Prupe.1G375000_v2.0.a1

transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
34034935 .. 34039208
4274 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G375000.2

Sequence Viewer

Length: 1377 bp
ATGGAGTCTGCAAATCTCCATCACCAACATCACCAGCTCCAAGAGAATCTTGTTGGGTCTTCTTCTTTAGCAGCTACCCCATCTTGCTATGCAGTTGGAACCAAGCATGCTTGGACCCCTTCTGCCACACTGAGCAGTAGTGGTAACTCATCAAATTCAGGCTTGGATCCCCTCAACAGTTCCATGGTACCAGACTTGGGCTTTCACTGGCTCACCAATATTACTAGTGAGCATCAGTCTCCCCATGACCTTGCTAAAATTAAGGAAGAGCTCACTTCATCATCCTCCTCAGATCATCATCACCATCATCATAATTCCTTCCCAAAATTAACAGAAATGCTGACCAGCGCCGCCGCGTCGACTAGTATAGATCATGATCAGTATTACCAATTTATGAAGAATGAGGAAAAAAACCAATTGATCATGAATGACCTCAGTGAGAAGCTCTTGCTCAAGACTTTGTCTTCTGGCTGTCAAATAAATAGTATTATCAATCCTCACCACCACCAAATTTCATCAGCTGGAGAGTTCTACTCAAATGATGATCATCATCATCTACTCCACAATTCTAATCTAATTGGAGGCGTGCCGCCGGGGATGCCTAGCAGATCAGGAGGCCACTTCAGCCAAATTTATCCAAGCATAAATGTTTCCAACTTGAACCGGTCGTTGTCTTCGTCGTCAATCTCAAACTCTAGCTTGGACATGAACTTGCAGGCCATGGATCTCTTAGGCGCTTCTGCAAGATTTAGTACCGGGACTAGTAGTAGTTTTAGCACGCAGCCTAATTCACATGATACCCTTGGCTTATACAAGGAAACGCATGATTCGTTTGCTACTCTTCAACAGATGCATCAATCAACTGACCCTCATAGGCTATCGTGCGGCAATAATAATAAGATATCATCTTTCGACAATGAAATAACAGAGGTGAAGCGACCCGGCAGTTCCATCGAGCCAAAGGTAACTCAAGCAACTGCACCAAAGAAATCGCGGTTGGAGTCGCGCACTGCATGCCCACCCTTCAAGGTTAGGAAGGAGAAATTGGGAGATAGAATCGCAGCTCTTCAGCAATTGGTGGCACCCTTTGGAAAGACAGACACAGCATCCGTTCTGATGGAGGCTATCGGATACATCAAATTCCTTCAAAACCAGGTCGAGACCCTAAGCGTCCCATATATGAAGTCATCACGCAACAAATCCTCTAAAACAATGCAAGGGGGTGTGACAGAGATCAATGAAAATGACGAAACAAAGCGAGATCTCAGAAGTAGAGGATTGTGCCTCGTTCCTTTGTCGTGCATGTCTTATGTGACAAGTGACATTGGTGAGGGTGGAAGCATTTGGCCAGCGCCTAACTTTGGGGGAGGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

459

Amino Acids

49.93

Weight (kDa)

