Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009770

Physical Location & Seq

Genomic Coordinates Reverse (-)

4869754 .. 4870741

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCTGAATGTAGGGCATACTTTATGGAAGTGAAAGATACGTTTCATGATCAAATTGAAAAATATGATATGTTCAAGAATATTTTGTTAGATTTGAAGGCACGAAGGATTGGTCGTCATACTGCGTTTGCTCAATTGAAAGAGTTGTTCAAGGAGCACAACGAATTGATTATCGGATTTAACACCTTTTTGCCAACTGGATACAAGATAGCTCTTGATGATGACGTAGAAGACTCTTTTAGCTCGACTGCAAGAAACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009887 GO:0009889 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030539 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090596 GO:0090597 GO:0090598 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

F-box PAH Sin3_corepress Sin3a_C

Protein Analysis

87

Amino Acids

10.29

Weight (kDa)

5.53

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	20 - 64	2.7e-12	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24060 AT5G15030 AT5G15040 AT5G15040 AT5G15040
rosa_chinensis	RchiOBHm_Chr6g0269611
rosa_laevigata	RLG00000013843 RLG00000018235
rosa_multiflora	Rmu_sc0003863.1_g000005
rosa_roxburghii	Rroxscaffold_7G00198570
rosa_rugosa	Rorug06G0049100 Rorug06G0049200 Rorug06G0049200 Rorug06G0049300 Rorug06G0049400.1
rosa_samantha	Rh6AG169200 Rh6AG169300 Rh6BG174500 Rh6CG168800 Rh6DG160700
rosa_wichuraiana	Rw6G014560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	5 cut(s)	59, 76, 97, 139, 151
AluBI	AGCT	2 cut(s)	212, 243
AluI	AGCT	2 cut(s)	212, 243
Alw21I	GWGCWC	1 cut(s)	159
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	159
BciVI	GTATCC	1 cut(s)	194
BclI	TGATCA	1 cut(s)	49
BfuI	GTATCC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	202
BssMI	GATC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	237
BsuI	GTATCC	1 cut(s)	194
CciI	TCATGA	1 cut(s)	46
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	3 cut(s)	5, 212, 243
CviKI_1	RGCY	3 cut(s)	5, 212, 243
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
FaeI	CATG	1 cut(s)	50
FaiI	YATR	6 cut(s)	19, 26, 48, 66, 71, 120
FatI	CATG	1 cut(s)	46
FbaI	TGATCA	1 cut(s)	49
FspEI	CC	9 cut(s)	11, 83, 91, 96, 137, 159, 183, 199, 207
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	3 cut(s)	47, 76, 215
HpyAV	CCTTC	2 cut(s)	91, 99
HpyCH4IV	ACGT	2 cut(s)	41, 225
HpyCH4V	TGCA	1 cut(s)	251
HpySE526I	ACGT	2 cut(s)	41, 225
Hsp92II	CATG	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	1 cut(s)	183
MaeII	ACGT	2 cut(s)	41, 225
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	242
MfeI	CAATTG	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	54, 134, 164
MlyI	GAGTC	1 cut(s)	227
MseI	TTAA	1 cut(s)	180
MunI	CAATTG	1 cut(s)	134
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	50
PagI	TCATGA	1 cut(s)	46
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	5 cut(s)	44, 188, 214, 228, 245
SgeI	CNNG	8 cut(s)	59, 88, 114, 163, 210, 217, 227, 256
Sse9I	AATT	3 cut(s)	54, 134, 164
SspI	AATATT	1 cut(s)	82
TaiI	ACGT	2 cut(s)	44, 228
TaqI	TCGA	1 cut(s)	245
TasI	AATT	3 cut(s)	54, 134, 164
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TspDTI	ATGAA	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.