Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007400

Physical Location & Seq

Genomic Coordinates Reverse (-)

60815681 .. 60819903

Gene Structure 4223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGAGTCTGCAAATCTCCATCACCAGCATCATCAGCTCCAAGAGAATCTTGGACATCTCGGGTCTTCTTCTTCCTCTTCTTTAGCTACTGCCCCATCTTACTATGGAGTTGGAATCAAGCATGCTTGGACCCAGCCTACTACTACTACTACTAACACCACTAATTTGAGCAACCCATCAAATTCAAGCTTCAACAGTAGTAGTTCTATTAATATGGTACCAGATTTGGGTTTTCACTGCTGGCCTCCTAGCAGTAGTAATAATTTGAATAGAGCTGGAAGCAGTAGTAGTATTAAGGAAGAGCTCTCATCATCTTCATCAGATTCAACCTTTCCAAAATTTACACAAATGCTGACCAGCCCCTCCACCACTAGTATTAACCTTGATGATGATGACTACCACTTTCCTACTCCTACAAGCCTCGGCCTTATAAAGAATGAGCAGAAAGAAATGATGATGAATGATCTCAGCGAAAAACTCTTGCTCAAGACCTTGTCCTCTTCTGGAATTAATCATCAAATTTCATTAGCTGGAGATTTTCATCATCATCATCATCAACAATTTTACAGCTCAAATAACACCCATGTCCAGAATTTTACTCAATTGATGCCTGGGAGATCAGGAGGGCAATACTTCAGCCAAATTTATCCCAGCATAAATATTTCCAACTTAAACCAACAGTCGTCGCCGTCGTCAGCAATCTCAAGCTGTGGCTCCTCAGACATGAGCTTGCAGGCTATTGATCTCTTAGCTTCTTCGAGATTTAGTGCTCATGAGCCTTCTATTTCACATGATACCCTTGGCATATACAACAAGGAAATTAGGCATAATTCCTTTGGTCTTCAACAGATGCACCAATCAAGAACAAATCATCATGATCATAGTCTGCTATCTTGTGGTACCAATAGTAAAATATCGTCTTTTGAGAATGAAATAACAGAAATGAAGCGACCTGGCAGTTTGATTGAGCCAAAGGCAACACAAGCAGCTGCACCAAAGAAATCGCGGTTGGAGTCACGCACTCCCTGCCCACCCCTTAAGGTTAGGAAGGAGAAATTAGGAGATAGAATTGCAACTCTTCAGCAATTGGTTGCACCCTTTGGCAAGACCGACACAGCATCCGTACTGATGGAGGCTATCGGATACATCAAGTTCCTGCAAAACCAGGTCGAGACACTAAGCGTCCCATACATGAAGTCATCATCACGCAACAAGCAGCCCTCTAAAGCAATGTTGCAAAGGGGAGTGATAGAGATAAATGGCTCAAATGGAGATCATGAGAGAAAGCGAGATCTGAGAAGTAGAGGGCTGTGTTTGGTGCCATTGTCGTGCATGTCGTATGTTACAGCTGGTACTGACGCTGCTAATGCCACTGCTGGTGTTTCTGGAAGCGTTAACTGGCCAAGCCCTAACTATGGTCATGGAGGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

477

Amino Acids

51.98

Weight (kDa)

8.16

Isoelectric Point (pI)

