helix loop helix domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G27660 |
| fragaria_vesca | FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 |
| malus_domestica | MD08G1026300.v1.1 MD15G1023100.v1.1 |
| prunus_persica | Prupe.1G375000_v2.0.a1 Prupe.1G375000_v2.0.a1 |
| pyrus_communis | pycom08g02040 |
| rosa_chinensis | RchiOBHm_Chr6g0301601 |
| rosa_laevigata | RLG00000011240 |
| rosa_multiflora | Rmu_ssc0000452.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00166620 |
| rosa_rugosa | Rorug06G0306800 Rorug06G0306900 Rorug06G0307000 Rorug06G0307100 Rorug06G0307100 |
| rosa_samantha | Rh6AG420000 Rh6BG426100 Rh6CG433000 Rh6DG419400 |
| rosa_wichuraiana | Rw6G036310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 174 |
| Acc36I | ACCTGC | 1 cut(s) | 685 |
| AccII | CGCG | 2 cut(s) | 961, 963 |
| AciI | CCGC | 3 cut(s) | 959, 1308, 1353 |
| AclWI | GGATC | 1 cut(s) | 265 |
| AcoI | YGGCCR | 1 cut(s) | 1328 |
| AcsI | RAATTY | 1 cut(s) | 1106 |
| AcuI | CTGAAG | 1 cut(s) | 574 |
| AfaI | GTAC | 1 cut(s) | 1318 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 123, 515, 797, 1346 |
| AflIII | ACRYGT | 1 cut(s) | 411 |
| AgsI | TTSAA | 5 cut(s) | 29, 148, 445, 719, 994 |
| AjnI | CCWGG | 2 cut(s) | 130, 1339 |
| AluBI | AGCT | 9 cut(s) | 25, 43, 107, 159, 200, 358, 478, 1031, 1186 |
| AluI | AGCT | 9 cut(s) | 25, 43, 107, 159, 200, 358, 478, 1031, 1186 |
| Alw21I | GWGCWC | 1 cut(s) | 202 |
| Alw26I | GTCTC | 7 cut(s) | 248, 513, 573, 1011, 1121, 1195, 1214 |
| AlwI | GGATC | 1 cut(s) | 265 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1076 |
| AoxI | GGCC | 3 cut(s) | 299, 799, 1328 |
| ApeKI | GCWGC | 4 cut(s) | 531, 823, 1028, 1036 |
| ApoI | RAATTY | 1 cut(s) | 1106 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 336 |
| AspLEI | GCGC | 1 cut(s) | 963 |
| AsuC2I | CCSGG | 1 cut(s) | 1170 |
| AsuHPI | GGTGA | 3 cut(s) | 552, 1009, 1041 |
| BalI | TGGCCA | 1 cut(s) | 1330 |
| BanII | GRGCYC | 2 cut(s) | 131, 202 |
| BbsI | GAAGAC | 3 cut(s) | 45, 489, 1067 |
| Bbv12I | GWGCWC | 1 cut(s) | 202 |
| BbvI | GCAGC | 4 cut(s) | 543, 835, 1040, 1048 |
| BccI | CCATC | 7 cut(s) | 27, 126, 390, 698, 916, 1283, 1292 |
| BceAI | ACGGC | 2 cut(s) | 1224, 1243 |
| BciT130I | CCWGG | 2 cut(s) | 132, 1341 |
| BciVI | GTATCC | 1 cut(s) | 1091 |
| BcnI | CCSGG | 1 cut(s) | 1170 |
| BcoDI | GTCTC | 7 cut(s) | 248, 513, 573, 1011, 1121, 1195, 1214 |
| BfaI | CTAG | 2 cut(s) | 1158, 1253 |
| BfmI | CTRYAG | 3 cut(s) | 821, 1034, 1112 |
| BfuAI | ACCTGC | 1 cut(s) | 685 |
| BfuI | GTATCC | 1 cut(s) | 1091 |
| BglII | AGATCT | 1 cut(s) | 1228 |
| BisI | GCNGC | 4 cut(s) | 532, 824, 1029, 1037 |
