RchiOBHm_Chr6g0301601

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0007400
Physical Location & Seq
Reverse (-)
61951888 .. 61956169
4282 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27089

Sequence Viewer

Length: 1434 bp
ATGGAGTCTGCAAATCTCCATCACCAGCATCATCAGCTCCAAGAGAATCTTGGTCATCTCGGGTCTTCTTCTTCCTCTTCTTTAGCTACTGCCCCATCTTACTATGGAGTTGGAATCAAGCATGCTTGGACCCAGCCTACTACTACTACTACTAACACCACTAATTTGAGCAACCCATCAAATTCAAGCTTCAACAGTAGTAGTTCTATTAATATGGTACCAGATTTGGGTTTTCACTGCTGGCCTCCTAGCATTAGTAATAATTTGAATAGAGCTGGAAGCAGTAGTAGTATTAAGGAAGAGCTCTCATCATCTTCATCAGATTCAACCTTTCCAAAATTTACACAAATGCTGACCAGCCCCTCCACCACTAGTATTAATCTTGATGATGATGACTACCACTTTCCTACTCCTACAAGCCTCGGCCTTATAAAGAATGAGCAGAAAGAAATGATGATGAATGATCTCAGTGAAAAACTCTTGCTCAAGACCTTGTCCTCTTCTGGAATTAATCATCAAATTTCATTAGCTGGAGATTATCATCATCATCATCATCAACAATTTTACAGCTCAAATAACACCCATGTCCAGAATTTTACTCAATTGATGCCTGGGAGATCAGGAGGGCAATACTTCAGCCAAATTTATCCCAGCATAAATATTTCCAACTTAAACCAACAGTCGTCGCCGTCGTCAGCAATCTCAAGCTGTGGCTCCTCAGACATGAGCTTACAGGCTATTGATCTCTTAGCTTCTTCGAGATTTAGTGCTCATGAGCCTTCTAATTCACATGATACCCTTGGCATATACAACAAGGAAATTAGGCATAATTCCTTTGGTCTTCAACAGATGCACCAATCAAGAACAAATCATCATGATCATAGTCTGCTATCTTGTGGTACCAATAGTAAAATATCGTCTTTTGAGAATGAAATAACAGAAGTGAAGCGACCTGGCAGTTTGATTGAGCCAAAGGCAACACAAGCAGCTGCACCAAAGAAATCGCGGTTGGAGTCACGCACTCCCTGCCCACCCCTTAAGGTTAGGAAGGAGAAATTAGGAGATAGAATTGCAACTCTTCAGCAATTGGTTGCACCCTTTGGCAAGACCGACACAGCATCCGTACTGATGGAGGCTATCGGATACATCAAGTTCCTGCAAAACCAGGTCGAGACACTAAGCGTCCCATACATGAAGTCATCATCACGCAACAACAAGCCCTCTAAAGCAATGTTGCAAAGGGGAGTGATAGAGATAAATGGCTCAAATGGAGATCATGAGAGAAAGCGAGATCTGAGAAGTAGAGGGCTGTGTTTGGTGCCATTGTCGTGCATGTCGTATGTCACAGCTGGTACTGACGCTGCTAATGCCACTGCTGGTGTTTCTGGAAGCGTTAACTGGCCAAGCCCTAACTATGGTCATGGAGGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

477

Amino Acids

51.98

Weight (kDa)