58.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27660
fragaria_vesca	FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400
malus_domestica	MD08G1026300.v1.1 MD15G1023100.v1.1
prunus_persica	Prupe.1G375000_v2.0.a1 Prupe.1G375000_v2.0.a1
pyrus_communis	pycom08g02040
rosa_chinensis	RchiOBHm_Chr6g0301601
rosa_laevigata	RLG00000011240
rosa_multiflora	Rmu_ssc0000452.1_g000010
rosa_roxburghii	Rroxscaffold_7G00166620
rosa_rugosa	Rorug06G0306800 Rorug06G0306900 Rorug06G0307000 Rorug06G0307100 Rorug06G0307100
rosa_samantha	Rh6AG420000 Rh6BG426100 Rh6CG433000 Rh6DG419400
rosa_wichuraiana	Rw6G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
Acc65I	GGTACC	2 cut(s)	217, 899
AccB1I	GGYRCC	3 cut(s)	217, 899, 1318
AccII	CGCG	1 cut(s)	1006
AciI	CCGC	1 cut(s)	1006
AcoI	YGGCCR	1 cut(s)	1400
AcsI	RAATTY	5 cut(s)	181, 338, 519, 592, 642
AcuI	CTGAAG	2 cut(s)	619, 1064
AfaI	GTAC	4 cut(s)	219, 901, 1125, 1354
AfiI	CCNNNNNNNGG	2 cut(s)	227, 1415
AflII	CTTAAG	1 cut(s)	1037
AgsI	TTSAA	5 cut(s)	186, 193, 268, 327, 845
AhlI	ACTAGT	1 cut(s)	371
AjnI	CCWGG	3 cut(s)	610, 952, 1164
AjuI	GAANNNNNNNTTGG	2 cut(s)	992, 1024
Alw21I	GWGCWC	2 cut(s)	306, 772
Alw26I	GTCTC	1 cut(s)	1166
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	3 cut(s)	242, 424, 1400
ApeKI	GCWGC	4 cut(s)	986, 989, 1216, 1361
ApoI	RAATTY	5 cut(s)	181, 338, 519, 592, 642
AseI	ATTAAT	2 cut(s)	210, 510
Asp718I	GGTACC	2 cut(s)	217, 899
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	1402
BanI	GGYRCC	3 cut(s)	217, 899, 1318
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	2 cut(s)	57, 833
Bbv12I	GWGCWC	2 cut(s)	306, 772
BbvI	GCAGC	4 cut(s)	976, 998, 1228, 1348
BccI	CCATC	4 cut(s)	27, 103, 184, 1123
BceAI	ACGGC	1 cut(s)	673
BciT130I	CCWGG	3 cut(s)	612, 954, 1166
BciVI	GTATCC	1 cut(s)	1136
BclI	TGATCA	1 cut(s)	877
BcoDI	GTCTC	1 cut(s)	1166
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	2 cut(s)	249, 372
BfrI	CTTAAG	1 cut(s)	1037
BfuI	GTATCC	1 cut(s)	1136
BglII	AGATCT	1 cut(s)	1291
BisI	GCNGC	4 cut(s)	987, 990, 1217, 1362
BlsI	GCNGC	4 cut(s)	988, 991, 1218, 1363
Bme1390I	CCNGG	3 cut(s)	612, 954, 1166
Bme18I	GGWCC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	5 cut(s)	131, 219, 715, 901, 1320
BmrFI	CCNGG	3 cut(s)	612, 954, 1166
BmsI	GCATC	4 cut(s)	37, 597, 840, 1127
BpiI	GAAGAC	2 cut(s)	57, 833
BpmI	CTGGAG	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	470, 688
BsaBI	GATNNNNATC	1 cut(s)	540
BsaJI	CCNNGG	3 cut(s)	421, 611, 799
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 1415
Bse1I	ACTGG	1 cut(s)	1403
Bse3DI	GCAATG	1 cut(s)	1236