| BlsI | GCNGC | 4 cut(s) | 533, 825, 1030, 1038 |
| Bme1390I | CCNGG | 3 cut(s) | 132, 1170, 1341 |
| BmiI | GGNNCC | 2 cut(s) | 128, 1163 |
| BmrFI | CCNGG | 3 cut(s) | 132, 1170, 1341 |
| BmsI | GCATC | 3 cut(s) | 261, 1082, 1163 |
| BpiI | GAAGAC | 3 cut(s) | 45, 489, 1067 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 347, 379, 619, 651 |
| BpmI | CTGGAG | 1 cut(s) | 232 |
| BpuEI | CTTGAG | 5 cut(s) | 181, 326, 470, 655, 735 |
| BpuMI | CCSGG | 1 cut(s) | 1170 |
| BsaI | GGTCTC | 1 cut(s) | 1195 |
| BsaJI | CCNNGG | 2 cut(s) | 130, 1240 |
| BsaWI | WCCGGW | 1 cut(s) | 1283 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 248, 278, 1296, 1326 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 123, 515, 797, 1346 |
| Bse1I | ACTGG | 2 cut(s) | 425, 1324 |
| Bse3DI | GCAATG | 1 cut(s) | 886 |
| BseBI | CCWGG | 2 cut(s) | 132, 1341 |
| BseDI | CCNNGG | 2 cut(s) | 130, 1240 |
| BseGI | GGATG | 4 cut(s) | 252, 777, 1216, 1303 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 123, 515, 797, 1346 |
| BseMI | GCAATG | 1 cut(s) | 886 |
| BseMII | CTCAG | 3 cut(s) | 390, 462, 584 |
| BseNI | ACTGG | 2 cut(s) | 425, 1324 |
| BseRI | GAGGAG | 2 cut(s) | 967, 1317 |
| BseXI | GCAGC | 4 cut(s) | 543, 835, 1040, 1048 |
| BseYI | CCCAGC | 1 cut(s) | 1182 |
| Bsh1236I | CGCG | 2 cut(s) | 961, 963 |
| BshFI | GGCC | 3 cut(s) | 301, 801, 1330 |
| BsiHKAI | GWGCWC | 1 cut(s) | 202 |
| BsiSI | CCGG | 2 cut(s) | 1170, 1284 |
| BslFI | GGGAC | 1 cut(s) | 1124 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 123, 515, 797, 1346 |
| BsmAI | GTCTC | 7 cut(s) | 248, 513, 573, 1011, 1121, 1195, 1214 |
| BsmBI | CGTCTC | 2 cut(s) | 573, 1214 |
| BsmFI | GGGAC | 1 cut(s) | 1124 |
| BsnI | GGCC | 3 cut(s) | 301, 801, 1330 |
| Bso31I | GGTCTC | 1 cut(s) | 1195 |
| Bsp1286I | GDGCHC | 2 cut(s) | 131, 202 |
| Bsp143I | GATC | 7 cut(s) | 31, 270, 345, 447, 510, 1122, 1228 |
| BspACI | CCGC | 3 cut(s) | 959, 1308, 1353 |
| BspANI | GGCC | 3 cut(s) | 301, 801, 1330 |
| BspCNI | CTCAG | 3 cut(s) | 389, 463, 583 |
| BspFNI | CGCG | 2 cut(s) | 961, 963 |
| BspHI | TCATGA | 2 cut(s) | 304, 328 |
| BspLI | GGNNCC | 2 cut(s) | 128, 1163 |
| BspMAI | CTGCAG | 2 cut(s) | 825, 1038 |
| BspMI | ACCTGC | 1 cut(s) | 685 |
| BspPI | GGATC | 1 cut(s) | 265 |
| BspQI | GCTCTTC | 1 cut(s) | 348 |
| BspTNI | GGTCTC | 1 cut(s) | 1195 |
| BsrDI | GCAATG | 1 cut(s) | 886 |
| BsrI | ACTGG | 2 cut(s) | 425, 1324 |
| BssECI | CCNNGG | 2 cut(s) | 130, 1240 |
| BssMI | GATC | 7 cut(s) | 31, 270, 345, 447, 510, 1122, 1228 |
| Bst2UI | CCWGG | 2 cut(s) | 132, 1341 |
| Bst6I | CTCTTC | 5 cut(s) | 348, 547, 562, 899, 1212 |
