Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009770

Physical Location & Seq

Genomic Coordinates Reverse (-)

44173621 .. 44178841

Gene Structure 5221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGTTGGTGTCATTGCAAGAGTAAGGGAATTGTTTAAAGGGCATACCAAGTTACTTTTGGGGTTTAATACCATCTTGCCAAAGGATTTTGAGATAACTCTTGAGGAAGTGAAACCAAAAAAGACAGTTTCACAGAAATTGCCGACAAATGATCCTCTTACATACATCAAAGAAGTGGAGAACACCTTTCAAGACCAAAGAGAAAAGTATAATATGTTTCTTGAGGTCTTGAAGGATTTCCCCTTCAAGCCTCTAAATGACATGGTAGGTGTCATTGCAAGAGTAAGGGAATTGTTTAAAGGGCATACCAAGTTAAATTTGGGGTTTAATACCTTATTGCCAAAGGGTTTTGAGATAATTCTTGAGGAAATGGAACCAATAAAGACAGCTTCACAGAAATTGTCGATGAATGATGCTCGTACATACATCAAAGAAGTGGAGGACACGTTTCAAGACCAAAGAGAAAAGTATAATATGTTTCTTGAGGTCTTGAAGGATTTCCTTTTGAAGCCTGAAAGAAATGACATGGTAGGTGTCATTGCAAGAGTAATGGAATTGTTTAAAGGGCATACCAAGTTACTTTTGGGGTTTAATACCTTCTTGCCAAAGGGTTTGGAGATAATTGTTCGGAAAGTGGAACCAATAAGGACAGTTAAGTCCGGACAAGCTATCAGTTTTTTAAACAAGATGAAGAAACGTTTCCAAAATGATGAGCGGGTATACAAGTCATTCGTCAACATAGTGAATATGTATGTAAAGGAGCACAAGGATGCAAATGAGGTTTACCGGGAGGTTGCTTCTCTATTTGATGACCAACCAGATTTGCTGGATGAGTTCACAGGATTTTTACCACCAGATATGTCACCAACAACTTCAACTAATCAGGGGCAATATGGTTGCAGTGCATATCCCTGTTTTAATAAGCAGAGCTCTGCTATACCCACTTTGCAACCAATGCCTATTGGCACGCAACATTGGCTGGATAAGATTACTTCTCATGGTGATCATGATATTACTGTTGATCGTCCTGAGGTAGATGATGACAACGGACTGATGAAAGTACTGAAGGAGCAGAGAAAGGGTTTTTCTGAGATGGAGAATATGGATAGGAGAAATCATGACCATGAAGATAGAGAACTGGAGACTGATAACAACAGAGACTACGACTTTCAGTGCAAGTACAGCCAGGCATTCGGTTTCTGTGAGAAAGTTAATGAGCGTTTGTGCAGCCAAGATGACTACCATGAATTTTTGAAGTGCCTCCGCAGTTATAGCAATGGGATTATTACAAGGAATGATTTAAAAAATTTGGTACGTGCTACTATGCTATACCCAATAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

447

Amino Acids

52.11

Weight (kDa)

6.13

Isoelectric Point (pI)

