FvH4_2g39400

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
28310778 .. 28315134
4357 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39400.t1

Sequence Viewer

Length: 1407 bp
ATGGAGTCTGCAAATCTCCATCACCAGCATCATCAGCTCCAAGAGAATCTTAGTCATCTCGGGTCTTCTTCTTCCTCTTCTTCTTTAGCTACTGCCCCATCTTACTATGGAGTTGGAATCAAGCATGCTTGGACCCAGCAGCCTACTATTACTGCCACAACCACTAATTTGAGCAACCCATCAAATTCAAGCTTCAACAGTAGTAGTTCTATTAATATGGTACCAGATTTGGGTTTTCACTGCTGGCCTCCTAGTAGTAATAATTTGAATAGAGCTGGAAGCAGTAGTAGTATTAAGGAAGAGCTCTCATCATCTTCATCAGATTCAACCTTTCCAAAATTTACACAAATGCTGACCAGCCCCTCTAGCACTAGTATTAACCTTGATGATGATGACCACCATTTTTCTACTCCTACAAGCCTCGGCCTTATAAAGAATGAGCAGAAAGAAATGATGATGAATGATCTCAGTGAAAAACTCTTGCTCAAGACCTTGTCTTCTTCTGGAATTAATCATCAAATTTCATTAGCTGGAGATCAACATCATCATCAATTCTACAGCTCAAATAACAACCATGTCCAGAATTTTACTCAATTGATGCCTGGGAGATCAGGAGGGCAATACTTCAGCCAAATTTATCCCAGCATAAATATTTCCAACTTAAACCAACAGTCATCGCCGTCGTTAACAATCTCAAGCTGCAGCTCCTTAAACATGAACTTGCAGGCTATGGATCTTTTAGCTTCTTCGAGATTCAGTACTCATGAACCTTATAATTCACACGATACCCTTGGCATATACAACAAGGAAATTAGGCATAACTCCTTTGGTCTTCAACAGATGCACCAATCAAGAGCAAATCATCATAGTCTGCTATCTTCTGGTGCCAATAGTAAAATATCTCCTTTTGAGAATGAAATCACAGAAGTGAAGCGACCCGGGAGTTTGATTGAGCCAAAGGCAACACAAGCAGCTGCACCTAAGAAATCGAGGTTGGAGTCACGCACTCCCTGCCCACCCCTTAAGGTTAGGAAGGAGAAGTTAGGAGATAGAATTGCAACTCTTCAGCAATTGGTTGCACCCTTCGGCAAGACCGACACAGCATCCGTACTGATGGAGGCAATCGGATACATCAAGTTCCTTCAAAATCAGGTCGAGACACTAAGCGTCCCATACATGAAGTCATCACGCGACAACAAGTCCTCTCAAGCAATGTTGCAAGCGGGTGTGGTAGATATAAATGGCTCAAATGGAGACCATGAGAGAAAGCGAGATCTGAGAAGTAGAGGGCTGTGTTTGGTGCCATTGTCGTGCATGTCGTATGTCACAGACGCTGCTGCCGCCACTGCTGGTGTTACTGGAAGCGTTAACTGGCCAAGCCCTAACTATGGTCATGGAGGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

469

Amino Acids

50.98

Weight (kDa)

