Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007400

Physical Location & Seq

Genomic Coordinates Forward (+)

8013023 .. 8017400

Gene Structure 4378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGGAGTCTGCAAATCTCCATCACCAGCATCATCAGCTCCAAGAGAATCTTGGTCATCTCGGGTCTTCTTCTTCCTCTTCTTTAGCTACTGCCCCATCTTACTATGGAGTTGGAATCAAGCATGCTTGGACCCAGCCTACTACTACTACTACTAACACCACTAATTTGAGCAACCCATCAAATTCAAGCTTCAACAGTAGTAGTTCTATTAATATGGTACCAGATTTGGGTTTTCACTGCTGGCCTCCTAGCAGTAGTAATAATTTGAATAGAGCTGGAAGCAGTAGTAGTATTAAGGAAGAGCTCTCATCATCTTCATCAGATTCAACCTTTCCAAAATTTACACAAATGCTGACCAGCCCCTCCACCACTAGTATTAACCTTGATGATGATGACTACCACTTTCCTACTCCTACAAGCCTCGGCCTTATAAAGAATGAGCAGAAAGAAATGATGATGAATGATCTCAGTGAAAAACTCTTGCTCAAGACCTTGTCCTCTTCTGGAATTAATCATCAAAATTCATTAGCTGGAGATTATCATCATCATCATCATCAACAATTTTACAGCTCAAATAATACCCATGTCCAGAATTTTACTCAATTGATGCCTGGGAGATCAGGAGGGCAATACTTCAGCCAAATTTATCCCAGCATAAATATTTCCAACTTAAACCAACAGTCGTCGCCGTCGTCAGCAATCTCAAGCTGTGGCTCCTCAGACATGAACTTGCAGGCTATTGATCTCTTAGCTTCTTCGAGATTTAGTGCTCATGAGCCTTCTAATTCACATGATACCCTTGGCATATACAACAAGGAAATTAGGCATAATTCCTTTGGTCTTCAACAGATGCACCAATCAAGAACAAATCATCATGATCATAGTCTGCTATCTTGTGGTACCAATAGTAAAATATCGTCTTTTGAGAATGAAATAACAGAAGTGAAGCGACCTGGCAGTTCGATTGAGCCAAAGGCAACACAAGCAGCTGCACCAAAGAAATCGCGGTTGGAGTCACGCACTCCCTGCCCACCCCTTAAGGTTAGGAAGGAGAAATTAGGAGATAGAATTGCAACTCTTCAGCAATTGGTTGCACCCTTTGGCAAGACCGACACAGCATCCGTACTGATGGAGGCTATCGGATACATCAAGTTCCTGCAAAACCAGGTCGAGACACTAAGCGTCCCGTACATGAAGTCATCACGCAACAACAAGCCCACTAAAGCAATGTTGCAAGGGGGTGTGATAGAGATAAACGGCTCAAATGGAGAGCATGAGAGAAAGCGAGATCTGAGAAGTAGAGGGCTGTGTTTGGTGCCATTGTCGTGCATGTCGTATGTCACAGCTGGTACTGACGCTGCTACTGCCACTGCTGGTGTTTCTGGAAGCGTTAACTGGCCAAGCCCTAACTATGGTCATGGAGGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

476

Amino Acids

51.78

Weight (kDa)