25.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	3 - 26	6.2e-06	Paired amphipathic helix repeat
PAH	PF02671	68 - 113	1.8e-11	Paired amphipathic helix repeat
PAH	PF02671	155 - 201	1.5e-12	Paired amphipathic helix repeat
PAH	PF02671	240 - 283	1.3e-13	Paired amphipathic helix repeat
PAH	PF02671	413 - 439	1e-05	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24060 AT5G15030 AT5G15040 AT5G15040 AT5G15040
rosa_chinensis	RchiOBHm_Chr6g0269611
rosa_laevigata	RLG00000013843 RLG00000018235
rosa_multiflora	Rmu_sc0003863.1_g000005
rosa_roxburghii	Rroxscaffold_7G00198570
rosa_rugosa	Rorug06G0049100 Rorug06G0049200 Rorug06G0049200 Rorug06G0049300 Rorug06G0049400.1
rosa_samantha	Rh6AG169200 Rh6AG169300 Rh6BG174500 Rh6CG168800 Rh6DG160700
rosa_wichuraiana	Rw6G014560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	655
AccBSI	CCGCTC	1 cut(s)	715
AccI	GTMKAC	1 cut(s)	720
AccIII	TCCGGA	1 cut(s)	659
AciI	CCGC	2 cut(s)	715, 1264
AclI	AACGTT	1 cut(s)	697
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	3 cut(s)	316, 1247, 1306
AcuI	CTGAAG	1 cut(s)	1085
AfaI	GTAC	4 cut(s)	421, 1062, 1181, 1314
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	8 cut(s)	191, 232, 247, 452, 493, 508, 876, 1255
AjnI	CCWGG	1 cut(s)	1185
AluBI	AGCT	4 cut(s)	389, 668, 930, 1340
AluI	AGCT	4 cut(s)	389, 668, 930, 1340
Alw21I	GWGCWC	2 cut(s)	765, 932
Alw26I	GTCTC	2 cut(s)	1136, 1152
AlwI	GGATC	1 cut(s)	146
Aor13HI	TCCGGA	1 cut(s)	659
ApeKI	GCWGC	1 cut(s)	1227
ApoI	RAATTY	3 cut(s)	316, 1247, 1306
Asp700I	GAANNNNTTC	3 cut(s)	236, 497, 698
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	2 cut(s)	855, 1013
AxyI	CCTNAGG	1 cut(s)	1029
BanII	GRGCYC	1 cut(s)	932
Bbv12I	GWGCWC	2 cut(s)	765, 932
BbvI	GCAGC	1 cut(s)	1239
BccI	CCATC	2 cut(s)	80, 1087
BciT130I	CCWGG	1 cut(s)	1187
BclI	TGATCA	1 cut(s)	1003
BcnI	CCSGG	1 cut(s)	788
BcoDI	GTCTC	2 cut(s)	1136, 1152
BisI	GCNGC	1 cut(s)	1228
BlsI	GCNGC	1 cut(s)	1229
BmcAI	AGTACT	1 cut(s)	1062
Bme1390I	CCNGG	2 cut(s)	788, 1187
BmiI	GGNNCC	2 cut(s)	375, 639
BmrFI	CCNGG	2 cut(s)	788, 1187
BmsI	GCATC	2 cut(s)	403, 760
BpmI	CTGGAG	1 cut(s)	1160
BpuEI	CTTGAG	4 cut(s)	122, 242, 383, 503
BpuMI	CCSGG	1 cut(s)	788
BsaAI	YACGTR	1 cut(s)	1316
BsaWI	WCCGGW	1 cut(s)	659
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bse1I	ACTGG	1 cut(s)	1143
Bse21I	CCTNAGG	1 cut(s)	1029
Bse3DI	GCAATG	4 cut(s)	12, 273, 537, 1282
BseAI	TCCGGA	1 cut(s)	659
BseBI	CCWGG	1 cut(s)	1187
BseGI	GGATG	2 cut(s)	775, 835
BseMI	GCAATG	4 cut(s)	12, 273, 537, 1282
BseMII	CTCAG	2 cut(s)	1020, 1080
BseNI	ACTGG	1 cut(s)	1143
BseXI	GCAGC	1 cut(s)	1239
BsgI	GTGCAG	1 cut(s)	1246
BsiHKAI	GWGCWC	2 cut(s)	765, 932