8.15

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
Acc65I GGTACC 2 cut(s) 217, 899
AccB1I GGYRCC 3 cut(s) 217, 899, 1318
AccII CGCG 1 cut(s) 1006
AciI CCGC 1 cut(s) 1006
AcoI YGGCCR 1 cut(s) 1400
AcsI RAATTY 5 cut(s) 181, 338, 519, 592, 642
AcuI CTGAAG 2 cut(s) 619, 1064
AfaI GTAC 4 cut(s) 219, 901, 1125, 1354
AfiI CCNNNNNNNGG 2 cut(s) 227, 1415
AflII CTTAAG 1 cut(s) 1037
AgsI TTSAA 5 cut(s) 186, 193, 268, 327, 845
AhlI ACTAGT 1 cut(s) 371
AjnI CCWGG 3 cut(s) 610, 952, 1164
AjuI GAANNNNNNNTTGG 2 cut(s) 992, 1024
Alw21I GWGCWC 2 cut(s) 306, 772
Alw26I GTCTC 1 cut(s) 1166
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 3 cut(s) 242, 424, 1400
ApeKI GCWGC 3 cut(s) 986, 989, 1361
ApoI RAATTY 5 cut(s) 181, 338, 519, 592, 642
AseI ATTAAT 3 cut(s) 210, 378, 510
Asp718I GGTACC 2 cut(s) 217, 899
AspS9I GGNCC 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 1 cut(s) 129
BalI TGGCCA 1 cut(s) 1402
BanI GGYRCC 3 cut(s) 217, 899, 1318
BanII GRGCYC 1 cut(s) 306
BbsI GAAGAC 2 cut(s) 57, 833
Bbv12I GWGCWC 2 cut(s) 306, 772
BbvI GCAGC 3 cut(s) 976, 998, 1348
BccI CCATC 4 cut(s) 27, 103, 184, 1123
BceAI ACGGC 1 cut(s) 673
BciT130I CCWGG 3 cut(s) 612, 954, 1166
BciVI GTATCC 1 cut(s) 1136
BclI TGATCA 1 cut(s) 877
BcoDI GTCTC 1 cut(s) 1166
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 2 cut(s) 249, 372
BfrI CTTAAG 1 cut(s) 1037
BfuI GTATCC 1 cut(s) 1136
BglII AGATCT 1 cut(s) 1291
BisI GCNGC 3 cut(s) 987, 990, 1362
BlsI GCNGC 3 cut(s) 988, 991, 1363
Bme1390I CCNGG 3 cut(s) 612, 954, 1166
Bme18I GGWCC 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 129
BmiI GGNNCC 5 cut(s) 131, 219, 715, 901, 1320
BmrFI CCNGG 3 cut(s) 612, 954, 1166
BmsI GCATC 4 cut(s) 37, 597, 840, 1127
BpiI GAAGAC 2 cut(s) 57, 833
BpmI CTGGAG 1 cut(s) 552
BpuEI CTTGAG 2 cut(s) 470, 688
BsaBI GATNNNNATC 1 cut(s) 540
BsaJI CCNNGG 3 cut(s) 421, 611, 799
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 1415
Bse1I ACTGG 1 cut(s) 1403
Bse3DI GCAATG 1 cut(s) 1236
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 3 cut(s) 612, 954, 1166
BseDI CCNNGG 3 cut(s) 421, 611, 799
BseGI GGATG 1 cut(s) 1118
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 227, 1415
BseMI GCAATG 1 cut(s) 1236
BseMII CTCAG 3 cut(s) 481, 732, 1286
BseNI ACTGG 1 cut(s) 1403
BseRI GAGGAG 1 cut(s) 706
BseXI GCAGC 3 cut(s) 976, 998, 1348
BseYI CCCAGC 2 cut(s) 132, 650
BsgI GTGCAG 1 cut(s) 975
Bsh1236I CGCG 1 cut(s) 1006
