Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007400

Physical Location & Seq

Genomic Coordinates Reverse (-)

60213616 .. 60218937

Gene Structure 5322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG419400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGAGTCTGCAAATCTCCATCACCAGCATCATCAGCTCCAAGAGAATCTTGGTCATCTCGGGTCTTCTTCTTCCTCTTCTTTAGCTACTGCCCCATCTTACTATGGAGTTGGAATCAAGCATGCTTGGACCCAGCCTACTACTACTACTACTAACACCACTAATTTGAGCAACCCATCAAATTCAAGCTTCAACAGTAGTAGTTCTATTAATATGGTACCAGATTTGGGTTTTCACTGCTGGCCTCCTAGCAGTAGTAATAATTTGAATAGAGCTGGAAGCAGTAGTAGTATTAAGGAAGAGCTCTCATCATCTTCATCAGATTCAAACTTTCCAAAATTTACACAAATGCTGACCAGCCCCTCCACCACTAGTATTAACCTTGATGATGATGACTACCACTTTCCTACTCCTACAAGCCTCGGCCTTATAAAGAATGAGCAGAAAGAAATGATGATGAATGATCTCAGTGAAAAACTCTTGCTCAAGACCTTGTCCTCTTCTGGAATTAATCATCAAATTTCATTAGCTGGAGATTATCATCATCATCATCATCAACAATTTTACAGCTCAAATAACACCCATGTCCAGAATTTTACTCAATTGATGCCTGGGAGATCAGGAGGGCAATACTTCAGCCAAATTTATCCCAGCATAAATATTTCCAACTTAAACCAACAGTCGTCGCCGTCGTCAGCAATCTCAAGCTGTGGCTCCTCAGACATGAACTTGCAGGCTATTGATCTCTTAGCTTCTTCGAGATTTAGTGCTCAAGAGCCTTCTAATTCACATGATACCCTTGGCATATACAACAAGGAAATTAGGCATAATTCCTTTGGTCTTCAACAGATGCACCAATCAAGAACAAATCATCATGATCATAGTCTGCTATCTTGTGGTACCAATAGTAAAATATCGTCTTTTGAGAATGAAATAACAGAAGTGAAGCGACCTGGCAGTTTGATTGAGCCAAAGGCAACACAAGCAGCTGCACCAAAGAAATCGCGGTTGGAGTCACGCACTCCCTGCCCACCCCTTAAGGTTAGGAAGGAGAAATTAGGAGATAGAATTGCAACTCTTCAGCAATTGGTTGCACCCTTTGGCAAGACCGACACAGCATCCGTACTGATGGAGGCTATCGGATACATCAAGTTCCTGCAAAACCAGGTCGAGGTACTACTAGTTTTACTTAATTCCCACTGCTTAATATATATCATCCATATAAATCAAAAACTTAAGGCCTTGTTCTACTTGAGAGATCAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

422

Amino Acids

46.61

Weight (kDa)