BsiSI	CCGG	2 cut(s)	660, 787
BsmAI	GTCTC	2 cut(s)	1136, 1152
BsmI	GAATGC	1 cut(s)	1190
Bsp1286I	GDGCHC	2 cut(s)	765, 932
Bsp13I	TCCGGA	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	151, 1003, 1021
BspACI	CCGC	2 cut(s)	715, 1264
BspCNI	CTCAG	2 cut(s)	1021, 1081
BspEI	TCCGGA	1 cut(s)	659
BspHI	TCATGA	2 cut(s)	1006, 1117
BspLI	GGNNCC	2 cut(s)	375, 639
BspPI	GGATC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	715
BsrDI	GCAATG	4 cut(s)	12, 273, 537, 1282
BsrI	ACTGG	1 cut(s)	1143
BssMI	GATC	3 cut(s)	151, 1003, 1021
BssNAI	GTATAC	1 cut(s)	721
Bst1107I	GTATAC	1 cut(s)	721
Bst2UI	CCWGG	1 cut(s)	1187
Bst4CI	ACNGT	3 cut(s)	127, 652, 1018
BstAPI	GCANNNNNTGC	1 cut(s)	955
BstBAI	YACGTR	1 cut(s)	1316
BstC8I	GCNNGC	1 cut(s)	968
BstDEI	CTNAG	2 cut(s)	1029, 1089
BstF5I	GGATG	2 cut(s)	775, 835
BstKTI	GATC	3 cut(s)	154, 1006, 1024
BstMAI	GTCTC	2 cut(s)	1136, 1152
BstMBI	GATC	3 cut(s)	151, 1003, 1021
BstMWI	GCNNNNNNNGC	4 cut(s)	955, 976, 1182, 1272
BstNI	CCWGG	1 cut(s)	1187
BstSCI	CCNGG	2 cut(s)	786, 1185
BstV1I	GCAGC	1 cut(s)	1239
BstZ17I	GTATAC	1 cut(s)	721
Bsu36I	CCTNAGG	1 cut(s)	1029
BtsCI	GGATG	2 cut(s)	775, 835
BtsI	GCAGTG	1 cut(s)	907
BtsIMutI	CAGTG	2 cut(s)	907, 1178
Cac8I	GCNNGC	1 cut(s)	968
CciI	TCATGA	2 cut(s)	1006, 1117
Csp6I	GTAC	4 cut(s)	420, 1061, 1180, 1313
CviAII	CATG	7 cut(s)	262, 526, 998, 1007, 1118, 1124, 1244
CviJI	RGCY	9 cut(s)	250, 389, 511, 668, 930, 979, 1185, 1230, 1340
CviKI_1	RGCY	9 cut(s)	250, 389, 511, 668, 930, 979, 1185, 1230, 1340
CviQI	GTAC	4 cut(s)	420, 1061, 1180, 1313
DdeI	CTNAG	2 cut(s)	1029, 1089
DpnI	GATC	3 cut(s)	153, 1005, 1023
DpnII	GATC	3 cut(s)	151, 1003, 1021
DraI	TTTAAA	5 cut(s)	37, 298, 562, 681, 1302
DrdI	GACNNNNNNGTC	1 cut(s)	655
DseDI	GACNNNNNNGTC	1 cut(s)	655
Ecl136II	GAGCTC	1 cut(s)	930
Eco24I	GRGCYC	1 cut(s)	932
Eco53kI	GAGCTC	1 cut(s)	930
Eco57I	CTGAAG	1 cut(s)	1085
Eco81I	CCTNAGG	1 cut(s)	1029
EcoICRI	GAGCTC	1 cut(s)	930
EcoRII	CCWGG	1 cut(s)	1185
EcoT38I	GRGCYC	1 cut(s)	932
FaeI	CATG	7 cut(s)	265, 529, 1001, 1010, 1121, 1127, 1247
FatI	CATG	7 cut(s)	261, 525, 997, 1006, 1117, 1123, 1243
FauI	CCCGC	1 cut(s)	708
FbaI	TGATCA	1 cut(s)	1003
FblI	GTMKAC	1 cut(s)	720
Fnu4HI	GCNGC	1 cut(s)	1228
FokI	GGATG	2 cut(s)	782, 842
FriOI	GRGCYC	1 cut(s)	932
Fsp4HI	GCNGC	1 cut(s)	1228
GluI	GCNGC	1 cut(s)	1228
GsuI	CTGGAG	1 cut(s)	1160
HapII	CCGG	2 cut(s)	660, 787
Hin1II	CATG	7 cut(s)	265, 529, 1001, 1010, 1121, 1127, 1247
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HpaII	CCGG	2 cut(s)	660, 787
HphI	GGTGA	2 cut(s)	855, 1013
Hpy166II	GTNNAC	4 cut(s)	721, 736, 784, 837
Hpy188I	TCNGA	2 cut(s)	630, 1090