7.77

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27660
fragaria_vesca	FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400
malus_domestica	MD08G1026300.v1.1 MD15G1023100.v1.1
prunus_persica	Prupe.1G375000_v2.0.a1 Prupe.1G375000_v2.0.a1
pyrus_communis	pycom08g02040
rosa_chinensis	RchiOBHm_Chr6g0301601
rosa_laevigata	RLG00000011240
rosa_multiflora	Rmu_ssc0000452.1_g000010
rosa_roxburghii	Rroxscaffold_7G00166620
rosa_rugosa	Rorug06G0306800 Rorug06G0306900 Rorug06G0307000 Rorug06G0307100 Rorug06G0307100
rosa_samantha	Rh6AG420000 Rh6BG426100 Rh6CG433000 Rh6DG419400
rosa_wichuraiana	Rw6G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
Acc65I	GGTACC	2 cut(s)	217, 899
AccB1I	GGYRCC	3 cut(s)	217, 899, 1315
AccII	CGCG	1 cut(s)	1006
AciI	CCGC	1 cut(s)	1006
AcoI	YGGCCR	1 cut(s)	1397
AcsI	RAATTY	5 cut(s)	181, 338, 520, 592, 642
AcuI	CTGAAG	2 cut(s)	619, 1064
AfaI	GTAC	5 cut(s)	219, 901, 1125, 1190, 1351
AfiI	CCNNNNNNNGG	2 cut(s)	227, 1412
AflII	CTTAAG	1 cut(s)	1037
AgsI	TTSAA	5 cut(s)	186, 193, 268, 327, 845
AhlI	ACTAGT	1 cut(s)	371
AjnI	CCWGG	3 cut(s)	610, 952, 1164
AjuI	GAANNNNNNNTTGG	2 cut(s)	992, 1024
Alw21I	GWGCWC	2 cut(s)	306, 772
Alw26I	GTCTC	1 cut(s)	1166
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	3 cut(s)	242, 424, 1397
ApeKI	GCWGC	3 cut(s)	986, 989, 1358
ApoI	RAATTY	5 cut(s)	181, 338, 520, 592, 642
AseI	ATTAAT	2 cut(s)	210, 510
Asp718I	GGTACC	2 cut(s)	217, 899
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	1399
BanI	GGYRCC	3 cut(s)	217, 899, 1315
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	2 cut(s)	57, 833
Bbv12I	GWGCWC	2 cut(s)	306, 772
BbvI	GCAGC	3 cut(s)	976, 998, 1345
BccI	CCATC	4 cut(s)	27, 103, 184, 1123
BceAI	ACGGC	2 cut(s)	673, 1273
BciT130I	CCWGG	3 cut(s)	612, 954, 1166
BciVI	GTATCC	1 cut(s)	1136
BclI	TGATCA	1 cut(s)	877
BcoDI	GTCTC	1 cut(s)	1166
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	2 cut(s)	249, 372
BfrI	CTTAAG	1 cut(s)	1037
BfuI	GTATCC	1 cut(s)	1136
BglII	AGATCT	1 cut(s)	1288
BisI	GCNGC	3 cut(s)	987, 990, 1359
BlsI	GCNGC	3 cut(s)	988, 991, 1360
Bme1390I	CCNGG	3 cut(s)	612, 954, 1166
Bme18I	GGWCC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	5 cut(s)	131, 219, 715, 901, 1317
BmrFI	CCNGG	3 cut(s)	612, 954, 1166
BmsI	GCATC	4 cut(s)	37, 597, 840, 1127
BpiI	GAAGAC	2 cut(s)	57, 833
BpmI	CTGGAG	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	470, 688
BsaBI	GATNNNNATC	1 cut(s)	540
BsaJI	CCNNGG	3 cut(s)	421, 611, 799
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 1412
Bse1I	ACTGG	1 cut(s)	1400
Bse3DI	GCAATG	1 cut(s)	1233
