Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009770

Physical Location & Seq

Genomic Coordinates Reverse (-)

27346080 .. 27350247

Gene Structure 4168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018235

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGCCACCCCAGCTCCAAGTACAAGGAGGAGGAGGCGCGGCAGCTAGGTGGAGTAATAGCTAGCACTGGAGTAGGCGCCTCACAGAAATCGTCAATGAATGATGCTTGTACATACATCAAAGAAGTGGAGGACGCGTTTCAAGACCAAAGAGAAAAGTTTGATATGTTTCTTGAGGTCATGAAGGATTTCATAGTTCAAAGAACTAGCATGTCAGGTGTCATTGCAAGAGTAAAGGAATTGTTTAAAGGGCATACCAAGTTACTTTTGGGGTTTAATACATTCTTGCCAAAGGGTTTTGAGATACCTCTTCAGGAAGTGGAACCAATAAAGACAGTTTCACAGAAATTGTCAATGAATGATGCTTGTACATATATCAAAGAAGTGGAAGACACGTTTCAAAACCAAAGAGAAAAGTATGATATGTTTCTTGAGGTCTTGAAGGATTATATGGCTCAAAGTTTATCTCATTATGTGAACTTTCAGGTTGCTTCTCTATTTGATGACCAACCCGATTTGCTGGATGAGTTCACTAGATTTTTACCAGATATGTCGGCAACAACTTCAACTCATCAGGGGCAATTTGGTCACAGTGCATATCCCTATTTTAATGAGCAGACCTCTGCTACACTCACTTTGCGACAAATGCCTATTGACAAGGTAATTACATTGTACTTTATCTTATCTGTTTCTGTTTTATTAGTCATCTTTAATGCTCATTTTATGTATCACCAACTTGATAATGGTGGCATGTTATCCCTTGTATGTAAACTTATCTTGGTTTTGATTTTTGGAAATTTTAGGTTTCAGCTAGATATGTTGTTGGAGTCAGCGAGCTCAACTTCTAAGCGAGCAGAGGAATTGTTGAACTGCATGAATGAAAATAAACTCGGTATCAAAACTCAAATTCATATCGAAGACCACTTTACTGGTTTGTCTCAAAACTTGAGGTGCATTGAACGTTTATATAGTGACCATGGTCTTGATGTGATGGACATACTGCAGAAAAGTCCAACACTCGCTCTGCCTGTTATATTAACCCCGCCTGAAACAGAAACAAGAGGAATGGACAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

360

Amino Acids

40.9

Weight (kDa)