| BstDEI | CTNAG | 6 cut(s) | 73, 376, 471, 570, 1232, 1359 |
| BstDSI | CCRYGG | 1 cut(s) | 1240 |
| BstF5I | GGATG | 4 cut(s) | 252, 777, 1216, 1303 |
| BstFNI | CGCG | 2 cut(s) | 961, 963 |
| BstHHI | GCGC | 1 cut(s) | 963 |
| BstKTI | GATC | 7 cut(s) | 34, 273, 348, 450, 513, 1125, 1231 |
| BstMAI | GTCTC | 7 cut(s) | 248, 513, 573, 1011, 1121, 1195, 1214 |
| BstMBI | GATC | 7 cut(s) | 31, 270, 345, 447, 510, 1122, 1228 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 113, 783, 932, 981 |
| BstNI | CCWGG | 2 cut(s) | 132, 1341 |
| BstNSI | RCATGY | 2 cut(s) | 415, 694 |
| BstSCI | CCNGG | 3 cut(s) | 130, 1168, 1339 |
| BstSFI | CTRYAG | 3 cut(s) | 821, 1034, 1112 |
| BstUI | CGCG | 2 cut(s) | 961, 963 |
| BstV1I | GCAGC | 4 cut(s) | 543, 835, 1040, 1048 |
| BstV2I | GAAGAC | 3 cut(s) | 45, 489, 1067 |
| BstX2I | RGATCY | 1 cut(s) | 1228 |
| BstYI | RGATCY | 1 cut(s) | 1228 |
| BsuI | GTATCC | 1 cut(s) | 1091 |
| BsuRI | GGCC | 3 cut(s) | 301, 801, 1330 |
| BtgI | CCRYGG | 1 cut(s) | 1240 |
| BtsCI | GGATG | 4 cut(s) | 252, 777, 1216, 1303 |
| BtsIMutI | CAGTG | 2 cut(s) | 432, 468 |
| BveI | ACCTGC | 1 cut(s) | 685 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1076 |
| CciI | TCATGA | 2 cut(s) | 304, 328 |
| CfoI | GCGC | 1 cut(s) | 963 |
| CseI | GACGC | 1 cut(s) | 1126 |
| CsiI | ACCWGGT | 1 cut(s) | 1339 |
| Csp6I | GTAC | 1 cut(s) | 1317 |
| CviAII | CATG | 9 cut(s) | 305, 329, 412, 649, 658, 691, 1147, 1266, 1270 |
| CviQI | GTAC | 1 cut(s) | 1317 |
| DdeI | CTNAG | 6 cut(s) | 73, 376, 471, 570, 1232, 1359 |
| DpnI | GATC | 7 cut(s) | 33, 272, 347, 449, 512, 1124, 1230 |
| DpnII | GATC | 7 cut(s) | 31, 270, 345, 447, 510, 1122, 1228 |
| EaeI | YGGCCR | 1 cut(s) | 1328 |
| Eam1104I | CTCTTC | 5 cut(s) | 348, 547, 562, 899, 1212 |
| EarI | CTCTTC | 5 cut(s) | 348, 547, 562, 899, 1212 |
| Ecl136II | GAGCTC | 1 cut(s) | 200 |
| Eco24I | GRGCYC | 2 cut(s) | 131, 202 |
| Eco31I | GGTCTC | 1 cut(s) | 1195 |
| Eco53kI | GAGCTC | 1 cut(s) | 200 |
| Eco57I | CTGAAG | 1 cut(s) | 574 |
| EcoICRI | GAGCTC | 1 cut(s) | 200 |
| EcoRII | CCWGG | 2 cut(s) | 130, 1339 |
| EcoT22I | ATGCAT | 1 cut(s) | 1271 |
| EcoT38I | GRGCYC | 2 cut(s) | 131, 202 |
| Esp3I | CGTCTC | 2 cut(s) | 573, 1214 |
| FaeI | CATG | 9 cut(s) | 308, 332, 415, 652, 661, 694, 1150, 1269, 1273 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 342, 374, 775, 807 |
| FaqI | GGGAC | 1 cut(s) | 1124 |
| FatI | CATG | 9 cut(s) | 304, 328, 411, 648, 657, 690, 1146, 1265, 1269 |
| Fnu4HI | GCNGC | 4 cut(s) | 532, 824, 1029, 1037 |
| FokI | GGATG | 4 cut(s) | 239, 784, 1223, 1310 |
| FriOI | GRGCYC | 2 cut(s) | 131, 202 |
