transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G27660 |
| fragaria_vesca | FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 |
| malus_domestica | MD08G1026300.v1.1 MD15G1023100.v1.1 |
| prunus_persica | Prupe.1G375000_v2.0.a1 Prupe.1G375000_v2.0.a1 |
| pyrus_communis | pycom08g02040 |
| rosa_chinensis | RchiOBHm_Chr6g0301601 |
| rosa_laevigata | RLG00000011240 |
| rosa_multiflora | Rmu_ssc0000452.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00166620 |
| rosa_rugosa | Rorug06G0306800 Rorug06G0306900 Rorug06G0307000 Rorug06G0307100 Rorug06G0307100 |
| rosa_samantha | Rh6AG420000 Rh6BG426100 Rh6CG433000 Rh6DG419400 |
| rosa_wichuraiana | Rw6G036310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 431, 774 |
| Acc65I | GGTACC | 1 cut(s) | 220 |
| AccB1I | GGYRCC | 3 cut(s) | 220, 884, 1300 |
| AccII | CGCG | 1 cut(s) | 1191 |
| AciI | CCGC | 2 cut(s) | 1223, 1341 |
| AclWI | GGATC | 1 cut(s) | 741 |
| AcoI | YGGCCR | 1 cut(s) | 1373 |
| AcsI | RAATTY | 5 cut(s) | 184, 338, 519, 583, 633 |
| AcuI | CTGAAG | 2 cut(s) | 610, 1049 |
| AfaI | GTAC | 3 cut(s) | 222, 760, 1110 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 230, 1388 |
| AflII | CTTAAG | 1 cut(s) | 1022 |
| AgsI | TTSAA | 6 cut(s) | 189, 196, 268, 327, 836, 1145 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1198 |
| AhlI | ACTAGT | 1 cut(s) | 371 |
| AjnI | CCWGG | 1 cut(s) | 601 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 977, 1009 |
| AleI | CACNNNNGTG | 1 cut(s) | 926 |
| Alw21I | GWGCWC | 1 cut(s) | 306 |
| Alw26I | GTCTC | 2 cut(s) | 1151, 1248 |
| AlwI | GGATC | 1 cut(s) | 741 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1334 |
| Ama87I | CYCGRG | 2 cut(s) | 59, 938 |
| AoxI | GGCC | 3 cut(s) | 245, 424, 1373 |
| ApeKI | GCWGC | 7 cut(s) | 139, 699, 702, 971, 974, 1334, 1337 |
| ApoI | RAATTY | 5 cut(s) | 184, 338, 519, 583, 633 |
| AseI | ATTAAT | 2 cut(s) | 213, 510 |
| Asp718I | GGTACC | 1 cut(s) | 220 |
| AspS9I | GGNCC | 1 cut(s) | 132 |
| AsuC2I | CCSGG | 2 cut(s) | 939, 940 |
| AsuHPI | GGTGA | 1 cut(s) | 14 |
| AvaI | CYCGRG | 2 cut(s) | 59, 938 |
| AvaII | GGWCC | 1 cut(s) | 132 |
| BalI | TGGCCA | 1 cut(s) | 1375 |
| BanI | GGYRCC | 3 cut(s) | 220, 884, 1300 |
| BanII | GRGCYC | 1 cut(s) | 306 |
| BbsI | GAAGAC | 3 cut(s) | 57, 489, 824 |
| Bbv12I | GWGCWC | 1 cut(s) | 306 |
| BbvI | GCAGC | 7 cut(s) | 151, 686, 714, 961, 983, 1321, 1324 |
| BccI | CCATC | 4 cut(s) | 27, 106, 187, 1108 |
| BceAI | ACGGC | 1 cut(s) | 664 |
| BciT130I | CCWGG | 1 cut(s) | 603 |
