RLG00000011240

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007400
Physical Location & Seq
Forward (+)
7912712 .. 7916505
3794 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011240

Sequence Viewer

Length: 1428 bp
ATGGAGTCTGCAAATCTCCATCACCAGCATCATCAGCTCCAAGAGAATCTTGGTCATATCGGGTCTTCTTCTTCCTCTTCTTTAGCTACTGCCCCATCTTACTATGGAGTTGGAATCAAGCATGCTTGGACCCAGCCTACTACTACTACTACTAACGCCACTAATTTGAGCAACCCATCAAATTCAAGCTTCAACAGTAGTAGTTCTATTAATATGGTACCAGATTTGGGTTTTCACTGCTGGCCTCCTAGCAGTAGTAATAATTTGAATAGAGCTGGAAGCAGTAGTAGTATTAAGGAAGAGCTCTCATCATCTTCATCAGATTCAACCTTTCCAAAATTTACACAAATGCTGACCAGCCCCTCCACCTCTAGTATTAACCTTGATGATGATGACTACCACTTTCCTACTCCTACAAGCCTCGGCCTTATAAAGAATGAGCAGAAAGAAATGATGATGAATGATCTCAGTGAAAAACTCTTGCTCAAGACCTTGTCCTCTTCTGGAATTAATCATCAAATTTCATTAGCTGGAGATTATCATCATCATCAACAACAATTTTACAGCTCAAATAACACCCATGTCCAGAATTTTACTCAATTGATGCCTGGGAGATCAGGAGGGCAATACTTCAGCCAAATTTATCCCAGCATAAATATTTCCAACTTAAATCAACAGTCGTCGCCGTCGTCAGCAATCTCAAGCTGTGGCTCCTCAGACATGAACTTGCAGGCTATTGATCTCTTAGCTTCTTCGAGATTTAGTGCTCATGAGCCTTCTAATTCACATGATAACCTTGGCATATACAACAAGGAAATTAGGCATAATTCCTTCGTTCTTCAACAGATGCACCAATCAAGAACAAATCATCTTGATCATAGTCTGCTATCTTGTGGTACCAATAGTAAAATATCGTCTTTTGAGAATGAAATAACAGAAGTGAAGCGACCTGGCAGTTTGATTGAGCCAAAGGCAACACAAGCAGCTGCACCAAAGAAATCGCGGTTGGAGTCACGCACTCCCTGCCCACCCCTTAAGGTTAGGAAGGAGAAATTAGGAGATAGAATTGCAACTCTTCAGCAATTGGTTGCACCCTTTGGCAAGACCGACACAGCATCCGTACTGATGGAGGCTATCGGATACATCAAGTTCCTGCAAAACCAGGTCGAGACACTAAGCGTCCCATACATGAAGTCATCACGCAACAACAAGCCCTCTAAAGCAATGTTGCAAGGGGGTGTGATAGAGATAAATGGCTCAAATGGAGATCATGAGAGAAAGCGAGATCTGAGAAGTAGAGGGCTGTGTTTGGTGCCATTGTCGTGCATGTCGTATGTCACAGCTGGTACTGACGCTGCTACTGCCACTGCTGGTGTTTCTGGAAGCGTTAACTGGCCAAGCCCTAACTATGGTCATGGAGGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

476

Amino Acids

51.62

Weight (kDa)