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	3 cut(s)	612, 954, 1166
BseDI	CCNNGG	3 cut(s)	421, 611, 799
BseGI	GGATG	1 cut(s)	1118
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	2 cut(s)	227, 1412
BseMI	GCAATG	1 cut(s)	1233
BseMII	CTCAG	3 cut(s)	481, 732, 1283
BseNI	ACTGG	1 cut(s)	1400
BseRI	GAGGAG	1 cut(s)	706
BseXI	GCAGC	3 cut(s)	976, 998, 1345
BseYI	CCCAGC	2 cut(s)	132, 650
BsgI	GTGCAG	1 cut(s)	975
Bsh1236I	CGCG	1 cut(s)	1006
BshFI	GGCC	3 cut(s)	244, 426, 1399
BshNI	GGYRCC	3 cut(s)	217, 899, 1315
BsiHKAI	GWGCWC	2 cut(s)	306, 772
BsiHKCI	CYCGRG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	1169
BslI	CCNNNNNNNGG	2 cut(s)	227, 1412
BsmAI	GTCTC	1 cut(s)	1166
BsmFI	GGGAC	1 cut(s)	1169
BsnI	GGCC	3 cut(s)	244, 426, 1399
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	306, 772
Bsp143I	GATC	5 cut(s)	463, 617, 742, 877, 1288
BspACI	CCGC	1 cut(s)	1006
BspANI	GGCC	3 cut(s)	244, 426, 1399
BspCNI	CTCAG	3 cut(s)	480, 731, 1284
BspFNI	CGCG	1 cut(s)	1006
BspHI	TCATGA	2 cut(s)	772, 874
BspLI	GGNNCC	5 cut(s)	131, 219, 715, 901, 1317
BspQI	GCTCTTC	1 cut(s)	294
BspT107I	GGYRCC	3 cut(s)	217, 899, 1315
BspTI	CTTAAG	1 cut(s)	1037
BsrDI	GCAATG	1 cut(s)	1233
BsrI	ACTGG	1 cut(s)	1400
BssECI	CCNNGG	3 cut(s)	421, 611, 799
BssMI	GATC	5 cut(s)	463, 617, 742, 877, 1288
BssT1I	CCWWGG	1 cut(s)	799
Bst2UI	CCWGG	3 cut(s)	612, 954, 1166
Bst4CI	ACNGT	2 cut(s)	197, 681
Bst6I	CTCTTC	4 cut(s)	82, 294, 505, 1083
BstAFI	CTTAAG	1 cut(s)	1037
BstAPI	GCANNNNNTGC	1 cut(s)	1026
BstC8I	GCNNGC	3 cut(s)	123, 242, 735
BstDEI	CTNAG	5 cut(s)	467, 718, 748, 1178, 1292
BstF5I	GGATG	1 cut(s)	1118
BstFNI	CGCG	1 cut(s)	1006
BstKTI	GATC	5 cut(s)	466, 620, 745, 880, 1291
BstMAI	GTCTC	1 cut(s)	1166
BstMBI	GATC	5 cut(s)	463, 617, 742, 877, 1288
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 983, 1026, 1364
BstNI	CCWGG	3 cut(s)	612, 954, 1166
BstNSI	RCATGY	2 cut(s)	125, 1333
BstSCI	CCNGG	3 cut(s)	610, 952, 1164
BstUI	CGCG	1 cut(s)	1006
BstV1I	GCAGC	3 cut(s)	976, 998, 1345
BstV2I	GAAGAC	2 cut(s)	57, 833
BstX2I	RGATCY	1 cut(s)	1288
BstYI	RGATCY	1 cut(s)	1288
BsuI	GTATCC	1 cut(s)	1136
BsuRI	GGCC	3 cut(s)	244, 426, 1399
BtsCI	GGATG	1 cut(s)	1118
BtsI	GCAGTG	2 cut(s)	235, 1368
BtsIMutI	CAGTG	3 cut(s)	235, 475, 1368
Cac8I	GCNNGC	3 cut(s)	123, 242, 735
CciI	TCATGA	2 cut(s)	772, 874
Cfr13I	GGNCC	1 cut(s)	129
CseI	GACGC	2 cut(s)	1171, 1364
CsiI	ACCWGGT	1 cut(s)	1164
Csp6I	GTAC	5 cut(s)	218, 900, 1124, 1189, 1350
CviQI	GTAC	5 cut(s)	218, 900, 1124, 1189, 1350
DdeI	CTNAG	5 cut(s)	467, 718, 748, 1178, 1292
DpnI	GATC	5 cut(s)	465, 619, 744, 879, 1290
