Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009770

Physical Location & Seq

Genomic Coordinates Forward (+)

6553524 .. 6554596

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0049200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAATGCACACATTCAGCGCCAAACTACTAACCAGCCATCAATAAATGCTACAACTGAAAGGTTGAATGATGCAAGGACATCAGTCGAAATCCAAGGATCTACTACAGGTCCAGAAAAAAAAGTGCGTGGAAAGACAAGAGGTTTAAATGCTGATAAGGTGCATGAGCAGCTTGGTACTAAAATACCTGTGACTTTCAAGAAAGAAAATGGCAGACCCACAGGTCCATATGCAGAAATGTTTGCTAATGAAATTGGATTCACCATTCGGAACCATGCACCTCTAAATGTGAAAAAATGGAAGGAAGTAAAACCAGAAGATAGGACAAGTTTGATCAAAAGAATAACAAAAACTTACGACATTGACATGTCTCTACCTTGGGTTAAGAGATATGTGAACAAATCTTTTGGAACAGTGTTTACTAACTTCTGTTATAAACTGAAGAAGCATTTTGAGCAATTCTCAACAAAAGAGGAAGCATTAGAAAATAAACCCAAGGATGTTAAAATTGAAGAGGATGGGCTTTTCTGTGTACTTATTTTTCTAGTGAAGATTTTCAGATTGTTTCAGAGAAAAATTCTATTAATAGGTCACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

199

Amino Acids

23.01

Weight (kDa)