7.1

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27660
fragaria_vesca	FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400
malus_domestica	MD08G1026300.v1.1 MD15G1023100.v1.1
prunus_persica	Prupe.1G375000_v2.0.a1 Prupe.1G375000_v2.0.a1
pyrus_communis	pycom08g02040
rosa_chinensis	RchiOBHm_Chr6g0301601
rosa_laevigata	RLG00000011240
rosa_multiflora	Rmu_ssc0000452.1_g000010
rosa_roxburghii	Rroxscaffold_7G00166620
rosa_rugosa	Rorug06G0306800 Rorug06G0306900 Rorug06G0307000 Rorug06G0307100 Rorug06G0307100
rosa_samantha	Rh6AG420000 Rh6BG426100 Rh6CG433000 Rh6DG419400
rosa_wichuraiana	Rw6G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
Acc65I	GGTACC	2 cut(s)	217, 899
AccB1I	GGYRCC	2 cut(s)	217, 899
AccII	CGCG	1 cut(s)	1006
AciI	CCGC	1 cut(s)	1006
AcsI	RAATTY	5 cut(s)	181, 338, 519, 592, 642
AcuI	CTGAAG	2 cut(s)	619, 1064
AfaI	GTAC	4 cut(s)	219, 901, 1125, 1176
AfiI	CCNNNNNNNGG	2 cut(s)	227, 1171
AflII	CTTAAG	2 cut(s)	1037, 1235
AgsI	TTSAA	5 cut(s)	186, 193, 268, 327, 845
AhlI	ACTAGT	2 cut(s)	371, 1180
AjnI	CCWGG	3 cut(s)	610, 952, 1164
AjuI	GAANNNNNNNTTGG	2 cut(s)	992, 1024
Alw21I	GWGCWC	2 cut(s)	306, 772
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	3 cut(s)	242, 424, 1239
ApeKI	GCWGC	2 cut(s)	986, 989
ApoI	RAATTY	5 cut(s)	181, 338, 519, 592, 642
AseI	ATTAAT	2 cut(s)	210, 510
Asp718I	GGTACC	2 cut(s)	217, 899
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	2 cut(s)	217, 899
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	2 cut(s)	57, 833
Bbv12I	GWGCWC	2 cut(s)	306, 772
BbvI	GCAGC	2 cut(s)	976, 998
BccI	CCATC	4 cut(s)	27, 103, 184, 1123
BceAI	ACGGC	1 cut(s)	673
BciT130I	CCWGG	3 cut(s)	612, 954, 1166
BciVI	GTATCC	1 cut(s)	1136
BclI	TGATCA	1 cut(s)	877
BcuI	ACTAGT	2 cut(s)	371, 1180
BfaI	CTAG	4 cut(s)	249, 372, 1181, 1267
BfrI	CTTAAG	2 cut(s)	1037, 1235
BfuI	GTATCC	1 cut(s)	1136
BisI	GCNGC	2 cut(s)	987, 990
BlsI	GCNGC	2 cut(s)	988, 991
Bme1390I	CCNGG	3 cut(s)	612, 954, 1166
Bme18I	GGWCC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	4 cut(s)	131, 219, 715, 901
BmrFI	CCNGG	3 cut(s)	612, 954, 1166
BmsI	GCATC	4 cut(s)	37, 597, 840, 1127
BpiI	GAAGAC	2 cut(s)	57, 833
BpmI	CTGGAG	1 cut(s)	552
BpuEI	CTTGAG	3 cut(s)	470, 688, 756
BsaBI	GATNNNNATC	1 cut(s)	540
BsaJI	CCNNGG	3 cut(s)	421, 611, 799
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 1171
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	3 cut(s)	612, 954, 1166
BseDI	CCNNGG	3 cut(s)	421, 611, 799
BseGI	GGATG	2 cut(s)	1118, 1215
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	2 cut(s)	227, 1171
BseMII	CTCAG	2 cut(s)	481, 732
BseRI	GAGGAG	1 cut(s)	706
BseXI	GCAGC	2 cut(s)	976, 998
BseYI	CCCAGC	2 cut(s)	132, 650
BsgI	GTGCAG	1 cut(s)	975
Bsh1236I	CGCG	1 cut(s)	1006
BshFI	GGCC	3 cut(s)	244, 426, 1241
BshNI	GGYRCC	2 cut(s)	217, 899
BsiHKAI	GWGCWC	2 cut(s)	306, 772
BsiHKCI	CYCGRG	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	227, 1171
BsnI	GGCC	3 cut(s)	244, 426, 1241
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	306, 772
Bsp143I	GATC	5 cut(s)	463, 617, 742, 877, 1258
BspACI	CCGC	1 cut(s)	1006
BspANI	GGCC	3 cut(s)	244, 426, 1241
BspCNI	CTCAG	2 cut(s)	480, 731
BspFNI	CGCG	1 cut(s)	1006
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	4 cut(s)	131, 219, 715, 901