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	3 cut(s)	612, 954, 1166
BseDI	CCNNGG	3 cut(s)	421, 611, 799
BseGI	GGATG	1 cut(s)	1118
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	2 cut(s)	227, 1415
BseMI	GCAATG	1 cut(s)	1236
BseMII	CTCAG	3 cut(s)	481, 732, 1286
BseNI	ACTGG	1 cut(s)	1403
BseRI	GAGGAG	1 cut(s)	706
BseXI	GCAGC	4 cut(s)	976, 998, 1228, 1348
BseYI	CCCAGC	2 cut(s)	132, 650
BsgI	GTGCAG	1 cut(s)	975
Bsh1236I	CGCG	1 cut(s)	1006
BshFI	GGCC	3 cut(s)	244, 426, 1402
BshNI	GGYRCC	3 cut(s)	217, 899, 1318
BsiHKAI	GWGCWC	2 cut(s)	306, 772
BsiHKCI	CYCGRG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	1169
BslI	CCNNNNNNNGG	2 cut(s)	227, 1415
BsmAI	GTCTC	1 cut(s)	1166
BsmFI	GGGAC	1 cut(s)	1169
BsnI	GGCC	3 cut(s)	244, 426, 1402
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	306, 772
Bsp143I	GATC	6 cut(s)	463, 617, 742, 877, 1273, 1291
BspACI	CCGC	1 cut(s)	1006
BspANI	GGCC	3 cut(s)	244, 426, 1402
BspCNI	CTCAG	3 cut(s)	480, 731, 1287
BspFNI	CGCG	1 cut(s)	1006
BspHI	TCATGA	3 cut(s)	772, 874, 1276
BspLI	GGNNCC	5 cut(s)	131, 219, 715, 901, 1320
BspQI	GCTCTTC	1 cut(s)	294
BspT107I	GGYRCC	3 cut(s)	217, 899, 1318
BspTI	CTTAAG	1 cut(s)	1037
BsrDI	GCAATG	1 cut(s)	1236
BsrI	ACTGG	1 cut(s)	1403
BssECI	CCNNGG	3 cut(s)	421, 611, 799
BssMI	GATC	6 cut(s)	463, 617, 742, 877, 1273, 1291
BssT1I	CCWWGG	1 cut(s)	799
Bst2UI	CCWGG	3 cut(s)	612, 954, 1166
Bst4CI	ACNGT	2 cut(s)	197, 681
Bst6I	CTCTTC	4 cut(s)	82, 294, 505, 1083
BstAFI	CTTAAG	1 cut(s)	1037
BstAPI	GCANNNNNTGC	1 cut(s)	1026
BstC8I	GCNNGC	4 cut(s)	123, 242, 731, 735
BstDEI	CTNAG	5 cut(s)	467, 718, 748, 1178, 1295
BstF5I	GGATG	1 cut(s)	1118
BstFNI	CGCG	1 cut(s)	1006
BstKTI	GATC	6 cut(s)	466, 620, 745, 880, 1276, 1294
BstMAI	GTCTC	1 cut(s)	1166
BstMBI	GATC	6 cut(s)	463, 617, 742, 877, 1273, 1291
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 983, 1026, 1367
BstNI	CCWGG	3 cut(s)	612, 954, 1166
BstNSI	RCATGY	2 cut(s)	125, 1336
BstSCI	CCNGG	3 cut(s)	610, 952, 1164
BstUI	CGCG	1 cut(s)	1006
BstV1I	GCAGC	4 cut(s)	976, 998, 1228, 1348
BstV2I	GAAGAC	2 cut(s)	57, 833
BstX2I	RGATCY	1 cut(s)	1291
BstYI	RGATCY	1 cut(s)	1291
BsuI	GTATCC	1 cut(s)	1136
BsuRI	GGCC	3 cut(s)	244, 426, 1402
BtsCI	GGATG	1 cut(s)	1118
BtsI	GCAGTG	2 cut(s)	235, 1371
BtsIMutI	CAGTG	2 cut(s)	235, 1371
Cac8I	GCNNGC	4 cut(s)	123, 242, 731, 735
CciI	TCATGA	3 cut(s)	772, 874, 1276
Cfr13I	GGNCC	1 cut(s)	129
CseI	GACGC	2 cut(s)	1171, 1367
CsiI	ACCWGGT	1 cut(s)	1164
Csp6I	GTAC	4 cut(s)	218, 900, 1124, 1353
CviQI	GTAC	4 cut(s)	218, 900, 1124, 1353
DdeI	CTNAG	5 cut(s)	467, 718, 748, 1178, 1295
DpnI	GATC	6 cut(s)	465, 619, 744, 879, 1275, 1293