7.75

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
Acc65I GGTACC 2 cut(s) 217, 896
AccB1I GGYRCC 3 cut(s) 217, 896, 1312
AccII CGCG 1 cut(s) 1003
AciI CCGC 1 cut(s) 1003
AcoI YGGCCR 1 cut(s) 1394
AcsI RAATTY 5 cut(s) 181, 338, 519, 589, 639
AcuI CTGAAG 2 cut(s) 616, 1061
AfaI GTAC 4 cut(s) 219, 898, 1122, 1348
AfiI CCNNNNNNNGG 2 cut(s) 227, 1409
AflII CTTAAG 1 cut(s) 1034
AgsI TTSAA 5 cut(s) 186, 193, 268, 327, 842
AjnI CCWGG 3 cut(s) 607, 949, 1161
AjuI GAANNNNNNNTTGG 2 cut(s) 989, 1021
Alw21I GWGCWC 2 cut(s) 306, 769
Alw26I GTCTC 1 cut(s) 1163
AoxI GGCC 3 cut(s) 242, 424, 1394
ApeKI GCWGC 3 cut(s) 983, 986, 1355
ApoI RAATTY 5 cut(s) 181, 338, 519, 589, 639
AseI ATTAAT 2 cut(s) 210, 510
Asp718I GGTACC 2 cut(s) 217, 896
AspS9I GGNCC 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 14
AvaII GGWCC 1 cut(s) 129
BalI TGGCCA 1 cut(s) 1396
BanI GGYRCC 3 cut(s) 217, 896, 1312
BanII GRGCYC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 306, 769
BbvI GCAGC 3 cut(s) 973, 995, 1342
BccI CCATC 4 cut(s) 27, 103, 184, 1120
BceAI ACGGC 1 cut(s) 670
BciT130I CCWGG 3 cut(s) 609, 951, 1163
BciVI GTATCC 1 cut(s) 1133
BclI TGATCA 1 cut(s) 874
BcoDI GTCTC 1 cut(s) 1163
BfaI CTAG 2 cut(s) 249, 372
BfrI CTTAAG 1 cut(s) 1034
BfuI GTATCC 1 cut(s) 1133
BglII AGATCT 1 cut(s) 1285
BisI GCNGC 3 cut(s) 984, 987, 1356
BlsI GCNGC 3 cut(s) 985, 988, 1357
Bme1390I CCNGG 3 cut(s) 609, 951, 1163
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 129
BmiI GGNNCC 5 cut(s) 131, 219, 712, 898, 1314
BmrFI CCNGG 3 cut(s) 609, 951, 1163
BmsI GCATC 4 cut(s) 37, 594, 837, 1124
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 552
BpuEI CTTGAG 2 cut(s) 470, 685
BsaBI GATNNNNATC 1 cut(s) 540
BsaJI CCNNGG 3 cut(s) 421, 608, 796
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 1409
Bse1I ACTGG 1 cut(s) 1397
Bse3DI GCAATG 1 cut(s) 1230
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 3 cut(s) 609, 951, 1163
BseDI CCNNGG 3 cut(s) 421, 608, 796
BseGI GGATG 1 cut(s) 1115
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 227, 1409
BseMI GCAATG 1 cut(s) 1230
BseMII CTCAG 3 cut(s) 481, 729, 1280
BseNI ACTGG 1 cut(s) 1397
BseRI GAGGAG 1 cut(s) 703
BseXI GCAGC 3 cut(s) 973, 995, 1342
BseYI CCCAGC 2 cut(s) 132, 647
BsgI GTGCAG 1 cut(s) 972
Bsh1236I CGCG 1 cut(s) 1003
BshFI GGCC 3 cut(s) 244, 426, 1396
BshNI GGYRCC 3 cut(s) 217, 896, 1312
BsiHKAI GWGCWC 2 cut(s) 306, 769
BslFI GGGAC 1 cut(s) 1166
BslI CCNNNNNNNGG 2 cut(s) 227, 1409