BshFI GGCC 3 cut(s) 244, 426, 1402
BshNI GGYRCC 3 cut(s) 217, 899, 1318
BsiHKAI GWGCWC 2 cut(s) 306, 772
BsiHKCI CYCGRG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 1169
BslI CCNNNNNNNGG 2 cut(s) 227, 1415
BsmAI GTCTC 1 cut(s) 1166
BsmFI GGGAC 1 cut(s) 1169
BsnI GGCC 3 cut(s) 244, 426, 1402
BsoBI CYCGRG 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 306, 772
Bsp143I GATC 6 cut(s) 463, 617, 742, 877, 1273, 1291
BspACI CCGC 1 cut(s) 1006
BspANI GGCC 3 cut(s) 244, 426, 1402
BspCNI CTCAG 3 cut(s) 480, 731, 1287
BspFNI CGCG 1 cut(s) 1006
BspHI TCATGA 3 cut(s) 772, 874, 1276
BspLI GGNNCC 5 cut(s) 131, 219, 715, 901, 1320
BspQI GCTCTTC 1 cut(s) 294
BspT107I GGYRCC 3 cut(s) 217, 899, 1318
BspTI CTTAAG 1 cut(s) 1037
BsrDI GCAATG 1 cut(s) 1236
BsrI ACTGG 1 cut(s) 1403
BssECI CCNNGG 3 cut(s) 421, 611, 799
BssMI GATC 6 cut(s) 463, 617, 742, 877, 1273, 1291
BssT1I CCWWGG 1 cut(s) 799
Bst2UI CCWGG 3 cut(s) 612, 954, 1166
Bst4CI ACNGT 2 cut(s) 197, 681
Bst6I CTCTTC 4 cut(s) 82, 294, 505, 1083
BstAFI CTTAAG 1 cut(s) 1037
BstAPI GCANNNNNTGC 1 cut(s) 1026
BstC8I GCNNGC 2 cut(s) 123, 242
BstDEI CTNAG 5 cut(s) 467, 718, 748, 1178, 1295
BstF5I GGATG 1 cut(s) 1118
BstFNI CGCG 1 cut(s) 1006
BstKTI GATC 6 cut(s) 466, 620, 745, 880, 1276, 1294
BstMAI GTCTC 1 cut(s) 1166
BstMBI GATC 6 cut(s) 463, 617, 742, 877, 1273, 1291
BstMWI GCNNNNNNNGC 4 cut(s) 34, 983, 1026, 1367
BstNI CCWGG 3 cut(s) 612, 954, 1166
BstNSI RCATGY 2 cut(s) 125, 1336
BstSCI CCNGG 3 cut(s) 610, 952, 1164
BstUI CGCG 1 cut(s) 1006
BstV1I GCAGC 3 cut(s) 976, 998, 1348
BstV2I GAAGAC 2 cut(s) 57, 833
BstX2I RGATCY 1 cut(s) 1291
BstYI RGATCY 1 cut(s) 1291
BsuI GTATCC 1 cut(s) 1136
BsuRI GGCC 3 cut(s) 244, 426, 1402
BtsCI GGATG 1 cut(s) 1118
BtsI GCAGTG 2 cut(s) 235, 1371
BtsIMutI CAGTG 3 cut(s) 235, 475, 1371
Cac8I GCNNGC 2 cut(s) 123, 242
CciI TCATGA 3 cut(s) 772, 874, 1276
Cfr13I GGNCC 1 cut(s) 129
CseI GACGC 2 cut(s) 1171, 1367
CsiI ACCWGGT 1 cut(s) 1164
Csp6I GTAC 4 cut(s) 218, 900, 1124, 1353
CviQI GTAC 4 cut(s) 218, 900, 1124, 1353
DdeI CTNAG 5 cut(s) 467, 718, 748, 1178, 1295
DpnI GATC 6 cut(s) 465, 619, 744, 879, 1275, 1293
DpnII GATC 6 cut(s) 463, 617, 742, 877, 1273, 1291
EaeI YGGCCR 1 cut(s) 1400
Eam1104I CTCTTC 4 cut(s) 82, 294, 505, 1083
EarI CTCTTC 4 cut(s) 82, 294, 505, 1083
Ecl136II GAGCTC 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 799
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 2 cut(s) 619, 1064
