Rorug06G0306900

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007400
Physical Location & Seq
Reverse (-)
45810198 .. 45811072
875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0306900.1

Sequence Viewer

Length: 627 bp
ATGACCCCAGCAAACTCTGCAGGCTCTTCACAAGCAGTGCAAATAATGATAGGGAAGATAAAGTATGTTGGCAAATGTTCCACCCAAGTGAGGAAAGTGGCTTTGAACATTTTGGAGTTCATCAGTGAAGGACTGGGGATTGGATCAGAGTATTTCAAAGATGAAGTCAGCCAAGAATCGATTCTCTCAGTTAATCACTATCCACCTTGGCCAGACCCAAGTTTGACATTAGGATTAAGTAAACATTGTGACCCAAACCTCATCACAATTTTACTTCAAAGGGATGTAAATGGCCTTCAAGTTCTCGAGGATGGGGAATGGATTGGCGTGGAACCTCTTTCGCATGGACTAGTGGTTAACATAGGCTATCAGTTACAGATCATAAGTAATGGGAAGCTGAAGTGTGCAGAACATCGAGCAGTGATGAATTCAAGTAATGCTTGCACATCTGGTGCATATTTCATTGCGCCTTCCCAAGATTGCCACATACAACCTGCAACAACTCTTATCAGTGCAAGCAATCCCCAAGTCTATAAGAGCTTCCAATTCAAAGAGTTTCTTGCCAACTACTTAATGGATCAGGGCAATACCGAAGTTGTACTTGAGCCCTTTAAACTCCAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.79

Weight (kDa)