6.52

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 187
AccB1I GGYRCC 2 cut(s) 187, 1081
AccI GTMKAC 1 cut(s) 359
AccII CGCG 3 cut(s) 356, 994, 1006
AciI CCGC 5 cut(s) 351, 354, 590, 885, 994
AclWI GGATC 3 cut(s) 161, 174, 732
AcoI YGGCCR 1 cut(s) 1346
AcsI RAATTY 4 cut(s) 154, 510, 630, 1139
AcuI CTGAAG 2 cut(s) 607, 1052
AfaI GTAC 2 cut(s) 189, 754
AfiI CCNNNNNNNGG 2 cut(s) 197, 1361
AgeI ACCGGT 1 cut(s) 663
AgsI TTSAA 4 cut(s) 661, 845, 1027, 1148
AhlI ACTAGT 3 cut(s) 224, 362, 761
AjnI CCWGG 1 cut(s) 1152
AjuI GAANNNNNNNTTGG 4 cut(s) 980, 1012, 1028, 1060
AluBI AGCT 7 cut(s) 37, 74, 271, 445, 521, 699, 1064
AluI AGCT 7 cut(s) 37, 74, 271, 445, 521, 699, 1064
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 2 cut(s) 243, 1154
AlwI GGATC 3 cut(s) 161, 174, 732
AoxI GGCC 3 cut(s) 616, 717, 1346
ApeKI GCWGC 3 cut(s) 71, 781, 1061
ApoI RAATTY 4 cut(s) 154, 510, 630, 1139
AsiGI ACCGGT 1 cut(s) 663
Asp718I GGTACC 1 cut(s) 187
AspLEI GCGC 4 cut(s) 350, 737, 1008, 1354
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 3 cut(s) 594, 757, 942
AsuHPI GGTGA 7 cut(s) 14, 23, 205, 293, 491, 943, 1340
AvaII GGWCC 1 cut(s) 114
BalI TGGCCA 1 cut(s) 1348
BamHI GGATCC 1 cut(s) 166
BanI GGYRCC 2 cut(s) 187, 1081
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 3 cut(s) 51, 456, 666
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 83, 793, 1073
BccI CCATC 5 cut(s) 27, 88, 312, 959, 1111
BcgI CGANNNNNNTGC 2 cut(s) 934, 968
BciT130I CCWGG 1 cut(s) 1154
BciVI GTATCC 1 cut(s) 1124
BclI TGATCA 3 cut(s) 376, 420, 544
BcnI CCSGG 3 cut(s) 594, 757, 942
BcoDI GTCTC 2 cut(s) 243, 1154
BcuI ACTAGT 3 cut(s) 224, 362, 761
BfaI CTAG 5 cut(s) 225, 363, 603, 696, 762
BfoI RGCGCY 3 cut(s) 351, 738, 1355
BfuI GTATCC 1 cut(s) 1124
BglII AGATCT 1 cut(s) 1261
BisI GCNGC 7 cut(s) 72, 351, 354, 590, 782, 886, 1062
BlsI GCNGC 7 cut(s) 73, 352, 355, 591, 783, 887, 1063
Bme1390I CCNGG 4 cut(s) 594, 757, 942, 1154
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 5 cut(s) 100, 116, 168, 189, 1083
BmrFI CCNGG 4 cut(s) 594, 757, 942, 1154
BmsI GCATC 5 cut(s) 241, 588, 840, 862, 1115
BpiI GAAGAC 3 cut(s) 51, 456, 666
BplI GAGNNNNNCTC 2 cut(s) 518, 550
BpmI CTGGAG 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 1166
BpuEI CTTGAG 2 cut(s) 437, 954
BpuMI CCSGG 3 cut(s) 594, 757, 942
BsaBI GATNNNNATC 4 cut(s) 297, 375, 546, 549
BsaI GGTCTC 1 cut(s) 1154
BsaJI CCNNGG 4 cut(s) 183, 593, 720, 802
BsaWI WCCGGW 1 cut(s) 663
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 1361
Bse118I RCCGGY 1 cut(s) 663
Bse1I ACTGG 1 cut(s) 212
Bse8I GATNNNNATC 4 cut(s) 297, 375, 546, 549
BseBI CCWGG 1 cut(s) 1154
BseDI CCNNGG 4 cut(s) 183, 593, 720, 802
BseGI GGATG 3 cut(s) 281, 603, 1106