7.79

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 431, 774
Acc65I GGTACC 1 cut(s) 220
AccB1I GGYRCC 3 cut(s) 220, 884, 1300
AccII CGCG 1 cut(s) 1191
AciI CCGC 2 cut(s) 1223, 1341
AclWI GGATC 1 cut(s) 741
AcoI YGGCCR 1 cut(s) 1373
AcsI RAATTY 5 cut(s) 184, 338, 519, 583, 633
AcuI CTGAAG 2 cut(s) 610, 1049
AfaI GTAC 3 cut(s) 222, 760, 1110
AfiI CCNNNNNNNGG 2 cut(s) 230, 1388
AflII CTTAAG 1 cut(s) 1022
AgsI TTSAA 6 cut(s) 189, 196, 268, 327, 836, 1145
AhdI GACNNNNNGTC 1 cut(s) 1198
AhlI ACTAGT 1 cut(s) 371
AjnI CCWGG 1 cut(s) 601
AjuI GAANNNNNNNTTGG 2 cut(s) 977, 1009
AleI CACNNNNGTG 1 cut(s) 926
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 1151, 1248
AlwI GGATC 1 cut(s) 741
AlwNI CAGNNNCTG 1 cut(s) 1334
Ama87I CYCGRG 2 cut(s) 59, 938
AoxI GGCC 3 cut(s) 245, 424, 1373
ApeKI GCWGC 7 cut(s) 139, 699, 702, 971, 974, 1334, 1337
ApoI RAATTY 5 cut(s) 184, 338, 519, 583, 633
AseI ATTAAT 2 cut(s) 213, 510
Asp718I GGTACC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 132
AsuC2I CCSGG 2 cut(s) 939, 940
AsuHPI GGTGA 1 cut(s) 14
AvaI CYCGRG 2 cut(s) 59, 938
AvaII GGWCC 1 cut(s) 132
BalI TGGCCA 1 cut(s) 1375
BanI GGYRCC 3 cut(s) 220, 884, 1300
BanII GRGCYC 1 cut(s) 306
BbsI GAAGAC 3 cut(s) 57, 489, 824
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 7 cut(s) 151, 686, 714, 961, 983, 1321, 1324
BccI CCATC 4 cut(s) 27, 106, 187, 1108
BceAI ACGGC 1 cut(s) 664
BciT130I CCWGG 1 cut(s) 603
BciVI GTATCC 1 cut(s) 1121
BcnI CCSGG 2 cut(s) 939, 940
BcoDI GTCTC 2 cut(s) 1151, 1248
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 3 cut(s) 252, 366, 372
BfmI CTRYAG 2 cut(s) 556, 700
BfrI CTTAAG 1 cut(s) 1022
BfuI GTATCC 1 cut(s) 1121
BglII AGATCT 1 cut(s) 1273
BisI GCNGC 8 cut(s) 140, 700, 703, 972, 975, 1335, 1338, 1341
BlsI GCNGC 8 cut(s) 141, 701, 704, 973, 976, 1336, 1339, 1342
BmcAI AGTACT 1 cut(s) 760
Bme1390I CCNGG 3 cut(s) 603, 939, 940
Bme18I GGWCC 1 cut(s) 132
BmeRI GACNNNNNGTC 1 cut(s) 1198
BmeT110I CYCGRG 2 cut(s) 59, 938
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 4 cut(s) 134, 222, 886, 1302
BmrFI CCNGG 3 cut(s) 603, 939, 940
BmsI GCATC 4 cut(s) 37, 588, 831, 1112
BpiI GAAGAC 3 cut(s) 57, 489, 824
BpmI CTGGAG 1 cut(s) 552
BpuEI CTTGAG 3 cut(s) 470, 679, 1191
BpuMI CCSGG 2 cut(s) 939, 940
BsaBI GATNNNNATC 1 cut(s) 540
BsaI GGTCTC 1 cut(s) 1248
BsaJI CCNNGG 4 cut(s) 421, 602, 790, 938
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 1388
Bse1I ACTGG 2 cut(s) 1363, 1376
Bse3DI GCAATG 1 cut(s) 1218
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 4 cut(s) 421, 602, 790, 938
BseGI GGATG 1 cut(s) 1103
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 230, 1388
BseMI GCAATG 1 cut(s) 1218
BseMII CTCAG 2 cut(s) 481, 1268
BseNI ACTGG 2 cut(s) 1363, 1376
BseXI GCAGC 7 cut(s) 151, 686, 714, 961, 983, 1321, 1324
BseYI CCCAGC 2 cut(s) 135, 641
BsgI GTGCAG 1 cut(s) 960