DpnII	GATC	5 cut(s)	463, 617, 742, 877, 1288
EaeI	YGGCCR	1 cut(s)	1397
Eam1104I	CTCTTC	4 cut(s)	82, 294, 505, 1083
EarI	CTCTTC	4 cut(s)	82, 294, 505, 1083
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	799
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	2 cut(s)	619, 1064
Eco88I	CYCGRG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	304
EcoRII	CCWGG	3 cut(s)	610, 952, 1164
EcoT14I	CCWWGG	1 cut(s)	799
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	799
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	1 cut(s)	1169
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	3 cut(s)	987, 990, 1359
FokI	GGATG	1 cut(s)	1105
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	3 cut(s)	987, 990, 1359
FspBI	CTAG	2 cut(s)	249, 372
GluI	GCNGC	3 cut(s)	987, 990, 1359
GsaI	CCCAGC	2 cut(s)	136, 654
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	3 cut(s)	244, 426, 1399
HgaI	GACGC	2 cut(s)	1171, 1364
HincII	GTYRAC	1 cut(s)	1393
HindII	GTYRAC	1 cut(s)	1393
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	5 cut(s)	5, 46, 114, 323, 1013
HpaI	GTTAAC	1 cut(s)	1393
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	1393
Hpy188I	TCNGA	4 cut(s)	322, 721, 1142, 1293
Hpy8I	GTNNAC	1 cut(s)	1393
Hpy99I	CGWCG	2 cut(s)	688, 694
HpyAV	CCTTC	2 cut(s)	789, 1042
HpyCH4III	ACNGT	2 cut(s)	197, 681
HpyCH4V	TGCA	9 cut(s)	11, 733, 853, 992, 1073, 1094, 1159, 1234, 1329
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 983, 1026, 1364
HpyF3I	CTNAG	5 cut(s)	467, 718, 748, 1178, 1292
KpnI	GGTACC	2 cut(s)	221, 903
Ksp22I	TGATCA	1 cut(s)	877
KspAI	GTTAAC	1 cut(s)	1393
Kzo9I	GATC	5 cut(s)	463, 617, 742, 877, 1288
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	42, 719
Lsp1109I	GCAGC	3 cut(s)	976, 998, 1345
LweI	GCATC	4 cut(s)	37, 597, 840, 1127
MabI	ACCWGGT	1 cut(s)	1164
MaeI	CTAG	2 cut(s)	249, 372
MaeIII	GTNAC	2 cut(s)	1014, 1339
MalI	GATC	5 cut(s)	465, 619, 744, 879, 1290
MboI	GATC	5 cut(s)	463, 617, 742, 877, 1288
MfeI	CAATTG	2 cut(s)	602, 1085
MflI	RGATCY	1 cut(s)	1288
MhlI	GDGCHC	2 cut(s)	306, 772
MlsI	TGGCCA	1 cut(s)	1399
MluNI	TGGCCA	1 cut(s)	1399
MlyI	GAGTC	2 cut(s)	14, 1022
MmeI	TCCRAC	3 cut(s)	91, 690, 990
Mox20I	TGGCCA	1 cut(s)	1399
MscI	TGGCCA	1 cut(s)	1399
MseI	TTAA	7 cut(s)	210, 294, 378, 510, 671, 1038, 1392
MslI	CAYNNNNRTG	1 cut(s)	1324
Msp20I	TGGCCA	1 cut(s)	1399
MspA1I	CMGCKG	2 cut(s)	989, 1346
MspCI	CTTAAG	1 cut(s)	1037
MspR9I	CCNGG	3 cut(s)	612, 954, 1166
MunI	CAATTG	2 cut(s)	602, 1085
MvaI	CCWGG	3 cut(s)	612, 954, 1166
MvnI	CGCG	1 cut(s)	1006
MwoI	GCNNNNNNNGC	4 cut(s)	34, 983, 1026, 1364