BsmAI GTCTC 1 cut(s) 1163
BsmFI GGGAC 1 cut(s) 1166
BsnI GGCC 3 cut(s) 244, 426, 1396
Bsp1286I GDGCHC 2 cut(s) 306, 769
Bsp143I GATC 6 cut(s) 463, 614, 739, 874, 1267, 1285
BspACI CCGC 1 cut(s) 1003
BspANI GGCC 3 cut(s) 244, 426, 1396
BspCNI CTCAG 3 cut(s) 480, 728, 1281
BspFNI CGCG 1 cut(s) 1003
BspHI TCATGA 2 cut(s) 769, 1270
BspLI GGNNCC 5 cut(s) 131, 219, 712, 898, 1314
BspQI GCTCTTC 1 cut(s) 294
BspT107I GGYRCC 3 cut(s) 217, 896, 1312
BspTI CTTAAG 1 cut(s) 1034
BsrDI GCAATG 1 cut(s) 1230
BsrI ACTGG 1 cut(s) 1397
BssECI CCNNGG 3 cut(s) 421, 608, 796
BssMI GATC 6 cut(s) 463, 614, 739, 874, 1267, 1285
BssT1I CCWWGG 1 cut(s) 796
Bst2UI CCWGG 3 cut(s) 609, 951, 1163
Bst4CI ACNGT 2 cut(s) 197, 678
Bst6I CTCTTC 4 cut(s) 82, 294, 505, 1080
BstAFI CTTAAG 1 cut(s) 1034
BstAPI GCANNNNNTGC 1 cut(s) 1023
BstC8I GCNNGC 3 cut(s) 123, 242, 732
BstDEI CTNAG 5 cut(s) 467, 715, 745, 1175, 1289
BstF5I GGATG 1 cut(s) 1115
BstFNI CGCG 1 cut(s) 1003
BstKTI GATC 6 cut(s) 466, 617, 742, 877, 1270, 1288
BstMAI GTCTC 1 cut(s) 1163
BstMBI GATC 6 cut(s) 463, 614, 739, 874, 1267, 1285
BstMWI GCNNNNNNNGC 4 cut(s) 34, 980, 1023, 1361
BstNI CCWGG 3 cut(s) 609, 951, 1163
BstNSI RCATGY 2 cut(s) 125, 1330
BstSCI CCNGG 3 cut(s) 607, 949, 1161
BstUI CGCG 1 cut(s) 1003
BstV1I GCAGC 3 cut(s) 973, 995, 1342
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 1285
BstYI RGATCY 1 cut(s) 1285
BsuI GTATCC 1 cut(s) 1133
BsuRI GGCC 3 cut(s) 244, 426, 1396
BtsCI GGATG 1 cut(s) 1115
BtsI GCAGTG 2 cut(s) 235, 1365
BtsIMutI CAGTG 3 cut(s) 235, 475, 1365
Cac8I GCNNGC 3 cut(s) 123, 242, 732
CciI TCATGA 2 cut(s) 769, 1270
Cfr13I GGNCC 1 cut(s) 129
CseI GACGC 2 cut(s) 1168, 1361
CsiI ACCWGGT 1 cut(s) 1161
Csp6I GTAC 4 cut(s) 218, 897, 1121, 1347
CviAII CATG 9 cut(s) 122, 581, 721, 770, 788, 1189, 1271, 1327, 1415
CviQI GTAC 4 cut(s) 218, 897, 1121, 1347
DdeI CTNAG 5 cut(s) 467, 715, 745, 1175, 1289
DpnI GATC 6 cut(s) 465, 616, 741, 876, 1269, 1287
DpnII GATC 6 cut(s) 463, 614, 739, 874, 1267, 1285
EaeI YGGCCR 1 cut(s) 1394
Eam1104I CTCTTC 4 cut(s) 82, 294, 505, 1080
EarI CTCTTC 4 cut(s) 82, 294, 505, 1080
Ecl136II GAGCTC 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 796
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 2 cut(s) 616, 1061
EcoICRI GAGCTC 1 cut(s) 304
EcoRII CCWGG 3 cut(s) 607, 949, 1161
EcoT14I CCWWGG 1 cut(s) 796
EcoT38I GRGCYC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 796