| Fsp4HI | GCNGC | 4 cut(s) | 532, 824, 1029, 1037 |
| FspBI | CTAG | 2 cut(s) | 1158, 1253 |
| GlaI | GCGC | 1 cut(s) | 962 |
| GluI | GCNGC | 4 cut(s) | 532, 824, 1029, 1037 |
| GsaI | CCCAGC | 1 cut(s) | 1186 |
| GsuI | CTGGAG | 1 cut(s) | 232 |
| HaeIII | GGCC | 3 cut(s) | 301, 801, 1330 |
| HapII | CCGG | 2 cut(s) | 1170, 1284 |
| HgaI | GACGC | 1 cut(s) | 1126 |
| HhaI | GCGC | 1 cut(s) | 963 |
| Hin1II | CATG | 9 cut(s) | 308, 332, 415, 652, 661, 694, 1150, 1269, 1273 |
| Hin6I | GCGC | 1 cut(s) | 961 |
| HinP1I | GCGC | 1 cut(s) | 961 |
| HindIII | AAGCTT | 1 cut(s) | 476 |
| HinfI | GANTC | 6 cut(s) | 5, 163, 241, 504, 632, 968 |
| HpaII | CCGG | 2 cut(s) | 1170, 1284 |
| HphI | GGTGA | 3 cut(s) | 552, 1009, 1041 |
| Hpy166II | GTNNAC | 2 cut(s) | 405, 613 |
| Hpy188I | TCNGA | 4 cut(s) | 88, 379, 597, 639 |
| Hpy8I | GTNNAC | 2 cut(s) | 405, 613 |
| HpyCH4V | TGCA | 4 cut(s) | 694, 823, 1036, 1269 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 113, 783, 932, 981 |
| HpyF3I | CTNAG | 6 cut(s) | 73, 376, 471, 570, 1232, 1359 |
| Hsp92II | CATG | 9 cut(s) | 308, 332, 415, 652, 661, 694, 1150, 1269, 1273 |
| HspAI | GCGC | 1 cut(s) | 961 |
| Kzo9I | GATC | 7 cut(s) | 31, 270, 345, 447, 510, 1122, 1228 |
| LguI | GCTCTTC | 1 cut(s) | 348 |
| LmnI | GCTCC | 3 cut(s) | 104, 126, 980 |
| Lsp1109I | GCAGC | 4 cut(s) | 543, 835, 1040, 1048 |
| LweI | GCATC | 3 cut(s) | 261, 1082, 1163 |
| MabI | ACCWGGT | 1 cut(s) | 1339 |
| MaeI | CTAG | 2 cut(s) | 1158, 1253 |
| MaeIII | GTNAC | 2 cut(s) | 662, 1279 |
| MalI | GATC | 7 cut(s) | 33, 272, 347, 449, 512, 1124, 1230 |
| MboI | GATC | 7 cut(s) | 31, 270, 345, 447, 510, 1122, 1228 |
| MfeI | CAATTG | 1 cut(s) | 1092 |
| MflI | RGATCY | 1 cut(s) | 1228 |
| MhlI | GDGCHC | 2 cut(s) | 131, 202 |
| MlsI | TGGCCA | 1 cut(s) | 1330 |
| MluCI | AATT | 4 cut(s) | 35, 169, 1092, 1106 |
| MluNI | TGGCCA | 1 cut(s) | 1330 |
| MlyI | GAGTC | 2 cut(s) | 172, 250 |
| MmeI | TCCRAC | 1 cut(s) | 298 |
| Mox20I | TGGCCA | 1 cut(s) | 1330 |
| Mph1103I | ATGCAT | 1 cut(s) | 1271 |
| MroXI | GAANNNNTTC | 1 cut(s) | 336 |
| MscI | TGGCCA | 1 cut(s) | 1330 |
| MseI | TTAA | 5 cut(s) | 188, 416, 744, 1082, 1133 |
| MslI | CAYNNNNRTG | 1 cut(s) | 410 |
| Msp20I | TGGCCA | 1 cut(s) | 1330 |
| MspA1I | CMGCKG | 1 cut(s) | 1186 |
| MspI | CCGG | 2 cut(s) | 1170, 1284 |
| MspR9I | CCNGG | 3 cut(s) | 132, 1170, 1341 |
| MunI | CAATTG | 1 cut(s) | 1092 |
| MvaI | CCWGG | 2 cut(s) | 132, 1341 |
| MvnI | CGCG | 2 cut(s) | 961, 963 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 113, 783, 932, 981 |
| NciI | CCSGG | 1 cut(s) | 1170 |
