AT1G27660

helix loop helix domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
9621398 .. 9626067
4670 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27660.1

Sequence Viewer

Length: 1362 bp
ATGGACTCTGCTAATCTCCATCAGCTTCAAGATCAATTACAGCTTGTGGGGTCTTCTTCATCTTCTTCTTCCTTAGACAATAACTCTGACCCTTCTTGCTATGGAGCTTCATCTGCCCATCAATGGAGCCCAGGAGGTATTTCTTTGAATAGTGTGAGCTTGAGTCATAATTATAACAATGAGATGTTAAACACAAGAGCTCACAACAACAACAACAACAACAACACAAGTGAATGTATGAGTCTCTCCAGCATCCACAATCACTCCTTGATCCAACAACAAGACTTTCCTTTACAATGGCCTCATGACCAATCTTCATATCAACATCATGAAGGACTTCTCAAGATCAAAGAAGAGCTTTCCTCATCAACTATCTCAGACCATCAAGAAGGCATATCCAAGTTCACAGACATGTTAAATAGTCCAGTGATAACAAACTATTTGAAGATCAATGAACATAAGGACTACACTGAGAAGCTTCTTCTCAAGAGTATGTCTTCTGGATTCCCGATCAATGGAGACTATGGTAGCAGCCTTCCCTCTTCTTCTTCTTCCTCTTCACCTTCGTCTCAGTCGCATAGAGGCAACTTCAGTCAGATTTACCCAAGCGTAAACATATCGAGTTTGAGCGAATCTCGGAAGATGAGCATGGACGACATGAGTAACATCTCAAGACCATTTGATATAAACATGCAGGTTTTTGATGGAAGATTGTTTGAAGGAAATGTATTAGTTCCTCCTTTTAACGCTCAAGAGATTAGTAGTCTTGGGATGAGCAGAGGAAGCCTTCCTTCTTTTGGCCTCCCTTTTCATCATCATCTGCAGCAAACACTTCCCCACCTTTCTTCTTCCCCTACTCATCAAATGGAAATGTTCAGCAATGAACCTCAAACAAGTGAAGGGAAGAGGCATAACTTCTTGATGGCAACAAAAGCAGGAGAAAATGCTTCCAAGAAACCGCGCGTGGAATCACGCTCCTCTTGCCCACCCTTCAAGGTGAGGAAAGAAAAGTTAGGAGACAGAATAGCAGCTCTGCAGCAGTTGGTTTCACCCTTTGGGAAGACAGATACAGCATCTGTGTTAATGGAAGCAATTGGATACATCAAATTCCTACAGAGCCAGATCGAGACTTTAAGCGTCCCCTACATGAGAGCATCTAGGAACCGACCCGGAAAAGCCTCCCAGCTGGTCTCACAATCACAAGAAGGGGATGAGGAAGAGACGAGAGATCTTAGAAGCCGTGGGCTATGTCTAGTGCCGTTATCATGCATGACTTATGTTACCGGAGATGGTGGGGATGGAGGAGGCGGTGTTGGTACTGGTTTTTGGCCAACGCCACCTGGTTTTGGTGGCGGAACTTAG

Protein Analysis

453

Amino Acids

49.56

Weight (kDa)

6.13

Isoelectric Point (pI)

