Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009770

Physical Location & Seq

Genomic Coordinates Forward (+)

6562868 .. 6563617

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0049300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCATCCGGGAGTAGTGCTAACATGCTTCGCAGGAAGAGCAGTACTAGGTGGATTCCTACTACAGATCATATAAGAATCCTCAAGGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTTTCGAGCTGAAGTGGTACGGAGAGATCGAGTTCAAGAACGTCTATTATTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCCGTTGGTGTGATGATTACTTTTAACGGGCAGATGGGGAACTATGGCGGTTATGGATCTGTGAACATGGAGAAGAGTGCTAGGGATTGTTCAATCTCAGCTGGAAGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGTGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCTGATGAAGGTGGCGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTTAGCCTTTCCTGTGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

249

Amino Acids

27.83

Weight (kDa)

6.61

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 91	1.3e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24060 AT5G15030 AT5G15040 AT5G15040 AT5G15040
rosa_chinensis	RchiOBHm_Chr6g0269611
rosa_laevigata	RLG00000013843 RLG00000018235
rosa_multiflora	Rmu_sc0003863.1_g000005
rosa_roxburghii	Rroxscaffold_7G00198570
rosa_rugosa	Rorug06G0049100 Rorug06G0049200 Rorug06G0049200 Rorug06G0049300 Rorug06G0049400.1
rosa_samantha	Rh6AG169200 Rh6AG169300 Rh6BG174500 Rh6CG168800 Rh6DG160700
rosa_wichuraiana	Rw6G014560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
Acc36I	ACCTGC	2 cut(s)	166, 400
AccIII	TCCGGA	1 cut(s)	738
AciI	CCGC	3 cut(s)	453, 666, 745
AclWI	GGATC	4 cut(s)	194, 369, 388, 469
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	2 cut(s)	91, 209
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	226, 498, 593
AhlI	ACTAGT	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	582
AleI	CACNNNNGTG	1 cut(s)	675
AluBI	AGCT	5 cut(s)	136, 199, 506, 700, 725
AluI	AGCT	5 cut(s)	136, 199, 506, 700, 725
AlwI	GGATC	4 cut(s)	194, 369, 388, 469
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	738
Asp700I	GAANNNNTTC	1 cut(s)	520
AspS9I	GGNCC	2 cut(s)	159, 282
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	341, 572, 632
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	159, 282
BaeGI	GKGCMC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	650
BccI	CCATC	2 cut(s)	26, 433
BciT130I	CCWGG	1 cut(s)	584
BcnI	CCSGG	1 cut(s)	55
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	3 cut(s)	93, 486, 519
BfmI	CTRYAG	2 cut(s)	108, 168
BfuAI	ACCTGC	2 cut(s)	166, 400
BisI	GCNGC	1 cut(s)	745
BlpI	GCTNAGC	1 cut(s)	701
BlsI	GCNGC	1 cut(s)	746
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	2 cut(s)	55, 584
Bme18I	GGWCC	2 cut(s)	159, 282
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	2 cut(s)	159, 282
BmiI	GGNNCC	3 cut(s)	6, 161, 743
BmrFI	CCNGG	2 cut(s)	55, 584
BmsI	GCATC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	650
Bpu1102I	GCTNAGC	1 cut(s)	701
BpuEI	CTTGAG	2 cut(s)	113, 716
BpuMI	CCSGG	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	738
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
BseAI	TCCGGA	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	3 cut(s)	37, 50, 298
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMII	CTCAG	1 cut(s)	516
BseRI	GAGGAG	1 cut(s)	585
BseSI	GKGCMC	1 cut(s)	306
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	372
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	54, 739
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmFI	GGGAC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	262, 306
Bsp13I	TCCGGA	1 cut(s)	738
Bsp143I	GATC	8 cut(s)	112, 186, 216, 314, 361, 380, 461, 577
Bsp1720I	GCTNAGC	1 cut(s)	701
BspACI	CCGC	3 cut(s)	453, 666, 745
BspCNI	CTCAG	1 cut(s)	515
BspEI	TCCGGA	1 cut(s)	738
BspLI	GGNNCC	3 cut(s)	6, 161, 743
BspMI	ACCTGC	2 cut(s)	166, 400
BspPI	GGATC	4 cut(s)	194, 369, 388, 469
BspQI	GCTCTTC	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	8 cut(s)	112, 186, 216, 314, 361, 380, 461, 577
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	2 cut(s)	606, 674
Bst6I	CTCTTC	3 cut(s)	77, 272, 473
BstDEI	CTNAG	2 cut(s)	502, 701
BstF5I	GGATG	3 cut(s)	37, 50, 298
BstKTI	GATC	8 cut(s)	115, 189, 219, 317, 364, 383, 464, 580
BstMBI	GATC	8 cut(s)	112, 186, 216, 314, 361, 380, 461, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	53, 582
BstSFI	CTRYAG	2 cut(s)	108, 168
BstSLI	GKGCMC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	650
BstX2I	RGATCY	3 cut(s)	186, 380, 461
BstYI	RGATCY	3 cut(s)	186, 380, 461
BtsCI	GGATG	3 cut(s)	37, 50, 298
BtsIMutI	CAGTG	1 cut(s)	602
