAAAGGGACAAATATGCTATGTTCCGTAAGGTTTTGTTCGATTTTAAGGCACAACGGATTGATCGTTCTATATTGTATGCACGATTGAAGAAGTTGTTTAAGAAGCACAAACATTTGATTATCGGCTTTAACACCTTTTTGTCACTTGGAGATAAGATATTTCTTCATGGTGACGCAGAAGCCTCTACTAGCTCCACCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

139

Amino Acids

15.99

Weight (kDa)

8.86

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	75 - 119	9.3e-13	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24060 AT5G15030 AT5G15040 AT5G15040 AT5G15040
rosa_chinensis	RchiOBHm_Chr6g0269611
rosa_laevigata	RLG00000013843 RLG00000018235
rosa_multiflora	Rmu_sc0003863.1_g000005
rosa_roxburghii	Rroxscaffold_7G00198570
rosa_rugosa	Rorug06G0049100 Rorug06G0049200 Rorug06G0049200 Rorug06G0049300 Rorug06G0049400.1
rosa_samantha	Rh6AG169200 Rh6AG169300 Rh6BG174500 Rh6CG168800 Rh6DG160700
rosa_wichuraiana	Rw6G014560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	107
AccBSI	CCGCTC	1 cut(s)	67
AciI	CCGC	2 cut(s)	67, 414
AclWI	GGATC	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	107, 149
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	4
AloI	GAACNNNNNNTCC	2 cut(s)	265, 297
AluBI	AGCT	1 cut(s)	408
AluI	AGCT	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	6
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	2 cut(s)	137, 405
BglII	AGATCT	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	6
BmeT110I	CYCGRG	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	92, 101
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 149
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	92, 101
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	107, 149
BsiHKCI	CYCGRG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	107, 149
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	236
Bso31I	GGTCTC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	125, 139, 208, 277
BspACI	CCGC	2 cut(s)	67, 414
BspHI	TCATGA	2 cut(s)	52, 211
BspPI	GGATC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	102
BsrBI	CCGCTC	1 cut(s)	67
BssECI	CCNNGG	2 cut(s)	92, 101
BssMI	GATC	4 cut(s)	125, 139, 208, 277
BssT1I	CCWWGG	2 cut(s)	92, 101
Bst2UI	CCWGG	1 cut(s)	6
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	4 cut(s)	128, 142, 211, 280
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	4 cut(s)	125, 139, 208, 277
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstX2I	RGATCY	2 cut(s)	125, 139
BstYI	RGATCY	2 cut(s)	125, 139
BtsCI	GGATG	1 cut(s)	159
CciI	TCATGA	2 cut(s)	52, 211
CseI	GACGC	1 cut(s)	398
CviAII	CATG	4 cut(s)	53, 107, 212, 383
CviJI	RGCY	3 cut(s)	342, 398, 408
CviKI_1	RGCY	3 cut(s)	342, 398, 408
DpnI	GATC	4 cut(s)	127, 141, 210, 279
DpnII	GATC	4 cut(s)	125, 139, 208, 277
Eco130I	CCWWGG	2 cut(s)	92, 101
Eco31I	GGTCTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	171
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	2 cut(s)	92, 101
ErhI	CCWWGG	2 cut(s)	92, 101
FaeI	CATG	4 cut(s)	56, 110, 215, 386
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	4 cut(s)	52, 106, 211, 382
FbaI	TGATCA	1 cut(s)	208
FokI	GGATG	1 cut(s)	166
FspBI	CTAG	2 cut(s)	137, 405
HgaI	GACGC	1 cut(s)	398
Hin1II	CATG	4 cut(s)	56, 110, 215, 386
HinfI	GANTC	1 cut(s)	70
HphI	GGTGA	1 cut(s)	398
Hpy188III	TCNNGA	4 cut(s)	53, 74, 137, 212
HpyAV	CCTTC	2 cut(s)	153, 191
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	296
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	4 cut(s)	56, 110, 215, 386
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	125, 139, 208, 277
LmnI	GCTCC	2 cut(s)	64, 413
LpnPI	CCDG	2 cut(s)	18, 87
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	2 cut(s)	137, 405
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	357, 386
MalI	GATC	4 cut(s)	127, 141, 210, 279
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	4 cut(s)	125, 139, 208, 277
MboII	GAAGA	3 cut(s)	68, 316, 371
MflI	RGATCY	2 cut(s)	125, 139
MluCI	AATT	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	2 cut(s)	104, 409
MseI	TTAA	3 cut(s)	261, 315, 345
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
NdeII	GATC	4 cut(s)	125, 139, 208, 277
NlaIII	CATG	4 cut(s)	56, 110, 215, 386
NmuCI	GTSAC	2 cut(s)	357, 386
PagI	TCATGA	2 cut(s)	52, 211
PcsI	WCGNNNNNNNCGW	1 cut(s)	277
PflMI	CCANNNNNTGG	1 cut(s)	107
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	125, 139
SaqAI	TTAA	3 cut(s)	261, 315, 345
Sau3AI	GATC	4 cut(s)	125, 139, 208, 277
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	6 cut(s)	98, 183, 203, 249, 353, 410
SfaNI	GCATC	1 cut(s)	157
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	2 cut(s)	67, 414
SspMI	CTAG	2 cut(s)	137, 405
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	2 cut(s)	92, 101
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	255
TasI	AATT	1 cut(s)	30
Tru1I	TTAA	3 cut(s)	261, 315, 345
Tru9I	TTAA	3 cut(s)	261, 315, 345
TseFI	GTSAC	2 cut(s)	357, 386
Tsp45I	GTSAC	2 cut(s)	357, 386
TspDTI	ATGAA	5 cut(s)	4, 69, 93, 231, 371
TspGWI	ACGGA	3 cut(s)	77, 230, 286
Van91I	CCANNNNNTGG	1 cut(s)	107
XagI	CCTNNNNNAGG	1 cut(s)	147
XbaI	TCTAGA	1 cut(s)	136
XspI	CTAG	2 cut(s)	137, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.