NdeII	GATC	5 cut(s)	463, 617, 742, 877, 1288
NlaIV	GGNNCC	5 cut(s)	131, 219, 715, 901, 1317
NmeAIII	GCCGAG	1 cut(s)	402
NmuCI	GTSAC	2 cut(s)	1014, 1339
NspI	RCATGY	2 cut(s)	125, 1333
PaeI	GCATGC	1 cut(s)	125
PagI	TCATGA	2 cut(s)	772, 874
PciSI	GCTCTTC	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	2 cut(s)	689, 1331
PfeI	GAWTC	3 cut(s)	46, 114, 323
PflFI	GACNNNGTC	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	988, 991, 1360
PleI	GAGTC	2 cut(s)	13, 1021
PpsI	GAGTC	2 cut(s)	13, 1021
PshBI	ATTAAT	2 cut(s)	210, 510
PsiI	TTATAA	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	3 cut(s)	610, 952, 1164
PspFI	CCCAGC	2 cut(s)	132, 650
PspGI	CCWGG	3 cut(s)	610, 952, 1164
PspN4I	GGNNCC	5 cut(s)	131, 219, 715, 901, 1317
PspPI	GGNCC	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	1288
PsyI	GACNNNGTC	1 cut(s)	493
PvuII	CAGCTG	2 cut(s)	989, 1346
RsaI	GTAC	5 cut(s)	219, 901, 1125, 1190, 1351
RsaNI	GTAC	5 cut(s)	218, 900, 1124, 1189, 1350
RseI	CAYNNNNRTG	1 cut(s)	1324
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	7 cut(s)	210, 294, 378, 510, 671, 1038, 1392
SatI	GCNGC	3 cut(s)	987, 990, 1359
Sau3AI	GATC	5 cut(s)	463, 617, 742, 877, 1288
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	2 cut(s)	14, 1022
ScrFI	CCNGG	3 cut(s)	612, 954, 1166
SduI	GDGCHC	2 cut(s)	306, 772
SexAI	ACCWGGT	1 cut(s)	1164
SfaNI	GCATC	4 cut(s)	37, 597, 840, 1127
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	1324
SmlI	CTYRAG	3 cut(s)	485, 703, 1037
SmoI	CTYRAG	3 cut(s)	485, 703, 1037
SpeI	ACTAGT	1 cut(s)	371
SphI	GCATGC	1 cut(s)	125
SsiI	CCGC	1 cut(s)	1006
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	2 cut(s)	249, 372
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	3 cut(s)	610, 952, 1164
StyI	CCWWGG	1 cut(s)	799
TaaI	ACNGT	2 cut(s)	197, 681
TaqI	TCGA	3 cut(s)	758, 962, 1170
TaqII	GACCGA	1 cut(s)	1124
TfiI	GAWTC	3 cut(s)	46, 114, 323
Tru1I	TTAA	7 cut(s)	210, 294, 378, 510, 671, 1038, 1392
Tru9I	TTAA	7 cut(s)	210, 294, 378, 510, 671, 1038, 1392
TscAI	CASTG	3 cut(s)	242, 475, 1375
TseFI	GTSAC	2 cut(s)	1014, 1339
TseI	GCWGC	3 cut(s)	986, 989, 1358
Tsp45I	GTSAC	2 cut(s)	1014, 1339
TspDTI	ATGAA	6 cut(s)	306, 473, 513, 740, 945, 1208
TspGWI	ACGGA	1 cut(s)	1111
TspRI	CASTG	3 cut(s)	242, 475, 1375
Tth111I	GACNNNGTC	1 cut(s)	493
Vha464I	CTTAAG	1 cut(s)	1037
VpaK11BI	GGWCC	1 cut(s)	129
VspI	ATTAAT	2 cut(s)	210, 510
XapI	RAATTY	5 cut(s)	181, 338, 520, 592, 642
XceI	RCATGY	2 cut(s)	125, 1333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XspI	CTAG	2 cut(s)	249, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.