| NdeII | GATC | 7 cut(s) | 31, 270, 345, 447, 510, 1122, 1228 |
| NlaIII | CATG | 9 cut(s) | 308, 332, 415, 652, 661, 694, 1150, 1269, 1273 |
| NlaIV | GGNNCC | 2 cut(s) | 128, 1163 |
| NsiI | ATGCAT | 1 cut(s) | 1271 |
| NspI | RCATGY | 2 cut(s) | 415, 694 |
| PagI | TCATGA | 2 cut(s) | 304, 328 |
| PciI | ACATGT | 1 cut(s) | 411 |
| PciSI | GCTCTTC | 1 cut(s) | 348 |
| PdmI | GAANNNNTTC | 1 cut(s) | 336 |
| PfeI | GAWTC | 3 cut(s) | 504, 632, 968 |
| PkrI | GCNGC | 4 cut(s) | 533, 825, 1030, 1038 |
| PleI | GAGTC | 2 cut(s) | 171, 249 |
| PpsI | GAGTC | 2 cut(s) | 171, 249 |
| PscI | ACATGT | 1 cut(s) | 411 |
| PsiI | TTATAA | 1 cut(s) | 174 |
| Psp124BI | GAGCTC | 1 cut(s) | 202 |
| Psp6I | CCWGG | 2 cut(s) | 130, 1339 |
| PspFI | CCCAGC | 1 cut(s) | 1182 |
| PspGI | CCWGG | 2 cut(s) | 130, 1339 |
| PspN4I | GGNNCC | 2 cut(s) | 128, 1163 |
| PstI | CTGCAG | 2 cut(s) | 825, 1038 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1076 |
| PsuI | RGATCY | 1 cut(s) | 1228 |
| PvuII | CAGCTG | 1 cut(s) | 1186 |
| RsaI | GTAC | 1 cut(s) | 1318 |
| RsaNI | GTAC | 1 cut(s) | 1317 |
| RseI | CAYNNNNRTG | 1 cut(s) | 410 |
| SacI | GAGCTC | 1 cut(s) | 202 |
| SapI | GCTCTTC | 1 cut(s) | 348 |
| SaqAI | TTAA | 5 cut(s) | 188, 416, 744, 1082, 1133 |
| SatI | GCNGC | 4 cut(s) | 532, 824, 1029, 1037 |
| Sau3AI | GATC | 7 cut(s) | 31, 270, 345, 447, 510, 1122, 1228 |
| SchI | GAGTC | 2 cut(s) | 172, 250 |
| ScrFI | CCNGG | 3 cut(s) | 132, 1170, 1341 |
| SduI | GDGCHC | 2 cut(s) | 131, 202 |
| SexAI | ACCWGGT | 1 cut(s) | 1339 |
| SfaNI | GCATC | 3 cut(s) | 261, 1082, 1163 |
| SfcI | CTRYAG | 3 cut(s) | 821, 1034, 1112 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 410 |
| SmlI | CTYRAG | 5 cut(s) | 160, 341, 485, 670, 750 |
| SmoI | CTYRAG | 5 cut(s) | 160, 341, 485, 670, 750 |
| Sse9I | AATT | 4 cut(s) | 35, 169, 1092, 1106 |
| SsiI | CCGC | 3 cut(s) | 959, 1308, 1353 |
| SspMI | CTAG | 2 cut(s) | 1158, 1253 |
| SstI | GAGCTC | 1 cut(s) | 202 |
| StyD4I | CCNGG | 3 cut(s) | 130, 1168, 1339 |
| TaqI | TCGA | 2 cut(s) | 620, 1125 |
| TasI | AATT | 4 cut(s) | 35, 169, 1092, 1106 |
| TfiI | GAWTC | 3 cut(s) | 504, 632, 968 |
| Tru1I | TTAA | 5 cut(s) | 188, 416, 744, 1082, 1133 |
| Tru9I | TTAA | 5 cut(s) | 188, 416, 744, 1082, 1133 |
| TscAI | CASTG | 2 cut(s) | 432, 475 |
| TseI | GCWGC | 4 cut(s) | 531, 823, 1028, 1036 |
| TspDTI | ATGAA | 7 cut(s) | 48, 99, 306, 345, 468, 800, 897 |
| TspRI | CASTG | 2 cut(s) | 432, 475 |
| XapI | RAATTY | 1 cut(s) | 1106 |
| XceI | RCATGY | 2 cut(s) | 415, 694 |
| XmnI | GAANNNNTTC | 1 cut(s) | 336 |
| XspI | CTAG | 2 cut(s) | 1158, 1253 |
| Zsp2I | ATGCAT | 1 cut(s) | 1271 |