BspQI	GCTCTTC	1 cut(s)	294
BspT107I	GGYRCC	2 cut(s)	217, 899
BspTI	CTTAAG	2 cut(s)	1037, 1235
BssECI	CCNNGG	3 cut(s)	421, 611, 799
BssMI	GATC	5 cut(s)	463, 617, 742, 877, 1258
BssT1I	CCWWGG	1 cut(s)	799
Bst2UI	CCWGG	3 cut(s)	612, 954, 1166
Bst4CI	ACNGT	2 cut(s)	197, 681
Bst6I	CTCTTC	4 cut(s)	82, 294, 505, 1083
BstAFI	CTTAAG	2 cut(s)	1037, 1235
BstAPI	GCANNNNNTGC	1 cut(s)	1026
BstC8I	GCNNGC	3 cut(s)	123, 242, 735
BstDEI	CTNAG	3 cut(s)	467, 718, 748
BstF5I	GGATG	2 cut(s)	1118, 1215
BstFNI	CGCG	1 cut(s)	1006
BstKTI	GATC	5 cut(s)	466, 620, 745, 880, 1261
BstMBI	GATC	5 cut(s)	463, 617, 742, 877, 1258
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 983, 1026
BstNI	CCWGG	3 cut(s)	612, 954, 1166
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	3 cut(s)	610, 952, 1164
BstUI	CGCG	1 cut(s)	1006
BstV1I	GCAGC	2 cut(s)	976, 998
BstV2I	GAAGAC	2 cut(s)	57, 833
BsuI	GTATCC	1 cut(s)	1136
BsuRI	GGCC	3 cut(s)	244, 426, 1241
BtsCI	GGATG	2 cut(s)	1118, 1215
BtsI	GCAGTG	2 cut(s)	235, 1198
BtsIMutI	CAGTG	3 cut(s)	235, 475, 1198
Cac8I	GCNNGC	3 cut(s)	123, 242, 735
CciI	TCATGA	1 cut(s)	874
Cfr13I	GGNCC	1 cut(s)	129
CsiI	ACCWGGT	1 cut(s)	1164
Csp6I	GTAC	4 cut(s)	218, 900, 1124, 1175
CviAII	CATG	5 cut(s)	122, 584, 724, 791, 875
CviQI	GTAC	4 cut(s)	218, 900, 1124, 1175
DdeI	CTNAG	3 cut(s)	467, 718, 748
DpnI	GATC	5 cut(s)	465, 619, 744, 879, 1260
DpnII	GATC	5 cut(s)	463, 617, 742, 877, 1258
Eam1104I	CTCTTC	4 cut(s)	82, 294, 505, 1083
EarI	CTCTTC	4 cut(s)	82, 294, 505, 1083
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	799
Eco147I	AGGCCT	1 cut(s)	1241
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	2 cut(s)	619, 1064
Eco88I	CYCGRG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	304
EcoRII	CCWGG	3 cut(s)	610, 952, 1164
EcoT14I	CCWWGG	1 cut(s)	799
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	799
FaeI	CATG	5 cut(s)	125, 587, 727, 794, 878
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FatI	CATG	5 cut(s)	121, 583, 723, 790, 874
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	2 cut(s)	987, 990
FokI	GGATG	2 cut(s)	1105, 1202
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	987, 990
FspBI	CTAG	4 cut(s)	249, 372, 1181, 1267
GluI	GCNGC	2 cut(s)	987, 990
GsaI	CCCAGC	2 cut(s)	136, 654
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	3 cut(s)	244, 426, 1241
Hin1II	CATG	5 cut(s)	125, 587, 727, 794, 878
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	5 cut(s)	5, 46, 114, 323, 1013
HphI	GGTGA	1 cut(s)	14
Hpy188I	TCNGA	3 cut(s)	322, 721, 1142
Hpy188III	TCNNGA	8 cut(s)	487, 504, 589, 621, 759, 773, 861, 875
Hpy99I	CGWCG	2 cut(s)	688, 694
HpyAV	CCTTC	2 cut(s)	789, 1042
HpyCH4III	ACNGT	2 cut(s)	197, 681
HpyCH4V	TGCA	7 cut(s)	11, 733, 853, 992, 1073, 1094, 1159
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 983, 1026
HpyF3I	CTNAG	3 cut(s)	467, 718, 748
Hsp92II	CATG	5 cut(s)	125, 587, 727, 794, 878
KpnI	GGTACC	2 cut(s)	221, 903
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	5 cut(s)	463, 617, 742, 877, 1258
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	42, 719
Lsp1109I	GCAGC	2 cut(s)	976, 998
LweI	GCATC	4 cut(s)	37, 597, 840, 1127
MabI	ACCWGGT	1 cut(s)	1164