FaeI CATG 9 cut(s) 125, 584, 724, 773, 791, 1192, 1274, 1330, 1418
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 1 cut(s) 1166
FatI CATG 9 cut(s) 121, 580, 720, 769, 787, 1188, 1270, 1326, 1414
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 3 cut(s) 984, 987, 1356
FokI GGATG 1 cut(s) 1102
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 3 cut(s) 984, 987, 1356
FspBI CTAG 2 cut(s) 249, 372
GluI GCNGC 3 cut(s) 984, 987, 1356
GsaI CCCAGC 2 cut(s) 136, 651
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 3 cut(s) 244, 426, 1396
HgaI GACGC 2 cut(s) 1168, 1361
Hin1II CATG 9 cut(s) 125, 584, 724, 773, 791, 1192, 1274, 1330, 1418
HincII GTYRAC 1 cut(s) 1390
HindII GTYRAC 1 cut(s) 1390
HindIII AAGCTT 1 cut(s) 187
HinfI GANTC 5 cut(s) 5, 46, 114, 323, 1010
HpaI GTTAAC 1 cut(s) 1390
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 1390
Hpy188I TCNGA 4 cut(s) 322, 718, 1139, 1290
Hpy8I GTNNAC 1 cut(s) 1390
Hpy99I CGWCG 2 cut(s) 685, 691
HpyAV CCTTC 3 cut(s) 786, 841, 1039
HpyCH4III ACNGT 2 cut(s) 197, 678
HpyCH4V TGCA 9 cut(s) 11, 730, 850, 989, 1070, 1091, 1156, 1231, 1326
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 980, 1023, 1361
HpyF3I CTNAG 5 cut(s) 467, 715, 745, 1175, 1289
Hsp92II CATG 9 cut(s) 125, 584, 724, 773, 791, 1192, 1274, 1330, 1418
KpnI GGTACC 2 cut(s) 221, 900
Ksp22I TGATCA 1 cut(s) 874
KspAI GTTAAC 1 cut(s) 1390
Kzo9I GATC 6 cut(s) 463, 614, 739, 874, 1267, 1285
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 2 cut(s) 42, 716
Lsp1109I GCAGC 3 cut(s) 973, 995, 1342
LweI GCATC 4 cut(s) 37, 594, 837, 1124
MabI ACCWGGT 1 cut(s) 1161
MaeI CTAG 2 cut(s) 249, 372
MaeIII GTNAC 2 cut(s) 1011, 1336
MalI GATC 6 cut(s) 465, 616, 741, 876, 1269, 1287
MboI GATC 6 cut(s) 463, 614, 739, 874, 1267, 1285
MfeI CAATTG 2 cut(s) 599, 1082
MflI RGATCY 1 cut(s) 1285
MhlI GDGCHC 2 cut(s) 306, 769
MlsI TGGCCA 1 cut(s) 1396
MluNI TGGCCA 1 cut(s) 1396
MlyI GAGTC 2 cut(s) 14, 1019
MmeI TCCRAC 3 cut(s) 91, 687, 987
Mox20I TGGCCA 1 cut(s) 1396
MscI TGGCCA 1 cut(s) 1396
MseI TTAA 7 cut(s) 210, 294, 378, 510, 668, 1035, 1389
MslI CAYNNNNRTG 1 cut(s) 1321
Msp20I TGGCCA 1 cut(s) 1396
MspA1I CMGCKG 2 cut(s) 986, 1343
MspCI CTTAAG 1 cut(s) 1034
MspR9I CCNGG 3 cut(s) 609, 951, 1163
MunI CAATTG 2 cut(s) 599, 1082
MvaI CCWGG 3 cut(s) 609, 951, 1163
MvnI CGCG 1 cut(s) 1003
MwoI GCNNNNNNNGC 4 cut(s) 34, 980, 1023, 1361
NdeII GATC 6 cut(s) 463, 614, 739, 874, 1267, 1285