73.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 685
AccII CGCG 2 cut(s) 961, 963
AciI CCGC 3 cut(s) 959, 1308, 1353
AclWI GGATC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 1328
AcsI RAATTY 1 cut(s) 1106
AcuI CTGAAG 1 cut(s) 574
AfaI GTAC 1 cut(s) 1318
AfiI CCNNNNNNNGG 4 cut(s) 123, 515, 797, 1346
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 5 cut(s) 29, 148, 445, 719, 994
AjnI CCWGG 2 cut(s) 130, 1339
AluBI AGCT 9 cut(s) 25, 43, 107, 159, 200, 358, 478, 1031, 1186
AluI AGCT 9 cut(s) 25, 43, 107, 159, 200, 358, 478, 1031, 1186
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 7 cut(s) 248, 513, 573, 1011, 1121, 1195, 1214
AlwI GGATC 1 cut(s) 265
AlwNI CAGNNNCTG 1 cut(s) 1076
AoxI GGCC 3 cut(s) 299, 799, 1328
ApeKI GCWGC 4 cut(s) 531, 823, 1028, 1036
ApoI RAATTY 1 cut(s) 1106
Asp700I GAANNNNTTC 1 cut(s) 336
AspLEI GCGC 1 cut(s) 963
AsuC2I CCSGG 1 cut(s) 1170
AsuHPI GGTGA 3 cut(s) 552, 1009, 1041
BalI TGGCCA 1 cut(s) 1330
BanII GRGCYC 2 cut(s) 131, 202
BbsI GAAGAC 3 cut(s) 45, 489, 1067
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 4 cut(s) 543, 835, 1040, 1048
BccI CCATC 7 cut(s) 27, 126, 390, 698, 916, 1283, 1292
BceAI ACGGC 2 cut(s) 1224, 1243
BciT130I CCWGG 2 cut(s) 132, 1341
BciVI GTATCC 1 cut(s) 1091
BcnI CCSGG 1 cut(s) 1170
BcoDI GTCTC 7 cut(s) 248, 513, 573, 1011, 1121, 1195, 1214
BfaI CTAG 2 cut(s) 1158, 1253
BfmI CTRYAG 3 cut(s) 821, 1034, 1112
BfuAI ACCTGC 1 cut(s) 685
BfuI GTATCC 1 cut(s) 1091
BglII AGATCT 1 cut(s) 1228
BisI GCNGC 4 cut(s) 532, 824, 1029, 1037
BlsI GCNGC 4 cut(s) 533, 825, 1030, 1038
Bme1390I CCNGG 3 cut(s) 132, 1170, 1341
BmiI GGNNCC 2 cut(s) 128, 1163
BmrFI CCNGG 3 cut(s) 132, 1170, 1341
BmsI GCATC 3 cut(s) 261, 1082, 1163
BpiI GAAGAC 3 cut(s) 45, 489, 1067
BplI GAGNNNNNCTC 4 cut(s) 347, 379, 619, 651
BpmI CTGGAG 1 cut(s) 232
BpuEI CTTGAG 5 cut(s) 181, 326, 470, 655, 735
BpuMI CCSGG 1 cut(s) 1170
BsaI GGTCTC 1 cut(s) 1195
BsaJI CCNNGG 2 cut(s) 130, 1240
BsaWI WCCGGW 1 cut(s) 1283
BsaXI ACNNNNNCTCC 4 cut(s) 248, 278, 1296, 1326
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 515, 797, 1346
Bse1I ACTGG 2 cut(s) 425, 1324
Bse3DI GCAATG 1 cut(s) 886
BseBI CCWGG 2 cut(s) 132, 1341
BseDI CCNNGG 2 cut(s) 130, 1240
BseGI GGATG 4 cut(s) 252, 777, 1216, 1303
BseLI CCNNNNNNNGG 4 cut(s) 123, 515, 797, 1346
BseMI GCAATG 1 cut(s) 886
BseMII CTCAG 3 cut(s) 390, 462, 584
BseNI ACTGG 2 cut(s) 425, 1324
BseRI GAGGAG 2 cut(s) 967, 1317