Eco88I CYCGRG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 304
EcoRII CCWGG 3 cut(s) 610, 952, 1164
EcoT14I CCWWGG 1 cut(s) 799
EcoT38I GRGCYC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 799
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 1 cut(s) 1169
FbaI TGATCA 1 cut(s) 877
Fnu4HI GCNGC 3 cut(s) 987, 990, 1362
FokI GGATG 1 cut(s) 1105
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 3 cut(s) 987, 990, 1362
FspBI CTAG 2 cut(s) 249, 372
GluI GCNGC 3 cut(s) 987, 990, 1362
GsaI CCCAGC 2 cut(s) 136, 654
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 3 cut(s) 244, 426, 1402
HgaI GACGC 2 cut(s) 1171, 1367
HincII GTYRAC 1 cut(s) 1396
HindII GTYRAC 1 cut(s) 1396
HindIII AAGCTT 1 cut(s) 187
HinfI GANTC 5 cut(s) 5, 46, 114, 323, 1013
HpaI GTTAAC 1 cut(s) 1396
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 1396
Hpy188I TCNGA 4 cut(s) 322, 721, 1142, 1296
Hpy8I GTNNAC 1 cut(s) 1396
Hpy99I CGWCG 2 cut(s) 688, 694
HpyAV CCTTC 2 cut(s) 789, 1042
HpyCH4III ACNGT 2 cut(s) 197, 681
HpyCH4V TGCA 8 cut(s) 11, 853, 992, 1073, 1094, 1159, 1237, 1332
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 983, 1026, 1367
HpyF3I CTNAG 5 cut(s) 467, 718, 748, 1178, 1295
KpnI GGTACC 2 cut(s) 221, 903
Ksp22I TGATCA 1 cut(s) 877
KspAI GTTAAC 1 cut(s) 1396
Kzo9I GATC 6 cut(s) 463, 617, 742, 877, 1273, 1291
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 2 cut(s) 42, 719
Lsp1109I GCAGC 3 cut(s) 976, 998, 1348
LweI GCATC 4 cut(s) 37, 597, 840, 1127
MabI ACCWGGT 1 cut(s) 1164
MaeI CTAG 2 cut(s) 249, 372
MaeIII GTNAC 2 cut(s) 1014, 1342
MalI GATC 6 cut(s) 465, 619, 744, 879, 1275, 1293
MboI GATC 6 cut(s) 463, 617, 742, 877, 1273, 1291
MfeI CAATTG 2 cut(s) 602, 1085
MflI RGATCY 1 cut(s) 1291
MhlI GDGCHC 2 cut(s) 306, 772
MlsI TGGCCA 1 cut(s) 1402
MluNI TGGCCA 1 cut(s) 1402
MlyI GAGTC 2 cut(s) 14, 1022
MmeI TCCRAC 3 cut(s) 91, 690, 990
Mox20I TGGCCA 1 cut(s) 1402
MscI TGGCCA 1 cut(s) 1402
MseI TTAA 7 cut(s) 210, 294, 378, 510, 671, 1038, 1395
MslI CAYNNNNRTG 1 cut(s) 1327
Msp20I TGGCCA 1 cut(s) 1402
MspA1I CMGCKG 2 cut(s) 989, 1349
MspCI CTTAAG 1 cut(s) 1037
MspR9I CCNGG 3 cut(s) 612, 954, 1166
MunI CAATTG 2 cut(s) 602, 1085
MvaI CCWGG 3 cut(s) 612, 954, 1166
MvnI CGCG 1 cut(s) 1006
MwoI GCNNNNNNNGC 4 cut(s) 34, 983, 1026, 1367
NdeII GATC 6 cut(s) 463, 617, 742, 877, 1273, 1291
NlaIV GGNNCC 5 cut(s) 131, 219, 715, 901, 1320