BveI	ACCTGC	2 cut(s)	166, 400
Cfr13I	GGNCC	2 cut(s)	159, 282
Csp6I	GTAC	2 cut(s)	90, 208
CviAII	CATG	9 cut(s)	70, 299, 307, 356, 472, 538, 559, 617, 640
CviQI	GTAC	2 cut(s)	90, 208
DdeI	CTNAG	2 cut(s)	502, 701
DpnI	GATC	8 cut(s)	114, 188, 218, 316, 363, 382, 463, 579
DpnII	GATC	8 cut(s)	112, 186, 216, 314, 361, 380, 461, 577
Eam1104I	CTCTTC	3 cut(s)	77, 272, 473
EarI	CTCTTC	3 cut(s)	77, 272, 473
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	159, 282
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	262
FaeI	CATG	9 cut(s)	73, 302, 310, 359, 475, 541, 562, 620, 643
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	9 cut(s)	69, 298, 306, 355, 471, 537, 558, 616, 639
Fnu4HI	GCNGC	1 cut(s)	745
FokI	GGATG	3 cut(s)	37, 44, 305
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	745
FspBI	CTAG	3 cut(s)	93, 486, 519
GluI	GCNGC	1 cut(s)	745
GsaI	CCCAGC	1 cut(s)	19
HapII	CCGG	2 cut(s)	54, 739
Hin1II	CATG	9 cut(s)	73, 302, 310, 359, 475, 541, 562, 620, 643
HinfI	GANTC	2 cut(s)	100, 123
HpaII	CCGG	2 cut(s)	54, 739
HphI	GGTGA	3 cut(s)	341, 572, 632
Hpy166II	GTNNAC	3 cut(s)	250, 285, 469
Hpy188I	TCNGA	3 cut(s)	183, 292, 655
Hpy188III	TCNNGA	4 cut(s)	226, 247, 263, 739
Hpy8I	GTNNAC	3 cut(s)	250, 285, 469
HpyAV	CCTTC	2 cut(s)	504, 653
HpyCH4III	ACNGT	2 cut(s)	606, 674
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	310, 389, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	2 cut(s)	502, 701
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	9 cut(s)	73, 302, 310, 359, 475, 541, 562, 620, 643
Kpn2I	TCCGGA	1 cut(s)	738
Kzo9I	GATC	8 cut(s)	112, 186, 216, 314, 361, 380, 461, 577
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	2 cut(s)	133, 741
LweI	GCATC	1 cut(s)	59
MaeI	CTAG	3 cut(s)	93, 486, 519
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	340, 668
MalI	GATC	8 cut(s)	114, 188, 218, 316, 363, 382, 463, 579
MboI	GATC	8 cut(s)	112, 186, 216, 314, 361, 380, 461, 577
MboII	GAAGA	8 cut(s)	94, 286, 289, 375, 396, 490, 587, 655
MfeI	CAATTG	1 cut(s)	346
MflI	RGATCY	3 cut(s)	186, 380, 461
MhlI	GDGCHC	2 cut(s)	262, 306
MluCI	AATT	1 cut(s)	346
MnlI	CCTC	9 cut(s)	22, 29, 137, 177, 273, 352, 563, 616, 709
MroI	TCCGGA	1 cut(s)	738
MroXI	GAANNNNTTC	1 cut(s)	520
MseI	TTAA	2 cut(s)	372, 429
MslI	CAYNNNNRTG	1 cut(s)	675
MspA1I	CMGCKG	2 cut(s)	506, 747
MspI	CCGG	2 cut(s)	54, 739
MspR9I	CCNGG	2 cut(s)	55, 584
MunI	CAATTG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	1 cut(s)	84
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	8 cut(s)	112, 186, 216, 314, 361, 380, 461, 577
NlaIII	CATG	9 cut(s)	73, 302, 310, 359, 475, 541, 562, 620, 643
NlaIV	GGNNCC	3 cut(s)	6, 161, 743
NmuCI	GTSAC	1 cut(s)	668
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	675
PaqCI	CACCTGC	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	520
PfeI	GAWTC	2 cut(s)	100, 123
PfoI	TCCNGGA	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	746
PpuMI	RGGWCCY	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	3 cut(s)	6, 161, 743
PspPI	GGNCC	2 cut(s)	159, 282
PspPPI	RGGWCCY	1 cut(s)	159
PsrI	GAACNNNNNNTAC	2 cut(s)	508, 540
PsuI	RGATCY	3 cut(s)	186, 380, 461
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	2 cut(s)	91, 209
RsaNI	GTAC	2 cut(s)	90, 208
RseI	CAYNNNNRTG	1 cut(s)	675
SapI	GCTCTTC	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	372, 429
SatI	GCNGC	1 cut(s)	745
Sau3AI	GATC	8 cut(s)	112, 186, 216, 314, 361, 380, 461, 577
Sau96I	GGNCC	2 cut(s)	159, 282
ScaI	AGTACT	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	55, 584
SduI	GDGCHC	2 cut(s)	262, 306
SfaNI	GCATC	1 cut(s)	59
SfcI	CTRYAG	2 cut(s)	108, 168
SinI	GGWCC	2 cut(s)	159, 282
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	2 cut(s)	128, 695
SmoI	CTYRAG	2 cut(s)	128, 695
SpeI	ACTAGT	1 cut(s)	518
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	3 cut(s)	453, 666, 745
SspMI	CTAG	3 cut(s)	93, 486, 519
StyD4I	CCNGG	2 cut(s)	53, 582
TaaI	ACNGT	2 cut(s)	606, 674
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	195, 219
TasI	AATT	1 cut(s)	346
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	1 cut(s)	747
TfiI	GAWTC	2 cut(s)	100, 123
Tru1I	TTAA	2 cut(s)	372, 429
Tru9I	TTAA	2 cut(s)	372, 429
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	1 cut(s)	668
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	5 cut(s)	287, 547, 554, 656, 672
TspGWI	ACGGA	2 cut(s)	225, 397
TspRI	CASTG	1 cut(s)	609
VpaK11BI	GGWCC	2 cut(s)	159, 282
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	520
XspI	CTAG	3 cut(s)	93, 486, 519
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.