BseXI GCAGC 4 cut(s) 543, 835, 1040, 1048
BseYI CCCAGC 1 cut(s) 1182
Bsh1236I CGCG 2 cut(s) 961, 963
BshFI GGCC 3 cut(s) 301, 801, 1330
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 2 cut(s) 1170, 1284
BslFI GGGAC 1 cut(s) 1124
BslI CCNNNNNNNGG 4 cut(s) 123, 515, 797, 1346
BsmAI GTCTC 7 cut(s) 248, 513, 573, 1011, 1121, 1195, 1214
BsmBI CGTCTC 2 cut(s) 573, 1214
BsmFI GGGAC 1 cut(s) 1124
BsnI GGCC 3 cut(s) 301, 801, 1330
Bso31I GGTCTC 1 cut(s) 1195
Bsp1286I GDGCHC 2 cut(s) 131, 202
Bsp143I GATC 7 cut(s) 31, 270, 345, 447, 510, 1122, 1228
BspACI CCGC 3 cut(s) 959, 1308, 1353
BspANI GGCC 3 cut(s) 301, 801, 1330
BspCNI CTCAG 3 cut(s) 389, 463, 583
BspFNI CGCG 2 cut(s) 961, 963
BspHI TCATGA 2 cut(s) 304, 328
BspLI GGNNCC 2 cut(s) 128, 1163
BspMAI CTGCAG 2 cut(s) 825, 1038
BspMI ACCTGC 1 cut(s) 685
BspPI GGATC 1 cut(s) 265
BspQI GCTCTTC 1 cut(s) 348
BspTNI GGTCTC 1 cut(s) 1195
BsrDI GCAATG 1 cut(s) 886
BsrI ACTGG 2 cut(s) 425, 1324
BssECI CCNNGG 2 cut(s) 130, 1240
BssMI GATC 7 cut(s) 31, 270, 345, 447, 510, 1122, 1228
Bst2UI CCWGG 2 cut(s) 132, 1341
Bst6I CTCTTC 5 cut(s) 348, 547, 562, 899, 1212
BstDEI CTNAG 6 cut(s) 73, 376, 471, 570, 1232, 1359
BstDSI CCRYGG 1 cut(s) 1240
BstF5I GGATG 4 cut(s) 252, 777, 1216, 1303
BstFNI CGCG 2 cut(s) 961, 963
BstHHI GCGC 1 cut(s) 963
BstKTI GATC 7 cut(s) 34, 273, 348, 450, 513, 1125, 1231
BstMAI GTCTC 7 cut(s) 248, 513, 573, 1011, 1121, 1195, 1214
BstMBI GATC 7 cut(s) 31, 270, 345, 447, 510, 1122, 1228
BstMWI GCNNNNNNNGC 4 cut(s) 113, 783, 932, 981
BstNI CCWGG 2 cut(s) 132, 1341
BstNSI RCATGY 2 cut(s) 415, 694
BstSCI CCNGG 3 cut(s) 130, 1168, 1339
BstSFI CTRYAG 3 cut(s) 821, 1034, 1112
BstUI CGCG 2 cut(s) 961, 963
BstV1I GCAGC 4 cut(s) 543, 835, 1040, 1048
BstV2I GAAGAC 3 cut(s) 45, 489, 1067
BstX2I RGATCY 1 cut(s) 1228
BstYI RGATCY 1 cut(s) 1228
BsuI GTATCC 1 cut(s) 1091
BsuRI GGCC 3 cut(s) 301, 801, 1330
BtgI CCRYGG 1 cut(s) 1240
BtsCI GGATG 4 cut(s) 252, 777, 1216, 1303
BtsIMutI CAGTG 2 cut(s) 432, 468
BveI ACCTGC 1 cut(s) 685
CaiI CAGNNNCTG 1 cut(s) 1076
CciI TCATGA 2 cut(s) 304, 328
CfoI GCGC 1 cut(s) 963
CseI GACGC 1 cut(s) 1126
CsiI ACCWGGT 1 cut(s) 1339
Csp6I GTAC 1 cut(s) 1317
CviAII CATG 9 cut(s) 305, 329, 412, 649, 658, 691, 1147, 1266, 1270
CviQI GTAC 1 cut(s) 1317
DdeI CTNAG 6 cut(s) 73, 376, 471, 570, 1232, 1359
DpnI GATC 7 cut(s) 33, 272, 347, 449, 512, 1124, 1230
DpnII GATC 7 cut(s) 31, 270, 345, 447, 510, 1122, 1228
EaeI YGGCCR 1 cut(s) 1328