NmeAIII GCCGAG 1 cut(s) 402
NmuCI GTSAC 2 cut(s) 1014, 1342
NspI RCATGY 2 cut(s) 125, 1336
PaeI GCATGC 1 cut(s) 125
PagI TCATGA 3 cut(s) 772, 874, 1276
PciSI GCTCTTC 1 cut(s) 294
PcsI WCGNNNNNNNCGW 2 cut(s) 689, 1334
PfeI GAWTC 3 cut(s) 46, 114, 323
PflFI GACNNNGTC 1 cut(s) 493
PkrI GCNGC 3 cut(s) 988, 991, 1363
PleI GAGTC 2 cut(s) 13, 1021
PpsI GAGTC 2 cut(s) 13, 1021
PshBI ATTAAT 3 cut(s) 210, 378, 510
PsiI TTATAA 1 cut(s) 431
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 3 cut(s) 610, 952, 1164
PspFI CCCAGC 2 cut(s) 132, 650
PspGI CCWGG 3 cut(s) 610, 952, 1164
PspN4I GGNNCC 5 cut(s) 131, 219, 715, 901, 1320
PspPI GGNCC 1 cut(s) 129
PsuI RGATCY 1 cut(s) 1291
PsyI GACNNNGTC 1 cut(s) 493
PvuII CAGCTG 2 cut(s) 989, 1349
RsaI GTAC 4 cut(s) 219, 901, 1125, 1354
RsaNI GTAC 4 cut(s) 218, 900, 1124, 1353
RseI CAYNNNNRTG 1 cut(s) 1327
SacI GAGCTC 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 7 cut(s) 210, 294, 378, 510, 671, 1038, 1395
SatI GCNGC 3 cut(s) 987, 990, 1362
Sau3AI GATC 6 cut(s) 463, 617, 742, 877, 1273, 1291
Sau96I GGNCC 1 cut(s) 129
SchI GAGTC 2 cut(s) 14, 1022
ScrFI CCNGG 3 cut(s) 612, 954, 1166
SduI GDGCHC 2 cut(s) 306, 772
SexAI ACCWGGT 1 cut(s) 1164
SfaNI GCATC 4 cut(s) 37, 597, 840, 1127
SinI GGWCC 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 1327
SmlI CTYRAG 3 cut(s) 485, 703, 1037
SmoI CTYRAG 3 cut(s) 485, 703, 1037
SpeI ACTAGT 1 cut(s) 371
SphI GCATGC 1 cut(s) 125
SsiI CCGC 1 cut(s) 1006
SspI AATATT 1 cut(s) 661
SspMI CTAG 2 cut(s) 249, 372
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 3 cut(s) 610, 952, 1164
StyI CCWWGG 1 cut(s) 799
TaaI ACNGT 2 cut(s) 197, 681
TaqI TCGA 2 cut(s) 758, 1170
TaqII GACCGA 1 cut(s) 1124
TfiI GAWTC 3 cut(s) 46, 114, 323
Tru1I TTAA 7 cut(s) 210, 294, 378, 510, 671, 1038, 1395
Tru9I TTAA 7 cut(s) 210, 294, 378, 510, 671, 1038, 1395
TscAI CASTG 3 cut(s) 242, 475, 1378
TseFI GTSAC 2 cut(s) 1014, 1342
TseI GCWGC 3 cut(s) 986, 989, 1361
Tsp45I GTSAC 2 cut(s) 1014, 1342
TspDTI ATGAA 5 cut(s) 306, 473, 513, 945, 1208
TspGWI ACGGA 1 cut(s) 1111
TspRI CASTG 3 cut(s) 242, 475, 1378
Tth111I GACNNNGTC 1 cut(s) 493
Vha464I CTTAAG 1 cut(s) 1037
VpaK11BI GGWCC 1 cut(s) 129
VspI ATTAAT 3 cut(s) 210, 378, 510
XapI RAATTY 5 cut(s) 181, 338, 519, 592, 642
XceI RCATGY 2 cut(s) 125, 1336
XcmI CCANNNNNNNNNTGG 1 cut(s) 47
XspI CTAG 2 cut(s) 249, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.