Bsh1236I CGCG 1 cut(s) 1191
BshFI GGCC 3 cut(s) 247, 426, 1375
BshNI GGYRCC 3 cut(s) 220, 884, 1300
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 2 cut(s) 59, 938
BsiSI CCGG 1 cut(s) 939
BslFI GGGAC 1 cut(s) 1154
BslI CCNNNNNNNGG 2 cut(s) 230, 1388
BsmAI GTCTC 2 cut(s) 1151, 1248
BsmFI GGGAC 1 cut(s) 1154
BsnI GGCC 3 cut(s) 247, 426, 1375
Bso31I GGTCTC 1 cut(s) 1248
BsoBI CYCGRG 2 cut(s) 59, 938
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 5 cut(s) 463, 535, 608, 733, 1273
BspACI CCGC 2 cut(s) 1223, 1341
BspANI GGCC 3 cut(s) 247, 426, 1375
BspCNI CTCAG 2 cut(s) 480, 1269
BspFNI CGCG 1 cut(s) 1191
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 4 cut(s) 134, 222, 886, 1302
BspMAI CTGCAG 1 cut(s) 704
BspPI GGATC 1 cut(s) 741
BspQI GCTCTTC 1 cut(s) 294
BspT107I GGYRCC 3 cut(s) 220, 884, 1300
BspTI CTTAAG 1 cut(s) 1022
BspTNI GGTCTC 1 cut(s) 1248
BsrDI GCAATG 1 cut(s) 1218
BsrI ACTGG 2 cut(s) 1363, 1376
BssECI CCNNGG 4 cut(s) 421, 602, 790, 938
BssMI GATC 5 cut(s) 463, 535, 608, 733, 1273
BssT1I CCWWGG 1 cut(s) 790
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 2 cut(s) 200, 672
Bst6I CTCTTC 3 cut(s) 82, 294, 1068
BstAFI CTTAAG 1 cut(s) 1022
BstAPI GCANNNNNTGC 1 cut(s) 1011
BstC8I GCNNGC 4 cut(s) 126, 245, 726, 1221
BstDEI CTNAG 5 cut(s) 50, 467, 981, 1163, 1277
BstF5I GGATG 1 cut(s) 1103
BstFNI CGCG 1 cut(s) 1191
BstKTI GATC 5 cut(s) 466, 538, 611, 736, 1276
BstMAI GTCTC 2 cut(s) 1151, 1248
BstMBI GATC 5 cut(s) 463, 535, 608, 733, 1273
BstMWI GCNNNNNNNGC 6 cut(s) 34, 366, 968, 1011, 1340, 1346
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 2 cut(s) 128, 1318
BstSCI CCNGG 3 cut(s) 601, 937, 938
BstSFI CTRYAG 2 cut(s) 556, 700
BstUI CGCG 1 cut(s) 1191
BstV1I GCAGC 7 cut(s) 151, 686, 714, 961, 983, 1321, 1324
BstV2I GAAGAC 3 cut(s) 57, 489, 824
BstX2I RGATCY 2 cut(s) 733, 1273
BstYI RGATCY 2 cut(s) 733, 1273
BsuI GTATCC 1 cut(s) 1121
BsuRI GGCC 3 cut(s) 247, 426, 1375
BtgZI GCGATG 1 cut(s) 660
BtsCI GGATG 1 cut(s) 1103
BtsI GCAGTG 2 cut(s) 238, 1344
BtsIMutI CAGTG 3 cut(s) 238, 475, 1344
Cac8I GCNNGC 4 cut(s) 126, 245, 726, 1221
CaiI CAGNNNCTG 1 cut(s) 1334
CciI TCATGA 1 cut(s) 763
Cfr13I GGNCC 1 cut(s) 132
Cfr9I CCCGGG 1 cut(s) 938
CseI GACGC 2 cut(s) 1156, 1340
Csp6I GTAC 3 cut(s) 221, 759, 1109
CviAII CATG 8 cut(s) 125, 575, 715, 764, 1177, 1259, 1315, 1394
CviQI GTAC 3 cut(s) 221, 759, 1109
DdeI CTNAG 5 cut(s) 50, 467, 981, 1163, 1277
DpnI GATC 5 cut(s) 465, 537, 610, 735, 1275
DpnII GATC 5 cut(s) 463, 535, 608, 733, 1273
DriI GACNNNNNGTC 1 cut(s) 1198
EaeI YGGCCR 1 cut(s) 1373
Eam1104I CTCTTC 3 cut(s) 82, 294, 1068
Eam1105I GACNNNNNGTC 1 cut(s) 1198
EarI CTCTTC 3 cut(s) 82, 294, 1068
Ecl136II GAGCTC 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 790
Eco24I GRGCYC 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 1248