5.49

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 59 - 157 1.9e-26 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 502
AclWI GGATC 2 cut(s) 151, 585
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 419
AfaI GTAC 1 cut(s) 600
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 6 cut(s) 106, 157, 278, 299, 432, 550
AhlI ACTAGT 1 cut(s) 349
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 2 cut(s) 397, 540
AluI AGCT 2 cut(s) 397, 540
AlwI GGATC 2 cut(s) 151, 585
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 2 cut(s) 209, 292
ApoI RAATTY 1 cut(s) 427
ArsI GACNNNNNNTTYG 2 cut(s) 150, 182
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 469
AvaI CYCGRG 1 cut(s) 305
BalI TGGCCA 1 cut(s) 211
BanII GRGCYC 1 cut(s) 609
BarI GAAGNNNNNNTAC 2 cut(s) 279, 311
BccI CCATC 1 cut(s) 305
BcuI ACTAGT 1 cut(s) 349
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 18
BfuAI ACCTGC 1 cut(s) 502
BmeT110I CYCGRG 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 333
BmrI ACTGGG 1 cut(s) 143
BmuI ACTGGG 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 623
Bsa29I ATCGAT 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 462
BseCI ATCGAT 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 2 cut(s) 289, 316
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 138
BseYI CCCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 426
BshFI GGCC 2 cut(s) 211, 294
BshVI ATCGAT 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 90
BsnI GGCC 2 cut(s) 211, 294
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 3 cut(s) 143, 378, 577
BspANI GGCC 2 cut(s) 211, 294
BspCNI CTCAG 1 cut(s) 200
BspDI ATCGAT 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 333
BspMAI CTGCAG 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 2 cut(s) 151, 585
BspQI GCTCTTC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 462
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 3 cut(s) 143, 378, 577
BssT1I CCWWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 31
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 22, 442, 517
BstDEI CTNAG 2 cut(s) 187, 624
BstF5I GGATG 2 cut(s) 289, 316
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 3 cut(s) 146, 381, 580
BstMBI GATC 3 cut(s) 143, 378, 577
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 18
Bsu15I ATCGAT 1 cut(s) 179
BsuRI GGCC 2 cut(s) 211, 294
BsuTUI ATCGAT 1 cut(s) 179
BtsCI GGATG 2 cut(s) 289, 316
BtsI GCAGTG 2 cut(s) 42, 426
BtsIMutI CAGTG 4 cut(s) 42, 130, 426, 517
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 3 cut(s) 22, 442, 517
CfoI GCGC 1 cut(s) 469
ClaI ATCGAT 1 cut(s) 179
Csp6I GTAC 1 cut(s) 599
CviAII CATG 1 cut(s) 344
CviJI RGCY 9 cut(s) 24, 101, 171, 211, 294, 366, 397, 540, 607
CviKI_1 RGCY 9 cut(s) 24, 101, 171, 211, 294, 366, 397, 540, 607
CviQI GTAC 1 cut(s) 599
DdeI CTNAG 2 cut(s) 187, 624
DpnI GATC 3 cut(s) 145, 380, 579
DpnII GATC 3 cut(s) 143, 378, 577
DraI TTTAAA 1 cut(s) 613
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 206
Eco24I GRGCYC 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 1 cut(s) 347
FaiI YATR 7 cut(s) 66, 345, 362, 383, 457, 488, 534
FalI AAGNNNNNCTT 6 cut(s) 424, 456, 543, 575, 585, 617
FatI CATG 1 cut(s) 343
FokI GGATG 2 cut(s) 296, 323
FriOI GRGCYC 1 cut(s) 609
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 468
GsaI CCCAGC 1 cut(s) 11
HaeIII GGCC 2 cut(s) 211, 294
HhaI GCGC 1 cut(s) 469
Hin1II CATG 1 cut(s) 347
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 2 cut(s) 176, 181
HpaI GTTAAC 1 cut(s) 358
Hpy166II GTNNAC 2 cut(s) 242, 358
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 2 cut(s) 242, 358
HpyAV CCTTC 3 cut(s) 122, 305, 480
HpyCH4V TGCA 7 cut(s) 20, 40, 407, 444, 455, 497, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 187, 624
Hsp92II CATG 1 cut(s) 347
HspAI GCGC 1 cut(s) 467
KspAI GTTAAC 1 cut(s) 358
Kzo9I GATC 3 cut(s) 143, 378, 577
LguI GCTCTTC 1 cut(s) 31
LpnPI CCDG 7 cut(s) 6, 21, 119, 225, 435, 507, 566
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 2 cut(s) 248, 372
MalI GATC 3 cut(s) 145, 380, 579
MboI GATC 3 cut(s) 143, 378, 577
MboII GAAGA 2 cut(s) 18, 67
MhlI GDGCHC 1 cut(s) 609
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 3 cut(s) 267, 427, 545
MluNI TGGCCA 1 cut(s) 211
MnlI CCTC 4 cut(s) 84, 269, 301, 345
Mox20I TGGCCA 1 cut(s) 211
MroXI GAANNNNTTC 1 cut(s) 180
MscI TGGCCA 1 cut(s) 211
MseI TTAA 5 cut(s) 192, 236, 357, 572, 612
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 3 cut(s) 143, 378, 577
NlaIII CATG 1 cut(s) 347
NlaIV GGNNCC 1 cut(s) 333
NmuCI GTSAC 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 86
PaeR7I CTCGAG 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 176, 181
PspFI CCCAGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 333
PstI CTGCAG 1 cut(s) 22
RsaI GTAC 1 cut(s) 600
RsaNI GTAC 1 cut(s) 599
RseI CAYNNNNRTG 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 31
SaqAI TTAA 5 cut(s) 192, 236, 357, 572, 612
Sau3AI GATC 3 cut(s) 143, 378, 577
SduI GDGCHC 1 cut(s) 609
SetI ASST 6 cut(s) 208, 261, 337, 399, 496, 542
SfcI CTRYAG 1 cut(s) 18
Sfr274I CTCGAG 1 cut(s) 305
SlaI CTCGAG 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 305, 602
SmoI CTYRAG 2 cut(s) 305, 602
SpeI ACTAGT 1 cut(s) 349
Sse9I AATT 3 cut(s) 267, 427, 545
SspMI CTAG 1 cut(s) 350
StyI CCWWGG 1 cut(s) 206
TaqI TCGA 3 cut(s) 179, 306, 415
TasI AATT 3 cut(s) 267, 427, 545
TatI WGTACW 1 cut(s) 598
TfiI GAWTC 2 cut(s) 176, 181
Tru1I TTAA 5 cut(s) 192, 236, 357, 572, 612
Tru9I TTAA 5 cut(s) 192, 236, 357, 572, 612
TscAI CASTG 4 cut(s) 42, 130, 426, 517
TseFI GTSAC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 4 cut(s) 109, 177, 440, 451
TspRI CASTG 4 cut(s) 42, 130, 426, 517
XapI RAATTY 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 571
XhoI CTCGAG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.