9.82

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24060 AT5G15030 AT5G15040 AT5G15040 AT5G15040
rosa_chinensis	RchiOBHm_Chr6g0269611
rosa_laevigata	RLG00000013843 RLG00000018235
rosa_multiflora	Rmu_sc0003863.1_g000005
rosa_roxburghii	Rroxscaffold_7G00198570
rosa_rugosa	Rorug06G0049100 Rorug06G0049200 Rorug06G0049200 Rorug06G0049300 Rorug06G0049400.1
rosa_samantha	Rh6AG169200 Rh6AG169300 Rh6BG174500 Rh6CG168800 Rh6DG160700
rosa_wichuraiana	Rw6G014560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AasI	GACNNNNNNGTC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	576
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	178, 534
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	3 cut(s)	67, 199, 512
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	576
AseI	ATTAAT	1 cut(s)	584
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	110, 224
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	2 cut(s)	110, 224
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	2 cut(s)	46, 512
BclI	TGATCA	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	22
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme18I	GGWCC	2 cut(s)	110, 224
BmgT120I	GGNCC	2 cut(s)	110, 224
BmiI	GGNNCC	1 cut(s)	272
BmsI	GCATC	1 cut(s)	61
BoxI	GACNNNNGTC	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
BsaJI	CCNNGG	3 cut(s)	94, 377, 495
BseDI	CCNNGG	3 cut(s)	94, 377, 495
BseGI	GGATG	2 cut(s)	505, 523
BseXI	GCAGC	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	375
BsmI	GAATGC	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	98, 333
BspLI	GGNNCC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	94, 377, 495
BssMI	GATC	2 cut(s)	98, 333
BssT1I	CCWWGG	3 cut(s)	94, 377, 495
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	507
BstF5I	GGATG	2 cut(s)	505, 523
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	2 cut(s)	101, 336
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	2 cut(s)	98, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 454
BstNSI	RCATGY	1 cut(s)	370
BstPAI	GACNNNNGTC	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	505, 523
BtsIMutI	CAGTG	1 cut(s)	420
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	110, 224
Csp6I	GTAC	2 cut(s)	177, 533
CviAII	CATG	3 cut(s)	164, 275, 367
CviJI	RGCY	3 cut(s)	37, 172, 523
CviKI_1	RGCY	3 cut(s)	37, 172, 523
CviQI	GTAC	2 cut(s)	177, 533
DpnI	GATC	2 cut(s)	100, 335
DpnII	GATC	2 cut(s)	98, 333
DraI	TTTAAA	1 cut(s)	147
DrdI	GACNNNNNNGTC	1 cut(s)	222
DseDI	GACNNNNNNGTC	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	3 cut(s)	94, 377, 495
Eco47I	GGWCC	2 cut(s)	110, 224
Eco57I	CTGAAG	1 cut(s)	461
EcoT14I	CCWWGG	3 cut(s)	94, 377, 495
ErhI	CCWWGG	3 cut(s)	94, 377, 495
FaeI	CATG	3 cut(s)	167, 278, 370
FaiI	YATR	7 cut(s)	165, 229, 231, 276, 368, 393, 435
FatI	CATG	3 cut(s)	163, 274, 366
FauNDI	CATATG	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	2 cut(s)	512, 530
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	22
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	3 cut(s)	167, 278, 370
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	1 cut(s)	258
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	3 cut(s)	397, 420, 533
Hpy188I	TCNGA	3 cut(s)	270, 560, 570
Hpy188III	TCNNGA	2 cut(s)	113, 199
Hpy8I	GTNNAC	3 cut(s)	397, 420, 533
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	5 cut(s)	8, 74, 163, 233, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 454
HpySE526I	ACGT	1 cut(s)	594
Hsp92II	CATG	3 cut(s)	167, 278, 370
HspAI	GCGC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	98, 333
LpnPI	CCDG	6 cut(s)	47, 93, 126, 201, 207, 327
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	2 cut(s)	190, 590
MalI	GATC	2 cut(s)	100, 335
MboI	GATC	2 cut(s)	98, 333
MboII	GAAGA	4 cut(s)	329, 454, 524, 562
MflI	RGATCY	1 cut(s)	98
MluCI	AATT	4 cut(s)	252, 458, 507, 576
MnlI	CCTC	4 cut(s)	134, 291, 466, 508
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	4 cut(s)	146, 384, 504, 584
MslI	CAYNNNNRTG	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	169, 454
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	2 cut(s)	98, 333
NlaIII	CATG	3 cut(s)	167, 278, 370
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	2 cut(s)	190, 590
NspI	RCATGY	1 cut(s)	370
PciI	ACATGT	1 cut(s)	366
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	258
PkrI	GCNGC	1 cut(s)	171
PscI	ACATGT	1 cut(s)	366
PshAI	GACNNNNGTC	1 cut(s)	83
PshBI	ATTAAT	1 cut(s)	584
PsiI	TTATAA	1 cut(s)	435
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	2 cut(s)	110, 224
PsrI	GAACNNNNNNTAC	2 cut(s)	403, 435
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	2 cut(s)	178, 534
RsaNI	GTAC	2 cut(s)	177, 533
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	4 cut(s)	146, 384, 504, 584
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	2 cut(s)	98, 333
Sau96I	GGNCC	2 cut(s)	110, 224
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	2 cut(s)	110, 224
SmiMI	CAYNNNNRTG	1 cut(s)	365
Sse9I	AATT	4 cut(s)	252, 458, 507, 576
SspMI	CTAG	1 cut(s)	545
StyI	CCWWGG	3 cut(s)	94, 377, 495
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	1 cut(s)	87
TasI	AATT	4 cut(s)	252, 458, 507, 576
TatI	WGTACW	1 cut(s)	532
TfiI	GAWTC	1 cut(s)	258
Tru1I	TTAA	4 cut(s)	146, 384, 504, 584
Tru9I	TTAA	4 cut(s)	146, 384, 504, 584
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	2 cut(s)	190, 590
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	2 cut(s)	190, 590
TspDTI	ATGAA	2 cut(s)	17, 264
TspRI	CASTG	1 cut(s)	420
VpaK11BI	GGWCC	2 cut(s)	110, 224
VspI	ATTAAT	1 cut(s)	584
XapI	RAATTY	1 cut(s)	576
XceI	RCATGY	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.