MaeI	CTAG	4 cut(s)	249, 372, 1181, 1267
MaeIII	GTNAC	1 cut(s)	1014
MalI	GATC	5 cut(s)	465, 619, 744, 879, 1260
MboI	GATC	5 cut(s)	463, 617, 742, 877, 1258
MfeI	CAATTG	2 cut(s)	602, 1085
MhlI	GDGCHC	2 cut(s)	306, 772
MlyI	GAGTC	2 cut(s)	14, 1022
MmeI	TCCRAC	3 cut(s)	91, 690, 990
MnlI	CCTC	9 cut(s)	85, 255, 373, 431, 508, 617, 727, 1126, 1165
MseI	TTAA	9 cut(s)	210, 294, 378, 510, 671, 1038, 1191, 1205, 1236
MspA1I	CMGCKG	1 cut(s)	989
MspCI	CTTAAG	2 cut(s)	1037, 1235
MspR9I	CCNGG	3 cut(s)	612, 954, 1166
MunI	CAATTG	2 cut(s)	602, 1085
MvaI	CCWGG	3 cut(s)	612, 954, 1166
MvnI	CGCG	1 cut(s)	1006
MwoI	GCNNNNNNNGC	3 cut(s)	34, 983, 1026
NdeII	GATC	5 cut(s)	463, 617, 742, 877, 1258
NlaIII	CATG	5 cut(s)	125, 587, 727, 794, 878
NlaIV	GGNNCC	4 cut(s)	131, 219, 715, 901
NmeAIII	GCCGAG	1 cut(s)	402
NmuCI	GTSAC	1 cut(s)	1014
NspI	RCATGY	1 cut(s)	125
PaeI	GCATGC	1 cut(s)	125
PagI	TCATGA	1 cut(s)	874
PceI	AGGCCT	1 cut(s)	1241
PciSI	GCTCTTC	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	689
PfeI	GAWTC	3 cut(s)	46, 114, 323
PflFI	GACNNNGTC	1 cut(s)	493
PkrI	GCNGC	2 cut(s)	988, 991
PleI	GAGTC	2 cut(s)	13, 1021
PpsI	GAGTC	2 cut(s)	13, 1021
PshBI	ATTAAT	2 cut(s)	210, 510
PsiI	TTATAA	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	3 cut(s)	610, 952, 1164
PspFI	CCCAGC	2 cut(s)	132, 650
PspGI	CCWGG	3 cut(s)	610, 952, 1164
PspN4I	GGNNCC	4 cut(s)	131, 219, 715, 901
PspPI	GGNCC	1 cut(s)	129
PsyI	GACNNNGTC	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	989
RsaI	GTAC	4 cut(s)	219, 901, 1125, 1176
RsaNI	GTAC	4 cut(s)	218, 900, 1124, 1175
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	9 cut(s)	210, 294, 378, 510, 671, 1038, 1191, 1205, 1236
SatI	GCNGC	2 cut(s)	987, 990
Sau3AI	GATC	5 cut(s)	463, 617, 742, 877, 1258
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	2 cut(s)	14, 1022
ScrFI	CCNGG	3 cut(s)	612, 954, 1166
SduI	GDGCHC	2 cut(s)	306, 772
SexAI	ACCWGGT	1 cut(s)	1164
SfaNI	GCATC	4 cut(s)	37, 597, 840, 1127
SinI	GGWCC	1 cut(s)	129
SmlI	CTYRAG	6 cut(s)	485, 703, 771, 1037, 1235, 1252
SmoI	CTYRAG	6 cut(s)	485, 703, 771, 1037, 1235, 1252
SpeI	ACTAGT	2 cut(s)	371, 1180
SphI	GCATGC	1 cut(s)	125
SseBI	AGGCCT	1 cut(s)	1241
SsiI	CCGC	1 cut(s)	1006
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	4 cut(s)	249, 372, 1181, 1267
SstI	GAGCTC	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	1241
StyD4I	CCNGG	3 cut(s)	610, 952, 1164
StyI	CCWWGG	1 cut(s)	799
TaaI	ACNGT	2 cut(s)	197, 681
TaqI	TCGA	2 cut(s)	758, 1170
TaqII	GACCGA	1 cut(s)	1124
TfiI	GAWTC	3 cut(s)	46, 114, 323
Tru1I	TTAA	9 cut(s)	210, 294, 378, 510, 671, 1038, 1191, 1205, 1236
Tru9I	TTAA	9 cut(s)	210, 294, 378, 510, 671, 1038, 1191, 1205, 1236
TscAI	CASTG	3 cut(s)	242, 475, 1205
TseFI	GTSAC	1 cut(s)	1014
TseI	GCWGC	2 cut(s)	986, 989
Tsp45I	GTSAC	1 cut(s)	1014
TspDTI	ATGAA	5 cut(s)	306, 473, 513, 740, 945
TspGWI	ACGGA	1 cut(s)	1111
TspRI	CASTG	3 cut(s)	242, 475, 1205
Tth111I	GACNNNGTC	1 cut(s)	493
Vha464I	CTTAAG	2 cut(s)	1037, 1235
VpaK11BI	GGWCC	1 cut(s)	129
VspI	ATTAAT	2 cut(s)	210, 510
XapI	RAATTY	5 cut(s)	181, 338, 519, 592, 642
XceI	RCATGY	1 cut(s)	125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XspI	CTAG	4 cut(s)	249, 372, 1181, 1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.