DpnII	GATC	6 cut(s)	463, 617, 742, 877, 1273, 1291
EaeI	YGGCCR	1 cut(s)	1400
Eam1104I	CTCTTC	4 cut(s)	82, 294, 505, 1083
EarI	CTCTTC	4 cut(s)	82, 294, 505, 1083
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	799
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	2 cut(s)	619, 1064
Eco88I	CYCGRG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	304
EcoRII	CCWGG	3 cut(s)	610, 952, 1164
EcoT14I	CCWWGG	1 cut(s)	799
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	799
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	1 cut(s)	1169
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	4 cut(s)	987, 990, 1217, 1362
FokI	GGATG	1 cut(s)	1105
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	4 cut(s)	987, 990, 1217, 1362
FspBI	CTAG	2 cut(s)	249, 372
GluI	GCNGC	4 cut(s)	987, 990, 1217, 1362
GsaI	CCCAGC	2 cut(s)	136, 654
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	3 cut(s)	244, 426, 1402
HgaI	GACGC	2 cut(s)	1171, 1367
HincII	GTYRAC	1 cut(s)	1396
HindII	GTYRAC	1 cut(s)	1396
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	5 cut(s)	5, 46, 114, 323, 1013
HpaI	GTTAAC	1 cut(s)	1396
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	1396
Hpy188I	TCNGA	4 cut(s)	322, 721, 1142, 1296
Hpy8I	GTNNAC	1 cut(s)	1396
Hpy99I	CGWCG	2 cut(s)	688, 694
HpyAV	CCTTC	2 cut(s)	789, 1042
HpyCH4III	ACNGT	2 cut(s)	197, 681
HpyCH4V	TGCA	9 cut(s)	11, 733, 853, 992, 1073, 1094, 1159, 1237, 1332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 983, 1026, 1367
HpyF3I	CTNAG	5 cut(s)	467, 718, 748, 1178, 1295
KpnI	GGTACC	2 cut(s)	221, 903
Ksp22I	TGATCA	1 cut(s)	877
KspAI	GTTAAC	1 cut(s)	1396
Kzo9I	GATC	6 cut(s)	463, 617, 742, 877, 1273, 1291
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	42, 719
Lsp1109I	GCAGC	4 cut(s)	976, 998, 1228, 1348
LweI	GCATC	4 cut(s)	37, 597, 840, 1127
MabI	ACCWGGT	1 cut(s)	1164
MaeI	CTAG	2 cut(s)	249, 372
MaeIII	GTNAC	2 cut(s)	1014, 1342
MalI	GATC	6 cut(s)	465, 619, 744, 879, 1275, 1293
MboI	GATC	6 cut(s)	463, 617, 742, 877, 1273, 1291
MfeI	CAATTG	2 cut(s)	602, 1085
MflI	RGATCY	1 cut(s)	1291
MhlI	GDGCHC	2 cut(s)	306, 772
MlsI	TGGCCA	1 cut(s)	1402
MluNI	TGGCCA	1 cut(s)	1402
MlyI	GAGTC	2 cut(s)	14, 1022
MmeI	TCCRAC	3 cut(s)	91, 690, 990
Mox20I	TGGCCA	1 cut(s)	1402
MscI	TGGCCA	1 cut(s)	1402
MseI	TTAA	7 cut(s)	210, 294, 378, 510, 671, 1038, 1395
MslI	CAYNNNNRTG	1 cut(s)	1327
Msp20I	TGGCCA	1 cut(s)	1402
MspA1I	CMGCKG	2 cut(s)	989, 1349
MspCI	CTTAAG	1 cut(s)	1037
MspR9I	CCNGG	3 cut(s)	612, 954, 1166
MunI	CAATTG	2 cut(s)	602, 1085
MvaI	CCWGG	3 cut(s)	612, 954, 1166
MvnI	CGCG	1 cut(s)	1006