| BciVI | GTATCC | 1 cut(s) | 1121 |
| BcnI | CCSGG | 2 cut(s) | 939, 940 |
| BcoDI | GTCTC | 2 cut(s) | 1151, 1248 |
| BcuI | ACTAGT | 1 cut(s) | 371 |
| BfaI | CTAG | 3 cut(s) | 252, 366, 372 |
| BfmI | CTRYAG | 2 cut(s) | 556, 700 |
| BfrI | CTTAAG | 1 cut(s) | 1022 |
| BfuI | GTATCC | 1 cut(s) | 1121 |
| BglII | AGATCT | 1 cut(s) | 1273 |
| BisI | GCNGC | 8 cut(s) | 140, 700, 703, 972, 975, 1335, 1338, 1341 |
| BlsI | GCNGC | 8 cut(s) | 141, 701, 704, 973, 976, 1336, 1339, 1342 |
| BmcAI | AGTACT | 1 cut(s) | 760 |
| Bme1390I | CCNGG | 3 cut(s) | 603, 939, 940 |
| Bme18I | GGWCC | 1 cut(s) | 132 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1198 |
| BmeT110I | CYCGRG | 2 cut(s) | 59, 938 |
| BmgT120I | GGNCC | 1 cut(s) | 132 |
| BmiI | GGNNCC | 4 cut(s) | 134, 222, 886, 1302 |
| BmrFI | CCNGG | 3 cut(s) | 603, 939, 940 |
| BmsI | GCATC | 4 cut(s) | 37, 588, 831, 1112 |
| BpiI | GAAGAC | 3 cut(s) | 57, 489, 824 |
| BpmI | CTGGAG | 1 cut(s) | 552 |
| BpuEI | CTTGAG | 3 cut(s) | 470, 679, 1191 |
| BpuMI | CCSGG | 2 cut(s) | 939, 940 |
| BsaBI | GATNNNNATC | 1 cut(s) | 540 |
| BsaI | GGTCTC | 1 cut(s) | 1248 |
| BsaJI | CCNNGG | 4 cut(s) | 421, 602, 790, 938 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 230, 1388 |
| Bse1I | ACTGG | 2 cut(s) | 1363, 1376 |
| Bse3DI | GCAATG | 1 cut(s) | 1218 |
| Bse8I | GATNNNNATC | 1 cut(s) | 540 |
| BseBI | CCWGG | 1 cut(s) | 603 |
| BseDI | CCNNGG | 4 cut(s) | 421, 602, 790, 938 |
| BseGI | GGATG | 1 cut(s) | 1103 |
| BseJI | GATNNNNATC | 1 cut(s) | 540 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 230, 1388 |
| BseMI | GCAATG | 1 cut(s) | 1218 |
| BseMII | CTCAG | 2 cut(s) | 481, 1268 |
| BseNI | ACTGG | 2 cut(s) | 1363, 1376 |
| BseXI | GCAGC | 7 cut(s) | 151, 686, 714, 961, 983, 1321, 1324 |
| BseYI | CCCAGC | 2 cut(s) | 135, 641 |
| BsgI | GTGCAG | 1 cut(s) | 960 |
| Bsh1236I | CGCG | 1 cut(s) | 1191 |
| BshFI | GGCC | 3 cut(s) | 247, 426, 1375 |
| BshNI | GGYRCC | 3 cut(s) | 220, 884, 1300 |
| BsiHKAI | GWGCWC | 1 cut(s) | 306 |
| BsiHKCI | CYCGRG | 2 cut(s) | 59, 938 |
| BsiSI | CCGG | 1 cut(s) | 939 |
| BslFI | GGGAC | 1 cut(s) | 1154 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 230, 1388 |
| BsmAI | GTCTC | 2 cut(s) | 1151, 1248 |
| BsmFI | GGGAC | 1 cut(s) | 1154 |
| BsnI | GGCC | 3 cut(s) | 247, 426, 1375 |
| Bso31I | GGTCTC | 1 cut(s) | 1248 |
| BsoBI | CYCGRG | 2 cut(s) | 59, 938 |
| Bsp1286I | GDGCHC | 1 cut(s) | 306 |
| Bsp143I | GATC | 5 cut(s) | 463, 535, 608, 733, 1273 |
| BspACI | CCGC | 2 cut(s) | 1223, 1341 |