5.26

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	52 - 96	4.2e-14	Paired amphipathic helix repeat
PAH	PF02671	138 - 181	3e-10	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24060 AT5G15030 AT5G15040 AT5G15040 AT5G15040
rosa_chinensis	RchiOBHm_Chr6g0269611
rosa_laevigata	RLG00000013843 RLG00000018235
rosa_multiflora	Rmu_sc0003863.1_g000005
rosa_roxburghii	Rroxscaffold_7G00198570
rosa_rugosa	Rorug06G0049100 Rorug06G0049200 Rorug06G0049200 Rorug06G0049300 Rorug06G0049400.1
rosa_samantha	Rh6AG169200 Rh6AG169300 Rh6BG174500 Rh6CG168800 Rh6DG160700
rosa_wichuraiana	Rw6G014560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccII	CGCG	2 cut(s)	40, 137
AciI	CCGC	2 cut(s)	40, 1043
AclI	AACGTT	1 cut(s)	961
AcsI	RAATTY	2 cut(s)	796, 906
AcuI	CTGAAG	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	4 cut(s)	23, 112, 370, 674
AflIII	ACRYGT	2 cut(s)	135, 393
AgsI	TTSAA	7 cut(s)	143, 200, 401, 442, 567, 868, 959
AluBI	AGCT	5 cut(s)	15, 46, 62, 811, 837
AluI	AGCT	5 cut(s)	15, 46, 62, 811, 837
Alw21I	GWGCWC	1 cut(s)	839
Alw26I	GTCTC	1 cut(s)	942
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	2 cut(s)	796, 906
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	2 cut(s)	40, 80
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	722
AsuNHI	GCTAGC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	839
BbsI	GAAGAC	2 cut(s)	396, 924
Bbv12I	GWGCWC	1 cut(s)	839
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	985
BcoDI	GTCTC	1 cut(s)	942
BfaI	CTAG	5 cut(s)	47, 63, 207, 534, 812
BfmI	CTRYAG	1 cut(s)	1001
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	2 cut(s)	41, 44
BlsI	GCNGC	2 cut(s)	42, 45
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	79, 324
BmsI	GCATC	2 cut(s)	94, 352
BmtI	GCTAGC	1 cut(s)	66
BoxI	GACNNNNGTC	1 cut(s)	978
BpiI	GAAGAC	2 cut(s)	396, 924
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	3 cut(s)	194, 452, 967
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	976
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 122, 152
Bse1I	ACTGG	2 cut(s)	73, 934
Bse3DI	GCAATG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	976
BseGI	GGATG	1 cut(s)	529
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	73, 934
BseRI	GAGGAG	2 cut(s)	44, 47
BseXI	GCAGC	1 cut(s)	55
BseYI	CCCAGC	1 cut(s)	11
Bsh1236I	CGCG	2 cut(s)	40, 137
BshFI	GGCC	1 cut(s)	6
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	839
BsmAI	GTCTC	1 cut(s)	942
BsnI	GGCC	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	839
Bsp1407I	TGTACA	2 cut(s)	110, 368
Bsp19I	CCATGG	1 cut(s)	976
BspACI	CCGC	2 cut(s)	40, 1043
BspANI	GGCC	1 cut(s)	6
BspFNI	CGCG	2 cut(s)	40, 137
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	79, 324
BspMAI	CTGCAG	1 cut(s)	1005
BspOI	GCTAGC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	222
BsrGI	TGTACA	2 cut(s)	110, 368
BsrI	ACTGG	2 cut(s)	73, 934
BssECI	CCNNGG	1 cut(s)	976
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	976
Bst4CI	ACNGT	2 cut(s)	337, 593
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	78
BstAUI	TGTACA	2 cut(s)	110, 368
BstC8I	GCNNGC	3 cut(s)	64, 835, 852
BstDEI	CTNAG	1 cut(s)	846
BstDSI	CCRYGG	1 cut(s)	976
BstF5I	GGATG	1 cut(s)	529
BstFNI	CGCG	2 cut(s)	40, 137
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	2 cut(s)	40, 80
BstMAI	GTCTC	1 cut(s)	942
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 646
BstNSI	RCATGY	2 cut(s)	214, 754
BstPAI	GACNNNNGTC	1 cut(s)	978
BstSFI	CTRYAG	1 cut(s)	1001
BstUI	CGCG	2 cut(s)	40, 137
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	2 cut(s)	396, 924
BstXI	CCANNNNNNTGG	1 cut(s)	929
BsuRI	GGCC	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	976
BtsCI	GGATG	1 cut(s)	529
BtsIMutI	CAGTG	2 cut(s)	66, 598
Cac8I	GCNNGC	3 cut(s)	64, 835, 852
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	2 cut(s)	40, 80
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	4 cut(s)	22, 111, 369, 673
CviAII	CATG	5 cut(s)	181, 211, 751, 874, 977
CviJI	RGCY	7 cut(s)	6, 15, 46, 62, 455, 811, 837
CviKI_1	RGCY	7 cut(s)	6, 15, 46, 62, 455, 811, 837