Eco47I GGWCC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 2 cut(s) 610, 1049
Eco88I CYCGRG 2 cut(s) 59, 938
EcoICRI GAGCTC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 790
EcoT38I GRGCYC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 790
FaeI CATG 8 cut(s) 128, 578, 718, 767, 1180, 1262, 1318, 1397
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 1 cut(s) 1154
FatI CATG 8 cut(s) 124, 574, 714, 763, 1176, 1258, 1314, 1393
FauI CCCGC 1 cut(s) 1216
Fnu4HI GCNGC 8 cut(s) 140, 700, 703, 972, 975, 1335, 1338, 1341
FokI GGATG 1 cut(s) 1090
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 8 cut(s) 140, 700, 703, 972, 975, 1335, 1338, 1341
FspBI CTAG 3 cut(s) 252, 366, 372
GluI GCNGC 8 cut(s) 140, 700, 703, 972, 975, 1335, 1338, 1341
GsaI CCCAGC 2 cut(s) 139, 645
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 3 cut(s) 247, 426, 1375
HapII CCGG 1 cut(s) 939
HgaI GACGC 2 cut(s) 1156, 1340
Hin1II CATG 8 cut(s) 128, 578, 718, 767, 1180, 1262, 1318, 1397
HincII GTYRAC 2 cut(s) 687, 1369
HindII GTYRAC 2 cut(s) 687, 1369
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 6 cut(s) 5, 46, 117, 323, 753, 998
HpaI GTTAAC 2 cut(s) 687, 1369
HpaII CCGG 1 cut(s) 939
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 2 cut(s) 687, 1369
Hpy188I TCNGA 3 cut(s) 322, 1127, 1278
Hpy188III TCNNGA 8 cut(s) 487, 504, 580, 612, 750, 764, 852, 1156
Hpy8I GTNNAC 2 cut(s) 687, 1369
Hpy99I CGWCG 1 cut(s) 685
HpyAV CCTTC 3 cut(s) 1027, 1093, 1151
HpyCH4III ACNGT 2 cut(s) 200, 672
HpyCH4V TGCA 9 cut(s) 11, 702, 724, 844, 977, 1058, 1079, 1219, 1314
HpyF10VI GCNNNNNNNGC 6 cut(s) 34, 366, 968, 1011, 1340, 1346
HpyF3I CTNAG 5 cut(s) 50, 467, 981, 1163, 1277
Hsp92II CATG 8 cut(s) 128, 578, 718, 767, 1180, 1262, 1318, 1397
KpnI GGTACC 1 cut(s) 224
KspAI GTTAAC 2 cut(s) 687, 1369
Kzo9I GATC 5 cut(s) 463, 535, 608, 733, 1273
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 2 cut(s) 42, 710
Lsp1109I GCAGC 7 cut(s) 151, 686, 714, 961, 983, 1321, 1324
LweI GCATC 4 cut(s) 37, 588, 831, 1112
MaeI CTAG 3 cut(s) 252, 366, 372
MaeIII GTNAC 3 cut(s) 999, 1324, 1354
MalI GATC 5 cut(s) 465, 537, 610, 735, 1275
MboI GATC 5 cut(s) 463, 535, 608, 733, 1273
MfeI CAATTG 2 cut(s) 593, 1070
MflI RGATCY 2 cut(s) 733, 1273
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 1375
MluNI TGGCCA 1 cut(s) 1375
MlyI GAGTC 2 cut(s) 14, 1007
MmeI TCCRAC 3 cut(s) 94, 681, 975
Mox20I TGGCCA 1 cut(s) 1375
MscI TGGCCA 1 cut(s) 1375
MseI TTAA 9 cut(s) 213, 294, 378, 510, 662, 686, 710, 1023, 1368
MslI CAYNNNNRTG 2 cut(s) 926, 1309
Msp20I TGGCCA 1 cut(s) 1375
MspA1I CMGCKG 1 cut(s) 974
MspCI CTTAAG 1 cut(s) 1022
MspI CCGG 1 cut(s) 939
MspR9I CCNGG 3 cut(s) 603, 939, 940
MunI CAATTG 2 cut(s) 593, 1070
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 1 cut(s) 1191
MwoI GCNNNNNNNGC 6 cut(s) 34, 366, 968, 1011, 1340, 1346
NciI CCSGG 2 cut(s) 939, 940