Eam1104I CTCTTC 5 cut(s) 348, 547, 562, 899, 1212
EarI CTCTTC 5 cut(s) 348, 547, 562, 899, 1212
Ecl136II GAGCTC 1 cut(s) 200
Eco24I GRGCYC 2 cut(s) 131, 202
Eco31I GGTCTC 1 cut(s) 1195
Eco53kI GAGCTC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 574
EcoICRI GAGCTC 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 130, 1339
EcoT22I ATGCAT 1 cut(s) 1271
EcoT38I GRGCYC 2 cut(s) 131, 202
Esp3I CGTCTC 2 cut(s) 573, 1214
FaeI CATG 9 cut(s) 308, 332, 415, 652, 661, 694, 1150, 1269, 1273
FalI AAGNNNNNCTT 4 cut(s) 342, 374, 775, 807
FaqI GGGAC 1 cut(s) 1124
FatI CATG 9 cut(s) 304, 328, 411, 648, 657, 690, 1146, 1265, 1269
Fnu4HI GCNGC 4 cut(s) 532, 824, 1029, 1037
FokI GGATG 4 cut(s) 239, 784, 1223, 1310
FriOI GRGCYC 2 cut(s) 131, 202
Fsp4HI GCNGC 4 cut(s) 532, 824, 1029, 1037
FspBI CTAG 2 cut(s) 1158, 1253
GlaI GCGC 1 cut(s) 962
GluI GCNGC 4 cut(s) 532, 824, 1029, 1037
GsaI CCCAGC 1 cut(s) 1186
GsuI CTGGAG 1 cut(s) 232
HaeIII GGCC 3 cut(s) 301, 801, 1330
HapII CCGG 2 cut(s) 1170, 1284
HgaI GACGC 1 cut(s) 1126
HhaI GCGC 1 cut(s) 963
Hin1II CATG 9 cut(s) 308, 332, 415, 652, 661, 694, 1150, 1269, 1273
Hin6I GCGC 1 cut(s) 961
HinP1I GCGC 1 cut(s) 961
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 6 cut(s) 5, 163, 241, 504, 632, 968
HpaII CCGG 2 cut(s) 1170, 1284
HphI GGTGA 3 cut(s) 552, 1009, 1041
Hpy166II GTNNAC 2 cut(s) 405, 613
Hpy188I TCNGA 4 cut(s) 88, 379, 597, 639
Hpy8I GTNNAC 2 cut(s) 405, 613
HpyCH4V TGCA 4 cut(s) 694, 823, 1036, 1269
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 783, 932, 981
HpyF3I CTNAG 6 cut(s) 73, 376, 471, 570, 1232, 1359
Hsp92II CATG 9 cut(s) 308, 332, 415, 652, 661, 694, 1150, 1269, 1273
HspAI GCGC 1 cut(s) 961
Kzo9I GATC 7 cut(s) 31, 270, 345, 447, 510, 1122, 1228
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 3 cut(s) 104, 126, 980
Lsp1109I GCAGC 4 cut(s) 543, 835, 1040, 1048
LweI GCATC 3 cut(s) 261, 1082, 1163
MabI ACCWGGT 1 cut(s) 1339
MaeI CTAG 2 cut(s) 1158, 1253
MaeIII GTNAC 2 cut(s) 662, 1279
MalI GATC 7 cut(s) 33, 272, 347, 449, 512, 1124, 1230
MboI GATC 7 cut(s) 31, 270, 345, 447, 510, 1122, 1228
MfeI CAATTG 1 cut(s) 1092
MflI RGATCY 1 cut(s) 1228
MhlI GDGCHC 2 cut(s) 131, 202
MlsI TGGCCA 1 cut(s) 1330
MluCI AATT 4 cut(s) 35, 169, 1092, 1106
MluNI TGGCCA 1 cut(s) 1330
MlyI GAGTC 2 cut(s) 172, 250
MmeI TCCRAC 1 cut(s) 298
Mox20I TGGCCA 1 cut(s) 1330
Mph1103I ATGCAT 1 cut(s) 1271
MroXI GAANNNNTTC 1 cut(s) 336
MscI TGGCCA 1 cut(s) 1330