BseJI GATNNNNATC 4 cut(s) 297, 375, 546, 549
BseLI CCNNNNNNNGG 2 cut(s) 197, 1361
BseMII CTCAG 4 cut(s) 122, 303, 448, 1279
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 277
BseXI GCAGC 3 cut(s) 83, 793, 1073
BsgI GTGCAG 1 cut(s) 963
Bsh1236I CGCG 3 cut(s) 356, 994, 1006
Bsh1285I CGRYCG 1 cut(s) 668
BshFI GGCC 3 cut(s) 618, 719, 1348
BshNI GGYRCC 2 cut(s) 187, 1081
BshTI ACCGGT 1 cut(s) 663
BsiEI CGRYCG 1 cut(s) 668
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 4 cut(s) 593, 664, 756, 942
BslFI GGGAC 2 cut(s) 772, 1157
BslI CCNNNNNNNGG 2 cut(s) 197, 1361
BsmAI GTCTC 2 cut(s) 243, 1154
BsmFI GGGAC 2 cut(s) 772, 1157
BsnI GGCC 3 cut(s) 618, 719, 1348
Bso31I GGTCTC 1 cut(s) 1154
Bsp1286I GDGCHC 1 cut(s) 273
Bsp19I CCATGG 2 cut(s) 183, 720
BspACI CCGC 5 cut(s) 351, 354, 590, 885, 994
BspANI GGCC 3 cut(s) 618, 719, 1348
BspCNI CTCAG 4 cut(s) 123, 302, 447, 1278
BspFNI CGCG 3 cut(s) 356, 994, 1006
BspHI TCATGA 2 cut(s) 373, 423
BspLI GGNNCC 5 cut(s) 100, 116, 168, 189, 1083
BspPI GGATC 3 cut(s) 161, 174, 732
BspQI GCTCTTC 2 cut(s) 261, 1071
BspT107I GGYRCC 2 cut(s) 187, 1081
BspTNI GGTCTC 1 cut(s) 1154
BsrFI RCCGGY 1 cut(s) 663
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 663
BssECI CCNNGG 4 cut(s) 183, 593, 720, 802
BssT1I CCWWGG 3 cut(s) 183, 720, 802
Bst2UI CCWGG 1 cut(s) 1154
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 3 cut(s) 261, 846, 1071
BstAPI GCANNNNNTGC 1 cut(s) 1014
BstC8I GCNNGC 6 cut(s) 108, 587, 717, 779, 1015, 1350
BstDEI CTNAG 6 cut(s) 131, 289, 434, 730, 1166, 1265
BstDSI CCRYGG 2 cut(s) 183, 720
BstF5I GGATG 3 cut(s) 281, 603, 1106
BstFNI CGCG 3 cut(s) 356, 994, 1006
BstH2I RGCGCY 3 cut(s) 351, 738, 1355
BstHHI GCGC 4 cut(s) 350, 737, 1008, 1354
BstMAI GTCTC 2 cut(s) 243, 1154
BstMCI CGRYCG 1 cut(s) 668
BstMWI GCNNNNNNNGC 3 cut(s) 598, 624, 1014
BstNI CCWGG 1 cut(s) 1154
BstNSI RCATGY 3 cut(s) 110, 1017, 1306
BstSCI CCNGG 4 cut(s) 592, 755, 940, 1152
BstUI CGCG 3 cut(s) 356, 994, 1006
BstV1I GCAGC 3 cut(s) 83, 793, 1073
BstV2I GAAGAC 3 cut(s) 51, 456, 666
BstX2I RGATCY 3 cut(s) 166, 724, 1261
BstYI RGATCY 3 cut(s) 166, 724, 1261
BsuI GTATCC 1 cut(s) 1124
BsuRI GGCC 3 cut(s) 618, 719, 1348
BtgI CCRYGG 2 cut(s) 183, 720
BtsCI GGATG 3 cut(s) 281, 603, 1106
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 4 cut(s) 128, 205, 442, 1008
Cac8I GCNNGC 6 cut(s) 108, 587, 717, 779, 1015, 1350
CciI TCATGA 2 cut(s) 373, 423
CfoI GCGC 4 cut(s) 350, 737, 1008, 1354
Cfr10I RCCGGY 1 cut(s) 663
Cfr13I GGNCC 1 cut(s) 114
CseI GACGC 2 cut(s) 345, 1159
CsiI ACCWGGT 1 cut(s) 1152
Csp6I GTAC 2 cut(s) 188, 753
CspAI ACCGGT 1 cut(s) 663
CviQI GTAC 2 cut(s) 188, 753
DdeI CTNAG 6 cut(s) 131, 289, 434, 730, 1166, 1265