| BspANI | GGCC | 3 cut(s) | 247, 426, 1375 |
| BspCNI | CTCAG | 2 cut(s) | 480, 1269 |
| BspFNI | CGCG | 1 cut(s) | 1191 |
| BspHI | TCATGA | 1 cut(s) | 763 |
| BspLI | GGNNCC | 4 cut(s) | 134, 222, 886, 1302 |
| BspMAI | CTGCAG | 1 cut(s) | 704 |
| BspPI | GGATC | 1 cut(s) | 741 |
| BspQI | GCTCTTC | 1 cut(s) | 294 |
| BspT107I | GGYRCC | 3 cut(s) | 220, 884, 1300 |
| BspTI | CTTAAG | 1 cut(s) | 1022 |
| BspTNI | GGTCTC | 1 cut(s) | 1248 |
| BsrDI | GCAATG | 1 cut(s) | 1218 |
| BsrI | ACTGG | 2 cut(s) | 1363, 1376 |
| BssECI | CCNNGG | 4 cut(s) | 421, 602, 790, 938 |
| BssMI | GATC | 5 cut(s) | 463, 535, 608, 733, 1273 |
| BssT1I | CCWWGG | 1 cut(s) | 790 |
| Bst2UI | CCWGG | 1 cut(s) | 603 |
| Bst4CI | ACNGT | 2 cut(s) | 200, 672 |
| Bst6I | CTCTTC | 3 cut(s) | 82, 294, 1068 |
| BstAFI | CTTAAG | 1 cut(s) | 1022 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1011 |
| BstC8I | GCNNGC | 4 cut(s) | 126, 245, 726, 1221 |
| BstDEI | CTNAG | 5 cut(s) | 50, 467, 981, 1163, 1277 |
| BstF5I | GGATG | 1 cut(s) | 1103 |
| BstFNI | CGCG | 1 cut(s) | 1191 |
| BstKTI | GATC | 5 cut(s) | 466, 538, 611, 736, 1276 |
| BstMAI | GTCTC | 2 cut(s) | 1151, 1248 |
| BstMBI | GATC | 5 cut(s) | 463, 535, 608, 733, 1273 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 34, 366, 968, 1011, 1340, 1346 |
| BstNI | CCWGG | 1 cut(s) | 603 |
| BstNSI | RCATGY | 2 cut(s) | 128, 1318 |
| BstSCI | CCNGG | 3 cut(s) | 601, 937, 938 |
| BstSFI | CTRYAG | 2 cut(s) | 556, 700 |
| BstUI | CGCG | 1 cut(s) | 1191 |
| BstV1I | GCAGC | 7 cut(s) | 151, 686, 714, 961, 983, 1321, 1324 |
| BstV2I | GAAGAC | 3 cut(s) | 57, 489, 824 |
| BstX2I | RGATCY | 2 cut(s) | 733, 1273 |
| BstYI | RGATCY | 2 cut(s) | 733, 1273 |
| BsuI | GTATCC | 1 cut(s) | 1121 |
| BsuRI | GGCC | 3 cut(s) | 247, 426, 1375 |
| BtgZI | GCGATG | 1 cut(s) | 660 |
| BtsCI | GGATG | 1 cut(s) | 1103 |
| BtsI | GCAGTG | 2 cut(s) | 238, 1344 |
| BtsIMutI | CAGTG | 3 cut(s) | 238, 475, 1344 |
| Cac8I | GCNNGC | 4 cut(s) | 126, 245, 726, 1221 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1334 |
| CciI | TCATGA | 1 cut(s) | 763 |
| Cfr13I | GGNCC | 1 cut(s) | 132 |
| Cfr9I | CCCGGG | 1 cut(s) | 938 |
| CseI | GACGC | 2 cut(s) | 1156, 1340 |
| Csp6I | GTAC | 3 cut(s) | 221, 759, 1109 |
| CviAII | CATG | 8 cut(s) | 125, 575, 715, 764, 1177, 1259, 1315, 1394 |
| CviQI | GTAC | 3 cut(s) | 221, 759, 1109 |
| DdeI | CTNAG | 5 cut(s) | 50, 467, 981, 1163, 1277 |
| DpnI | GATC | 5 cut(s) | 465, 537, 610, 735, 1275 |