MseI TTAA 5 cut(s) 188, 416, 744, 1082, 1133
MslI CAYNNNNRTG 1 cut(s) 410
Msp20I TGGCCA 1 cut(s) 1330
MspA1I CMGCKG 1 cut(s) 1186
MspI CCGG 2 cut(s) 1170, 1284
MspR9I CCNGG 3 cut(s) 132, 1170, 1341
MunI CAATTG 1 cut(s) 1092
MvaI CCWGG 2 cut(s) 132, 1341
MvnI CGCG 2 cut(s) 961, 963
MwoI GCNNNNNNNGC 4 cut(s) 113, 783, 932, 981
NciI CCSGG 1 cut(s) 1170
NdeII GATC 7 cut(s) 31, 270, 345, 447, 510, 1122, 1228
NlaIII CATG 9 cut(s) 308, 332, 415, 652, 661, 694, 1150, 1269, 1273
NlaIV GGNNCC 2 cut(s) 128, 1163
NsiI ATGCAT 1 cut(s) 1271
NspI RCATGY 2 cut(s) 415, 694
PagI TCATGA 2 cut(s) 304, 328
PciI ACATGT 1 cut(s) 411
PciSI GCTCTTC 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 3 cut(s) 504, 632, 968
PkrI GCNGC 4 cut(s) 533, 825, 1030, 1038
PleI GAGTC 2 cut(s) 171, 249
PpsI GAGTC 2 cut(s) 171, 249
PscI ACATGT 1 cut(s) 411
PsiI TTATAA 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 130, 1339
PspFI CCCAGC 1 cut(s) 1182
PspGI CCWGG 2 cut(s) 130, 1339
PspN4I GGNNCC 2 cut(s) 128, 1163
PstI CTGCAG 2 cut(s) 825, 1038
PstNI CAGNNNCTG 1 cut(s) 1076
PsuI RGATCY 1 cut(s) 1228
PvuII CAGCTG 1 cut(s) 1186
RsaI GTAC 1 cut(s) 1318
RsaNI GTAC 1 cut(s) 1317
RseI CAYNNNNRTG 1 cut(s) 410
SacI GAGCTC 1 cut(s) 202
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 5 cut(s) 188, 416, 744, 1082, 1133
SatI GCNGC 4 cut(s) 532, 824, 1029, 1037
Sau3AI GATC 7 cut(s) 31, 270, 345, 447, 510, 1122, 1228
SchI GAGTC 2 cut(s) 172, 250
ScrFI CCNGG 3 cut(s) 132, 1170, 1341
SduI GDGCHC 2 cut(s) 131, 202
SexAI ACCWGGT 1 cut(s) 1339
SfaNI GCATC 3 cut(s) 261, 1082, 1163
SfcI CTRYAG 3 cut(s) 821, 1034, 1112
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 5 cut(s) 160, 341, 485, 670, 750
SmoI CTYRAG 5 cut(s) 160, 341, 485, 670, 750
Sse9I AATT 4 cut(s) 35, 169, 1092, 1106
SsiI CCGC 3 cut(s) 959, 1308, 1353
SspMI CTAG 2 cut(s) 1158, 1253
SstI GAGCTC 1 cut(s) 202
StyD4I CCNGG 3 cut(s) 130, 1168, 1339
TaqI TCGA 2 cut(s) 620, 1125
TasI AATT 4 cut(s) 35, 169, 1092, 1106
TfiI GAWTC 3 cut(s) 504, 632, 968
Tru1I TTAA 5 cut(s) 188, 416, 744, 1082, 1133
Tru9I TTAA 5 cut(s) 188, 416, 744, 1082, 1133
TscAI CASTG 2 cut(s) 432, 475
TseI GCWGC 4 cut(s) 531, 823, 1028, 1036
TspDTI ATGAA 7 cut(s) 48, 99, 306, 345, 468, 800, 897
TspRI CASTG 2 cut(s) 432, 475
XapI RAATTY 1 cut(s) 1106
XceI RCATGY 2 cut(s) 415, 694
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 2 cut(s) 1158, 1253
Zsp2I ATGCAT 1 cut(s) 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.