MwoI	GCNNNNNNNGC	4 cut(s)	34, 983, 1026, 1367
NdeII	GATC	6 cut(s)	463, 617, 742, 877, 1273, 1291
NlaIV	GGNNCC	5 cut(s)	131, 219, 715, 901, 1320
NmeAIII	GCCGAG	1 cut(s)	402
NmuCI	GTSAC	1 cut(s)	1014
NspI	RCATGY	2 cut(s)	125, 1336
PaeI	GCATGC	1 cut(s)	125
PagI	TCATGA	3 cut(s)	772, 874, 1276
PciSI	GCTCTTC	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	2 cut(s)	689, 1334
PfeI	GAWTC	3 cut(s)	46, 114, 323
PflFI	GACNNNGTC	1 cut(s)	493
PkrI	GCNGC	4 cut(s)	988, 991, 1218, 1363
PleI	GAGTC	2 cut(s)	13, 1021
PpsI	GAGTC	2 cut(s)	13, 1021
PshBI	ATTAAT	2 cut(s)	210, 510
PsiI	TTATAA	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	3 cut(s)	610, 952, 1164
PspFI	CCCAGC	2 cut(s)	132, 650
PspGI	CCWGG	3 cut(s)	610, 952, 1164
PspN4I	GGNNCC	5 cut(s)	131, 219, 715, 901, 1320
PspPI	GGNCC	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	1291
PsyI	GACNNNGTC	1 cut(s)	493
PvuII	CAGCTG	2 cut(s)	989, 1349
RsaI	GTAC	4 cut(s)	219, 901, 1125, 1354
RsaNI	GTAC	4 cut(s)	218, 900, 1124, 1353
RseI	CAYNNNNRTG	1 cut(s)	1327
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	7 cut(s)	210, 294, 378, 510, 671, 1038, 1395
SatI	GCNGC	4 cut(s)	987, 990, 1217, 1362
Sau3AI	GATC	6 cut(s)	463, 617, 742, 877, 1273, 1291
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	2 cut(s)	14, 1022
ScrFI	CCNGG	3 cut(s)	612, 954, 1166
SduI	GDGCHC	2 cut(s)	306, 772
SexAI	ACCWGGT	1 cut(s)	1164
SfaNI	GCATC	4 cut(s)	37, 597, 840, 1127
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	1327
SmlI	CTYRAG	3 cut(s)	485, 703, 1037
SmoI	CTYRAG	3 cut(s)	485, 703, 1037
SpeI	ACTAGT	1 cut(s)	371
SphI	GCATGC	1 cut(s)	125
SsiI	CCGC	1 cut(s)	1006
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	2 cut(s)	249, 372
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	3 cut(s)	610, 952, 1164
StyI	CCWWGG	1 cut(s)	799
TaaI	ACNGT	2 cut(s)	197, 681
TaqI	TCGA	2 cut(s)	758, 1170
TaqII	GACCGA	1 cut(s)	1124
TfiI	GAWTC	3 cut(s)	46, 114, 323
Tru1I	TTAA	7 cut(s)	210, 294, 378, 510, 671, 1038, 1395
Tru9I	TTAA	7 cut(s)	210, 294, 378, 510, 671, 1038, 1395
TscAI	CASTG	2 cut(s)	242, 1378
TseFI	GTSAC	1 cut(s)	1014
TseI	GCWGC	4 cut(s)	986, 989, 1216, 1361
Tsp45I	GTSAC	1 cut(s)	1014
TspDTI	ATGAA	7 cut(s)	306, 473, 513, 530, 945, 959, 1208
TspGWI	ACGGA	1 cut(s)	1111
TspRI	CASTG	2 cut(s)	242, 1378
Tth111I	GACNNNGTC	1 cut(s)	493
Vha464I	CTTAAG	1 cut(s)	1037
VpaK11BI	GGWCC	1 cut(s)	129
VspI	ATTAAT	2 cut(s)	210, 510
XapI	RAATTY	5 cut(s)	181, 338, 519, 592, 642
XceI	RCATGY	2 cut(s)	125, 1336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XspI	CTAG	2 cut(s)	249, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.