| DpnII | GATC | 5 cut(s) | 463, 535, 608, 733, 1273 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1198 |
| EaeI | YGGCCR | 1 cut(s) | 1373 |
| Eam1104I | CTCTTC | 3 cut(s) | 82, 294, 1068 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1198 |
| EarI | CTCTTC | 3 cut(s) | 82, 294, 1068 |
| Ecl136II | GAGCTC | 1 cut(s) | 304 |
| Eco130I | CCWWGG | 1 cut(s) | 790 |
| Eco24I | GRGCYC | 1 cut(s) | 306 |
| Eco31I | GGTCTC | 1 cut(s) | 1248 |
| Eco47I | GGWCC | 1 cut(s) | 132 |
| Eco53kI | GAGCTC | 1 cut(s) | 304 |
| Eco57I | CTGAAG | 2 cut(s) | 610, 1049 |
| Eco88I | CYCGRG | 2 cut(s) | 59, 938 |
| EcoICRI | GAGCTC | 1 cut(s) | 304 |
| EcoRII | CCWGG | 1 cut(s) | 601 |
| EcoT14I | CCWWGG | 1 cut(s) | 790 |
| EcoT38I | GRGCYC | 1 cut(s) | 306 |
| ErhI | CCWWGG | 1 cut(s) | 790 |
| FaeI | CATG | 8 cut(s) | 128, 578, 718, 767, 1180, 1262, 1318, 1397 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 33, 65 |
| FaqI | GGGAC | 1 cut(s) | 1154 |
| FatI | CATG | 8 cut(s) | 124, 574, 714, 763, 1176, 1258, 1314, 1393 |
| FauI | CCCGC | 1 cut(s) | 1216 |
| Fnu4HI | GCNGC | 8 cut(s) | 140, 700, 703, 972, 975, 1335, 1338, 1341 |
| FokI | GGATG | 1 cut(s) | 1090 |
| FriOI | GRGCYC | 1 cut(s) | 306 |
| Fsp4HI | GCNGC | 8 cut(s) | 140, 700, 703, 972, 975, 1335, 1338, 1341 |
| FspBI | CTAG | 3 cut(s) | 252, 366, 372 |
| GluI | GCNGC | 8 cut(s) | 140, 700, 703, 972, 975, 1335, 1338, 1341 |
| GsaI | CCCAGC | 2 cut(s) | 139, 645 |
| GsuI | CTGGAG | 1 cut(s) | 552 |
| HaeIII | GGCC | 3 cut(s) | 247, 426, 1375 |
| HapII | CCGG | 1 cut(s) | 939 |
| HgaI | GACGC | 2 cut(s) | 1156, 1340 |
| Hin1II | CATG | 8 cut(s) | 128, 578, 718, 767, 1180, 1262, 1318, 1397 |
| HincII | GTYRAC | 2 cut(s) | 687, 1369 |
| HindII | GTYRAC | 2 cut(s) | 687, 1369 |
| HindIII | AAGCTT | 1 cut(s) | 190 |
| HinfI | GANTC | 6 cut(s) | 5, 46, 117, 323, 753, 998 |
| HpaI | GTTAAC | 2 cut(s) | 687, 1369 |
| HpaII | CCGG | 1 cut(s) | 939 |
| HphI | GGTGA | 1 cut(s) | 14 |
| Hpy166II | GTNNAC | 2 cut(s) | 687, 1369 |
| Hpy188I | TCNGA | 3 cut(s) | 322, 1127, 1278 |
| Hpy188III | TCNNGA | 8 cut(s) | 487, 504, 580, 612, 750, 764, 852, 1156 |
| Hpy8I | GTNNAC | 2 cut(s) | 687, 1369 |
| Hpy99I | CGWCG | 1 cut(s) | 685 |
| HpyAV | CCTTC | 3 cut(s) | 1027, 1093, 1151 |
| HpyCH4III | ACNGT | 2 cut(s) | 200, 672 |
| HpyCH4V | TGCA | 9 cut(s) | 11, 702, 724, 844, 977, 1058, 1079, 1219, 1314 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 34, 366, 968, 1011, 1340, 1346 |
| HpyF3I | CTNAG | 5 cut(s) | 50, 467, 981, 1163, 1277 |
| Hsp92II | CATG | 8 cut(s) | 128, 578, 718, 767, 1180, 1262, 1318, 1397 |