CviQI	GTAC	4 cut(s)	22, 111, 369, 673
DdeI	CTNAG	1 cut(s)	846
DinI	GGCGCC	1 cut(s)	79
DraI	TTTAAA	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	837
Eco130I	CCWWGG	1 cut(s)	976
Eco24I	GRGCYC	1 cut(s)	839
Eco53kI	GAGCTC	1 cut(s)	837
Eco57I	CTGAAG	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	837
EcoT14I	CCWWGG	1 cut(s)	976
EcoT38I	GRGCYC	1 cut(s)	839
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	976
FaeI	CATG	5 cut(s)	184, 214, 754, 877, 980
FatI	CATG	5 cut(s)	180, 210, 750, 873, 976
FauI	CCCGC	1 cut(s)	1050
Fnu4HI	GCNGC	2 cut(s)	41, 44
FokI	GGATG	1 cut(s)	536
FriOI	GRGCYC	1 cut(s)	839
Fsp4HI	GCNGC	2 cut(s)	41, 44
FspBI	CTAG	5 cut(s)	47, 63, 207, 534, 812
GlaI	GCGC	2 cut(s)	39, 79
GluI	GCNGC	2 cut(s)	41, 44
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	6
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	2 cut(s)	40, 80
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	5 cut(s)	184, 214, 754, 877, 980
Hin6I	GCGC	2 cut(s)	38, 78
HinP1I	GCGC	2 cut(s)	38, 78
HinfI	GANTC	1 cut(s)	827
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	3 cut(s)	478, 531, 770
Hpy188III	TCNNGA	7 cut(s)	143, 173, 181, 314, 431, 439, 983
Hpy8I	GTNNAC	3 cut(s)	478, 531, 770
HpyAV	CCTTC	2 cut(s)	178, 436
HpyCH4III	ACNGT	2 cut(s)	337, 593
HpyCH4IV	ACGT	2 cut(s)	395, 961
HpyCH4V	TGCA	5 cut(s)	227, 596, 873, 954, 1003
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 646
HpyF3I	CTNAG	1 cut(s)	846
HpySE526I	ACGT	2 cut(s)	395, 961
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	5 cut(s)	184, 214, 754, 877, 980
HspAI	GCGC	2 cut(s)	38, 78
KasI	GGCGCC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	2 cut(s)	94, 352
MaeI	CTAG	5 cut(s)	47, 63, 207, 534, 812
MaeII	ACGT	2 cut(s)	395, 961
MaeIII	GTNAC	3 cut(s)	261, 587, 971
MboII	GAAGA	3 cut(s)	302, 401, 929
MhlI	GDGCHC	1 cut(s)	839
MluCI	AATT	7 cut(s)	239, 347, 581, 663, 796, 860, 906
MluI	ACGCGT	1 cut(s)	135
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	836
MmeI	TCCRAC	2 cut(s)	804, 1037
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	5 cut(s)	246, 276, 609, 711, 1037
MvnI	CGCG	2 cut(s)	40, 137
MwoI	GCNNNNNNNGC	2 cut(s)	12, 646
NarI	GGCGCC	1 cut(s)	78
NcoI	CCATGG	1 cut(s)	976
NheI	GCTAGC	1 cut(s)	62
NlaIII	CATG	5 cut(s)	184, 214, 754, 877, 980
NlaIV	GGNNCC	2 cut(s)	79, 324
NmuCI	GTSAC	2 cut(s)	587, 971
NspI	RCATGY	2 cut(s)	214, 754
PagI	TCATGA	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	42, 45
PleI	GAGTC	1 cut(s)	835
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	835
PshAI	GACNNNNGTC	1 cut(s)	978
Psp124BI	GAGCTC	1 cut(s)	839
Psp1406I	AACGTT	1 cut(s)	961
PspFI	CCCAGC	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	79, 324
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	1005
RsaI	GTAC	4 cut(s)	23, 112, 370, 674
RsaNI	GTAC	4 cut(s)	22, 111, 369, 673
SacI	GAGCTC	1 cut(s)	839
SaqAI	TTAA	5 cut(s)	246, 276, 609, 711, 1037
SatI	GCNGC	2 cut(s)	41, 44
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	836
SduI	GDGCHC	1 cut(s)	839
SfaNI	GCATC	2 cut(s)	94, 352
SfcI	CTRYAG	1 cut(s)	1001
SfoI	GGCGCC	1 cut(s)	79
SmlI	CTYRAG	3 cut(s)	173, 431, 946
SmoI	CTYRAG	3 cut(s)	173, 431, 946
Sse9I	AATT	7 cut(s)	239, 347, 581, 663, 796, 860, 906
SsiI	CCGC	2 cut(s)	40, 1043
SspDI	GGCGCC	1 cut(s)	77
SspMI	CTAG	5 cut(s)	47, 63, 207, 534, 812
SstI	GAGCTC	1 cut(s)	839
StyI	CCWWGG	1 cut(s)	976
TaaI	ACNGT	2 cut(s)	337, 593
TaiI	ACGT	2 cut(s)	398, 964
TaqI	TCGA	1 cut(s)	915
TasI	AATT	7 cut(s)	239, 347, 581, 663, 796, 860, 906
TatI	WGTACW	4 cut(s)	21, 110, 368, 672
TauI	GCSGC	1 cut(s)	43
Tru1I	TTAA	5 cut(s)	246, 276, 609, 711, 1037
Tru9I	TTAA	5 cut(s)	246, 276, 609, 711, 1037
TscAI	CASTG	2 cut(s)	73, 598
TseFI	GTSAC	2 cut(s)	587, 971
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	2 cut(s)	587, 971
TspDTI	ATGAA	7 cut(s)	113, 181, 197, 371, 890, 894, 899
TspRI	CASTG	2 cut(s)	73, 598
XapI	RAATTY	2 cut(s)	796, 906
XceI	RCATGY	2 cut(s)	214, 754
XcmI	CCANNNNNNNNNTGG	2 cut(s)	265, 740
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	5 cut(s)	47, 63, 207, 534, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.