NdeII GATC 5 cut(s) 463, 535, 608, 733, 1273
NlaIII CATG 8 cut(s) 128, 578, 718, 767, 1180, 1262, 1318, 1397
NlaIV GGNNCC 4 cut(s) 134, 222, 886, 1302
NmeAIII GCCGAG 1 cut(s) 402
NmuCI GTSAC 2 cut(s) 999, 1324
NspI RCATGY 2 cut(s) 128, 1318
OliI CACNNNNGTG 1 cut(s) 926
PaeI GCATGC 1 cut(s) 128
PagI TCATGA 1 cut(s) 763
PciSI GCTCTTC 1 cut(s) 294
PcsI WCGNNNNNNNCGW 2 cut(s) 1092, 1316
PfeI GAWTC 4 cut(s) 46, 117, 323, 753
PflFI GACNNNGTC 1 cut(s) 493
PkrI GCNGC 8 cut(s) 141, 701, 704, 973, 976, 1336, 1339, 1342
PleI GAGTC 2 cut(s) 13, 1006
PpsI GAGTC 2 cut(s) 13, 1006
PshBI ATTAAT 2 cut(s) 213, 510
PsiI TTATAA 2 cut(s) 431, 774
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 601
PspFI CCCAGC 2 cut(s) 135, 641
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 4 cut(s) 134, 222, 886, 1302
PspPI GGNCC 1 cut(s) 132
PstI CTGCAG 1 cut(s) 704
PstNI CAGNNNCTG 1 cut(s) 1334
PsuI RGATCY 2 cut(s) 733, 1273
PsyI GACNNNGTC 1 cut(s) 493
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 3 cut(s) 222, 760, 1110
RsaNI GTAC 3 cut(s) 221, 759, 1109
RseI CAYNNNNRTG 2 cut(s) 926, 1309
SacI GAGCTC 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 9 cut(s) 213, 294, 378, 510, 662, 686, 710, 1023, 1368
SatI GCNGC 8 cut(s) 140, 700, 703, 972, 975, 1335, 1338, 1341
Sau3AI GATC 5 cut(s) 463, 535, 608, 733, 1273
Sau96I GGNCC 1 cut(s) 132
ScaI AGTACT 1 cut(s) 760
SchI GAGTC 2 cut(s) 14, 1007
ScrFI CCNGG 3 cut(s) 603, 939, 940
SduI GDGCHC 1 cut(s) 306
SfaNI GCATC 4 cut(s) 37, 588, 831, 1112
SfcI CTRYAG 2 cut(s) 556, 700
SinI GGWCC 1 cut(s) 132
SmaI CCCGGG 1 cut(s) 940
SmiMI CAYNNNNRTG 2 cut(s) 926, 1309
SmlI CTYRAG 4 cut(s) 485, 694, 1022, 1206
SmoI CTYRAG 4 cut(s) 485, 694, 1022, 1206
SpeI ACTAGT 1 cut(s) 371
SphI GCATGC 1 cut(s) 128
SsiI CCGC 2 cut(s) 1223, 1341
SspI AATATT 1 cut(s) 652
SspMI CTAG 3 cut(s) 252, 366, 372
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 3 cut(s) 601, 937, 938
StyI CCWWGG 1 cut(s) 790
TaaI ACNGT 2 cut(s) 200, 672
TaqI TCGA 3 cut(s) 749, 989, 1155
TaqII GACCGA 1 cut(s) 1109
TatI WGTACW 1 cut(s) 758
TauI GCSGC 1 cut(s) 1343
TfiI GAWTC 4 cut(s) 46, 117, 323, 753
Tru1I TTAA 9 cut(s) 213, 294, 378, 510, 662, 686, 710, 1023, 1368
Tru9I TTAA 9 cut(s) 213, 294, 378, 510, 662, 686, 710, 1023, 1368
TscAI CASTG 3 cut(s) 245, 475, 1351
TseFI GTSAC 2 cut(s) 999, 1324
TseI GCWGC 7 cut(s) 139, 699, 702, 971, 974, 1334, 1337
Tsp45I GTSAC 2 cut(s) 999, 1324
TspDTI ATGAA 7 cut(s) 306, 473, 513, 731, 780, 930, 1193
TspGWI ACGGA 1 cut(s) 1096
TspMI CCCGGG 1 cut(s) 938
TspRI CASTG 3 cut(s) 245, 475, 1351
Tth111I GACNNNGTC 1 cut(s) 493
Vha464I CTTAAG 1 cut(s) 1022
VpaK11BI GGWCC 1 cut(s) 132
VspI ATTAAT 2 cut(s) 213, 510
XapI RAATTY 5 cut(s) 184, 338, 519, 583, 633
XceI RCATGY 2 cut(s) 128, 1318
XmaI CCCGGG 1 cut(s) 938
XspI CTAG 3 cut(s) 252, 366, 372
ZrmI AGTACT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.