Hpy8I	GTNNAC	4 cut(s)	721, 736, 784, 837
HpyAV	CCTTC	5 cut(s)	226, 253, 487, 607, 1060
HpyCH4III	ACNGT	3 cut(s)	127, 652, 1018
HpyCH4IV	ACGT	3 cut(s)	446, 697, 1315
HpyCH4V	TGCA	9 cut(s)	17, 278, 542, 773, 900, 905, 949, 1176, 1227
HpyF10VI	GCNNNNNNNGC	4 cut(s)	955, 976, 1182, 1272
HpyF3I	CTNAG	2 cut(s)	1029, 1089
HpySE526I	ACGT	3 cut(s)	446, 697, 1315
Hsp92II	CATG	7 cut(s)	265, 529, 1001, 1010, 1121, 1127, 1247
Kpn2I	TCCGGA	1 cut(s)	659
Ksp22I	TGATCA	1 cut(s)	1003
Kzo9I	GATC	3 cut(s)	151, 1003, 1021
LmnI	GCTCC	2 cut(s)	760, 1069
Lsp1109I	GCAGC	1 cut(s)	1239
LweI	GCATC	2 cut(s)	403, 760
MaeII	ACGT	3 cut(s)	446, 697, 1315
MaeIII	GTNAC	3 cut(s)	51, 576, 861
MalI	GATC	3 cut(s)	153, 1005, 1023
MbiI	CCGCTC	1 cut(s)	715
MboI	GATC	3 cut(s)	151, 1003, 1021
MboII	GAAGA	2 cut(s)	703, 1139
MhlI	GDGCHC	2 cut(s)	765, 932
MroI	TCCGGA	1 cut(s)	659
MroXI	GAANNNNTTC	3 cut(s)	236, 497, 698
MslI	CAYNNNNRTG	2 cut(s)	768, 1122
MspI	CCGG	2 cut(s)	660, 787
MspR9I	CCNGG	2 cut(s)	788, 1187
Mva1269I	GAATGC	1 cut(s)	1190
MvaI	CCWGG	1 cut(s)	1187
MwoI	GCNNNNNNNGC	4 cut(s)	955, 976, 1182, 1272
NciI	CCSGG	1 cut(s)	788
NdeII	GATC	3 cut(s)	151, 1003, 1021
NlaIII	CATG	7 cut(s)	265, 529, 1001, 1010, 1121, 1127, 1247
NlaIV	GGNNCC	2 cut(s)	375, 639
NmuCI	GTSAC	1 cut(s)	861
PagI	TCATGA	2 cut(s)	1006, 1117
PctI	GAATGC	1 cut(s)	1190
PdmI	GAANNNNTTC	3 cut(s)	236, 497, 698
PkrI	GCNGC	1 cut(s)	1229
Ppu21I	YACGTR	1 cut(s)	1316
Psp124BI	GAGCTC	1 cut(s)	932
Psp1406I	AACGTT	1 cut(s)	697
Psp6I	CCWGG	1 cut(s)	1185
PspGI	CCWGG	1 cut(s)	1185
PspN4I	GGNNCC	2 cut(s)	375, 639
RsaI	GTAC	4 cut(s)	421, 1062, 1181, 1314
RsaNI	GTAC	4 cut(s)	420, 1061, 1180, 1313
RseI	CAYNNNNRTG	2 cut(s)	768, 1122
SacI	GAGCTC	1 cut(s)	932
SatI	GCNGC	1 cut(s)	1228
Sau3AI	GATC	3 cut(s)	151, 1003, 1021
ScaI	AGTACT	1 cut(s)	1062
ScrFI	CCNGG	2 cut(s)	788, 1187
SduI	GDGCHC	2 cut(s)	765, 932
SfaNI	GCATC	2 cut(s)	403, 760
SmiMI	CAYNNNNRTG	2 cut(s)	768, 1122
SmlI	CTYRAG	4 cut(s)	101, 221, 362, 482
SmoI	CTYRAG	4 cut(s)	101, 221, 362, 482
SsiI	CCGC	2 cut(s)	715, 1264
SstI	GAGCTC	1 cut(s)	932
StyD4I	CCNGG	2 cut(s)	786, 1185
TaaI	ACNGT	3 cut(s)	127, 652, 1018
TaiI	ACGT	3 cut(s)	449, 700, 1318
TaqI	TCGA	1 cut(s)	404
TatI	WGTACW	2 cut(s)	1060, 1179
TscAI	CASTG	2 cut(s)	907, 1178
TseFI	GTSAC	1 cut(s)	861
TseI	GCWGC	1 cut(s)	1227
Tsp45I	GTSAC	1 cut(s)	861
TspDTI	ATGAA	5 cut(s)	422, 704, 1070, 1140, 1260
TspGWI	ACGGA	1 cut(s)	1062
TspRI	CASTG	2 cut(s)	907, 1178
XapI	RAATTY	3 cut(s)	316, 1247, 1306
XcmI	CCANNNNNNNNNTGG	3 cut(s)	55, 316, 580
XmiI	GTMKAC	1 cut(s)	720
XmnI	GAANNNNTTC	3 cut(s)	236, 497, 698
ZrmI	AGTACT	1 cut(s)	1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.