| KpnI | GGTACC | 1 cut(s) | 224 |
| KspAI | GTTAAC | 2 cut(s) | 687, 1369 |
| Kzo9I | GATC | 5 cut(s) | 463, 535, 608, 733, 1273 |
| LguI | GCTCTTC | 1 cut(s) | 294 |
| LmnI | GCTCC | 2 cut(s) | 42, 710 |
| Lsp1109I | GCAGC | 7 cut(s) | 151, 686, 714, 961, 983, 1321, 1324 |
| LweI | GCATC | 4 cut(s) | 37, 588, 831, 1112 |
| MaeI | CTAG | 3 cut(s) | 252, 366, 372 |
| MaeIII | GTNAC | 3 cut(s) | 999, 1324, 1354 |
| MalI | GATC | 5 cut(s) | 465, 537, 610, 735, 1275 |
| MboI | GATC | 5 cut(s) | 463, 535, 608, 733, 1273 |
| MfeI | CAATTG | 2 cut(s) | 593, 1070 |
| MflI | RGATCY | 2 cut(s) | 733, 1273 |
| MhlI | GDGCHC | 1 cut(s) | 306 |
| MlsI | TGGCCA | 1 cut(s) | 1375 |
| MluNI | TGGCCA | 1 cut(s) | 1375 |
| MlyI | GAGTC | 2 cut(s) | 14, 1007 |
| MmeI | TCCRAC | 3 cut(s) | 94, 681, 975 |
| Mox20I | TGGCCA | 1 cut(s) | 1375 |
| MscI | TGGCCA | 1 cut(s) | 1375 |
| MseI | TTAA | 9 cut(s) | 213, 294, 378, 510, 662, 686, 710, 1023, 1368 |
| MslI | CAYNNNNRTG | 2 cut(s) | 926, 1309 |
| Msp20I | TGGCCA | 1 cut(s) | 1375 |
| MspA1I | CMGCKG | 1 cut(s) | 974 |
| MspCI | CTTAAG | 1 cut(s) | 1022 |
| MspI | CCGG | 1 cut(s) | 939 |
| MspR9I | CCNGG | 3 cut(s) | 603, 939, 940 |
| MunI | CAATTG | 2 cut(s) | 593, 1070 |
| MvaI | CCWGG | 1 cut(s) | 603 |
| MvnI | CGCG | 1 cut(s) | 1191 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 34, 366, 968, 1011, 1340, 1346 |
| NciI | CCSGG | 2 cut(s) | 939, 940 |
| NdeII | GATC | 5 cut(s) | 463, 535, 608, 733, 1273 |
| NlaIII | CATG | 8 cut(s) | 128, 578, 718, 767, 1180, 1262, 1318, 1397 |
| NlaIV | GGNNCC | 4 cut(s) | 134, 222, 886, 1302 |
| NmeAIII | GCCGAG | 1 cut(s) | 402 |
| NmuCI | GTSAC | 2 cut(s) | 999, 1324 |
| NspI | RCATGY | 2 cut(s) | 128, 1318 |
| OliI | CACNNNNGTG | 1 cut(s) | 926 |
| PaeI | GCATGC | 1 cut(s) | 128 |
| PagI | TCATGA | 1 cut(s) | 763 |
| PciSI | GCTCTTC | 1 cut(s) | 294 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1092, 1316 |
| PfeI | GAWTC | 4 cut(s) | 46, 117, 323, 753 |
| PflFI | GACNNNGTC | 1 cut(s) | 493 |
| PkrI | GCNGC | 8 cut(s) | 141, 701, 704, 973, 976, 1336, 1339, 1342 |
| PleI | GAGTC | 2 cut(s) | 13, 1006 |
| PpsI | GAGTC | 2 cut(s) | 13, 1006 |
| PshBI | ATTAAT | 2 cut(s) | 213, 510 |
| PsiI | TTATAA | 2 cut(s) | 431, 774 |
| Psp124BI | GAGCTC | 1 cut(s) | 306 |
| Psp6I | CCWGG | 1 cut(s) | 601 |
| PspFI | CCCAGC | 2 cut(s) | 135, 641 |
| PspGI | CCWGG | 1 cut(s) | 601 |
| PspN4I | GGNNCC | 4 cut(s) | 134, 222, 886, 1302 |
| PspPI | GGNCC | 1 cut(s) | 132 |