NlaIII CATG 9 cut(s) 125, 584, 724, 773, 791, 1192, 1274, 1330, 1418
NlaIV GGNNCC 5 cut(s) 131, 219, 712, 898, 1314
NmeAIII GCCGAG 1 cut(s) 402
NmuCI GTSAC 2 cut(s) 1011, 1336
NspI RCATGY 2 cut(s) 125, 1330
PaeI GCATGC 1 cut(s) 125
PagI TCATGA 2 cut(s) 769, 1270
PciSI GCTCTTC 1 cut(s) 294
PcsI WCGNNNNNNNCGW 2 cut(s) 686, 1328
PfeI GAWTC 3 cut(s) 46, 114, 323
PflFI GACNNNGTC 1 cut(s) 493
PkrI GCNGC 3 cut(s) 985, 988, 1357
PleI GAGTC 2 cut(s) 13, 1018
PpsI GAGTC 2 cut(s) 13, 1018
PshBI ATTAAT 2 cut(s) 210, 510
PsiI TTATAA 1 cut(s) 431
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 3 cut(s) 607, 949, 1161
PspFI CCCAGC 2 cut(s) 132, 647
PspGI CCWGG 3 cut(s) 607, 949, 1161
PspN4I GGNNCC 5 cut(s) 131, 219, 712, 898, 1314
PspPI GGNCC 1 cut(s) 129
PsuI RGATCY 1 cut(s) 1285
PsyI GACNNNGTC 1 cut(s) 493
PvuII CAGCTG 2 cut(s) 986, 1343
RsaI GTAC 4 cut(s) 219, 898, 1122, 1348
RsaNI GTAC 4 cut(s) 218, 897, 1121, 1347
RseI CAYNNNNRTG 1 cut(s) 1321
SacI GAGCTC 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 7 cut(s) 210, 294, 378, 510, 668, 1035, 1389
SatI GCNGC 3 cut(s) 984, 987, 1356
Sau3AI GATC 6 cut(s) 463, 614, 739, 874, 1267, 1285
Sau96I GGNCC 1 cut(s) 129
SchI GAGTC 2 cut(s) 14, 1019
ScrFI CCNGG 3 cut(s) 609, 951, 1163
SduI GDGCHC 2 cut(s) 306, 769
SexAI ACCWGGT 1 cut(s) 1161
SfaNI GCATC 4 cut(s) 37, 594, 837, 1124
SinI GGWCC 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 1321
SmlI CTYRAG 3 cut(s) 485, 700, 1034
SmoI CTYRAG 3 cut(s) 485, 700, 1034
SphI GCATGC 1 cut(s) 125
SsiI CCGC 1 cut(s) 1003
SspI AATATT 1 cut(s) 658
SspMI CTAG 2 cut(s) 249, 372
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 3 cut(s) 607, 949, 1161
StyI CCWWGG 1 cut(s) 796
TaaI ACNGT 2 cut(s) 197, 678
TaqI TCGA 2 cut(s) 755, 1167
TaqII GACCGA 1 cut(s) 1121
TfiI GAWTC 3 cut(s) 46, 114, 323
Tru1I TTAA 7 cut(s) 210, 294, 378, 510, 668, 1035, 1389
Tru9I TTAA 7 cut(s) 210, 294, 378, 510, 668, 1035, 1389
TscAI CASTG 3 cut(s) 242, 475, 1372
TseFI GTSAC 2 cut(s) 1011, 1336
TseI GCWGC 3 cut(s) 983, 986, 1355
Tsp45I GTSAC 2 cut(s) 1011, 1336
TspDTI ATGAA 6 cut(s) 306, 473, 513, 737, 942, 1205
TspGWI ACGGA 1 cut(s) 1108
TspRI CASTG 3 cut(s) 242, 475, 1372
Tth111I GACNNNGTC 1 cut(s) 493
Vha464I CTTAAG 1 cut(s) 1034
VpaK11BI GGWCC 1 cut(s) 129
VspI ATTAAT 2 cut(s) 210, 510
XapI RAATTY 5 cut(s) 181, 338, 519, 589, 639
XceI RCATGY 2 cut(s) 125, 1330
XcmI CCANNNNNNNNNTGG 1 cut(s) 47
XspI CTAG 2 cut(s) 249, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.