EaeI YGGCCR 1 cut(s) 1346
Eam1104I CTCTTC 3 cut(s) 261, 846, 1071
EarI CTCTTC 3 cut(s) 261, 846, 1071
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 3 cut(s) 183, 720, 802
Eco24I GRGCYC 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 1154
Eco32I GATATC 1 cut(s) 903
Eco47I GGWCC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 607, 1052
EcoICRI GAGCTC 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 1152
EcoRV GATATC 1 cut(s) 903
EcoT14I CCWWGG 3 cut(s) 183, 720, 802
EcoT22I ATGCAT 1 cut(s) 855
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 3 cut(s) 183, 720, 802
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 2 cut(s) 772, 1157
FbaI TGATCA 3 cut(s) 376, 420, 544
FblI GTMKAC 1 cut(s) 359
Fnu4HI GCNGC 7 cut(s) 72, 351, 354, 590, 782, 886, 1062
FokI GGATG 3 cut(s) 268, 610, 1093
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 7 cut(s) 72, 351, 354, 590, 782, 886, 1062
FspBI CTAG 5 cut(s) 225, 363, 603, 696, 762
GlaI GCGC 4 cut(s) 349, 736, 1007, 1353
GluI GCNGC 7 cut(s) 72, 351, 354, 590, 782, 886, 1062
GsuI CTGGAG 1 cut(s) 543
HaeII RGCGCY 3 cut(s) 351, 738, 1355
HaeIII GGCC 3 cut(s) 618, 719, 1348
HapII CCGG 4 cut(s) 593, 664, 756, 942
HgaI GACGC 2 cut(s) 345, 1159
HhaI GCGC 4 cut(s) 350, 737, 1008, 1354
Hin6I GCGC 4 cut(s) 348, 735, 1006, 1352
HinP1I GCGC 4 cut(s) 348, 735, 1006, 1352
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 5 cut(s) 5, 46, 827, 1001, 1056
HpaII CCGG 4 cut(s) 593, 664, 756, 942
HphI GGTGA 7 cut(s) 14, 23, 205, 293, 491, 943, 1340
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 4 cut(s) 292, 1116, 1130, 1268
Hpy188III TCNNGA 5 cut(s) 374, 424, 454, 612, 1159
Hpy8I GTNNAC 1 cut(s) 360
Hpy99I CGWCG 2 cut(s) 361, 682
HpyAV CCTTC 5 cut(s) 129, 328, 1030, 1033, 1154
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 9 cut(s) 11, 92, 715, 743, 853, 980, 1013, 1216, 1302
HpyF10VI GCNNNNNNNGC 3 cut(s) 598, 624, 1014
HpyF3I CTNAG 6 cut(s) 131, 289, 434, 730, 1166, 1265
HspAI GCGC 4 cut(s) 348, 735, 1006, 1352
KpnI GGTACC 1 cut(s) 191
Ksp22I TGATCA 3 cut(s) 376, 420, 544
LguI GCTCTTC 2 cut(s) 261, 1071
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 3 cut(s) 83, 793, 1073
LweI GCATC 5 cut(s) 241, 588, 840, 862, 1115
MabI ACCWGGT 1 cut(s) 1152
MaeI CTAG 5 cut(s) 225, 363, 603, 696, 762
MaeIII GTNAC 5 cut(s) 143, 964, 1225, 1312, 1319
MboII GAAGA 8 cut(s) 51, 54, 278, 409, 456, 666, 833, 1058
MfeI CAATTG 2 cut(s) 416, 1073
MflI RGATCY 3 cut(s) 166, 724, 1261
MhlI GDGCHC 1 cut(s) 273
MlsI TGGCCA 1 cut(s) 1348
MluNI TGGCCA 1 cut(s) 1348
MlyI GAGTC 2 cut(s) 14, 1010
MmeI TCCRAC 3 cut(s) 76, 678, 978
Mox20I TGGCCA 1 cut(s) 1348
Mph1103I ATGCAT 1 cut(s) 855
MscI TGGCCA 1 cut(s) 1348
MseI TTAA 3 cut(s) 261, 329, 1375