| PstI | CTGCAG | 1 cut(s) | 704 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1334 |
| PsuI | RGATCY | 2 cut(s) | 733, 1273 |
| PsyI | GACNNNGTC | 1 cut(s) | 493 |
| PvuII | CAGCTG | 1 cut(s) | 974 |
| RsaI | GTAC | 3 cut(s) | 222, 760, 1110 |
| RsaNI | GTAC | 3 cut(s) | 221, 759, 1109 |
| RseI | CAYNNNNRTG | 2 cut(s) | 926, 1309 |
| SacI | GAGCTC | 1 cut(s) | 306 |
| SapI | GCTCTTC | 1 cut(s) | 294 |
| SaqAI | TTAA | 9 cut(s) | 213, 294, 378, 510, 662, 686, 710, 1023, 1368 |
| SatI | GCNGC | 8 cut(s) | 140, 700, 703, 972, 975, 1335, 1338, 1341 |
| Sau3AI | GATC | 5 cut(s) | 463, 535, 608, 733, 1273 |
| Sau96I | GGNCC | 1 cut(s) | 132 |
| ScaI | AGTACT | 1 cut(s) | 760 |
| SchI | GAGTC | 2 cut(s) | 14, 1007 |
| ScrFI | CCNGG | 3 cut(s) | 603, 939, 940 |
| SduI | GDGCHC | 1 cut(s) | 306 |
| SfaNI | GCATC | 4 cut(s) | 37, 588, 831, 1112 |
| SfcI | CTRYAG | 2 cut(s) | 556, 700 |
| SinI | GGWCC | 1 cut(s) | 132 |
| SmaI | CCCGGG | 1 cut(s) | 940 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 926, 1309 |
| SmlI | CTYRAG | 4 cut(s) | 485, 694, 1022, 1206 |
| SmoI | CTYRAG | 4 cut(s) | 485, 694, 1022, 1206 |
| SpeI | ACTAGT | 1 cut(s) | 371 |
| SphI | GCATGC | 1 cut(s) | 128 |
| SsiI | CCGC | 2 cut(s) | 1223, 1341 |
| SspI | AATATT | 1 cut(s) | 652 |
| SspMI | CTAG | 3 cut(s) | 252, 366, 372 |
| SstI | GAGCTC | 1 cut(s) | 306 |
| StyD4I | CCNGG | 3 cut(s) | 601, 937, 938 |
| StyI | CCWWGG | 1 cut(s) | 790 |
| TaaI | ACNGT | 2 cut(s) | 200, 672 |
| TaqI | TCGA | 3 cut(s) | 749, 989, 1155 |
| TaqII | GACCGA | 1 cut(s) | 1109 |
| TatI | WGTACW | 1 cut(s) | 758 |
| TauI | GCSGC | 1 cut(s) | 1343 |
| TfiI | GAWTC | 4 cut(s) | 46, 117, 323, 753 |
| Tru1I | TTAA | 9 cut(s) | 213, 294, 378, 510, 662, 686, 710, 1023, 1368 |
| Tru9I | TTAA | 9 cut(s) | 213, 294, 378, 510, 662, 686, 710, 1023, 1368 |
| TscAI | CASTG | 3 cut(s) | 245, 475, 1351 |
| TseFI | GTSAC | 2 cut(s) | 999, 1324 |
| TseI | GCWGC | 7 cut(s) | 139, 699, 702, 971, 974, 1334, 1337 |
| Tsp45I | GTSAC | 2 cut(s) | 999, 1324 |
| TspDTI | ATGAA | 7 cut(s) | 306, 473, 513, 731, 780, 930, 1193 |
| TspGWI | ACGGA | 1 cut(s) | 1096 |
| TspMI | CCCGGG | 1 cut(s) | 938 |
| TspRI | CASTG | 3 cut(s) | 245, 475, 1351 |
| Tth111I | GACNNNGTC | 1 cut(s) | 493 |
| Vha464I | CTTAAG | 1 cut(s) | 1022 |
| VpaK11BI | GGWCC | 1 cut(s) | 132 |
| VspI | ATTAAT | 2 cut(s) | 213, 510 |
| XapI | RAATTY | 5 cut(s) | 184, 338, 519, 583, 633 |
| XceI | RCATGY | 2 cut(s) | 128, 1318 |
| XmaI | CCCGGG | 1 cut(s) | 938 |
| XspI | CTAG | 3 cut(s) | 252, 366, 372 |
| ZrmI | AGTACT | 1 cut(s) | 760 |