Msp20I TGGCCA 1 cut(s) 1348
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 4 cut(s) 593, 664, 756, 942
MspR9I CCNGG 4 cut(s) 594, 757, 942, 1154
MunI CAATTG 2 cut(s) 416, 1073
MvaI CCWGG 1 cut(s) 1154
MvnI CGCG 3 cut(s) 356, 994, 1006
MwoI GCNNNNNNNGC 3 cut(s) 598, 624, 1014
NciI CCSGG 3 cut(s) 594, 757, 942
NcoI CCATGG 2 cut(s) 183, 720
NlaIV GGNNCC 5 cut(s) 100, 116, 168, 189, 1083
NmuCI GTSAC 3 cut(s) 1225, 1312, 1319
NsiI ATGCAT 1 cut(s) 855
NspI RCATGY 3 cut(s) 110, 1017, 1306
PaeI GCATGC 2 cut(s) 110, 1017
PagI TCATGA 2 cut(s) 373, 423
PciSI GCTCTTC 2 cut(s) 261, 1071
PcsI WCGNNNNNNNCGW 2 cut(s) 674, 827
PfeI GAWTC 3 cut(s) 46, 827, 1056
PflFI GACNNNGTC 1 cut(s) 460
PinAI ACCGGT 1 cut(s) 663
PkrI GCNGC 7 cut(s) 73, 352, 355, 591, 783, 887, 1063
PleI GAGTC 2 cut(s) 13, 1009
PpsI GAGTC 2 cut(s) 13, 1009
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 1152
PspGI CCWGG 1 cut(s) 1152
PspN4I GGNNCC 5 cut(s) 100, 116, 168, 189, 1083
PspPI GGNCC 1 cut(s) 114
PsuI RGATCY 3 cut(s) 166, 724, 1261
PsyI GACNNNGTC 1 cut(s) 460
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 2 cut(s) 189, 754
RsaNI GTAC 2 cut(s) 188, 753
SacI GAGCTC 1 cut(s) 273
SalI GTCGAC 1 cut(s) 358
SapI GCTCTTC 2 cut(s) 261, 1071
SaqAI TTAA 3 cut(s) 261, 329, 1375
SatI GCNGC 7 cut(s) 72, 351, 354, 590, 782, 886, 1062
Sau96I GGNCC 1 cut(s) 114
SchI GAGTC 2 cut(s) 14, 1010
ScrFI CCNGG 4 cut(s) 594, 757, 942, 1154
SduI GDGCHC 1 cut(s) 273
SexAI ACCWGGT 1 cut(s) 1152
SfaNI GCATC 5 cut(s) 241, 588, 840, 862, 1115
SinI GGWCC 1 cut(s) 114
SmlI CTYRAG 2 cut(s) 452, 969
SmoI CTYRAG 2 cut(s) 452, 969
SpeI ACTAGT 3 cut(s) 224, 362, 761
SphI GCATGC 2 cut(s) 110, 1017
SsiI CCGC 5 cut(s) 351, 354, 590, 885, 994
SspI AATATT 1 cut(s) 220
SspMI CTAG 5 cut(s) 225, 363, 603, 696, 762
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 4 cut(s) 592, 755, 940, 1152
StyI CCWWGG 3 cut(s) 183, 720, 802
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 4 cut(s) 359, 912, 954, 1158
TauI GCSGC 4 cut(s) 353, 356, 592, 888
TfiI GAWTC 3 cut(s) 46, 827, 1056
Tru1I TTAA 3 cut(s) 261, 329, 1375
Tru9I TTAA 3 cut(s) 261, 329, 1375
TscAI CASTG 4 cut(s) 135, 212, 442, 1015
TseFI GTSAC 3 cut(s) 1225, 1312, 1319
TseI GCWGC 3 cut(s) 71, 781, 1061
Tsp45I GTSAC 3 cut(s) 1225, 1312, 1319
TspDTI ATGAA 8 cut(s) 267, 410, 440, 504, 722, 933, 1196, 1254
TspGWI ACGGA 1 cut(s) 1099
TspRI CASTG 4 cut(s) 135, 212, 442, 1015
Tth111I GACNNNGTC 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 114
XapI RAATTY 4 cut(s) 154, 510, 630, 1139
XceI RCATGY 3 cut(s) 110, 1017, 1306
XmiI GTMKAC 1 cut(s) 359
XspI CTAG 5 cut(s) 225, 363, 603, 696, 762
Zsp2I ATGCAT 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.