Rorug06G0306800

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007400
Physical Location & Seq
Reverse (-)
45792619 .. 45793644
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0306800.1

Sequence Viewer

Length: 666 bp
ATGGGAGTGAAACAGTCGATGAATTTTGGGTTGTTATGGTTTTTATGTTTGCAGGGAGGACTGCTTCTTTGCATTATGGCTCAAACTGATAACTTCCTCTTTATTGTGGACGAGGCGAAGATTCCAAGACTGTGCCAGCCGGCGCAGATCTTGCTTACTGTAAATGGAACGTTTCCTGGCCCCAATATTACAGTTACTAGAGGAGCTACCGTAAATGTTACTGTGCAAAATAAGGGACCCTATCCTATCACCATCCACTGGCATGGAGTGAAGCAACTCCGAAATCCATGGTCAGATGGTCCCGAGTACATTACACAAAATCCGATTCCACCATATGAAGGAAGCTTCAACTATACCCTTAGATTTTCAGATGAAGAAGGAACTTTATGGTGGCATGCTCATAGTGATTGGTCTCGTGCCTCCGTACACGGCGCCATCATTGTATTGCCGGCTCCAACTAAGAAGTACCCTTTTGAGCCTCAGCCTGATCATAATCGAACAATTATTCTTGGATCATGGTTCAAATATGATAGAAACTTGACGCAACAGTATCTGGACTCCCTAATCTCGGGAGGTGATGTTGATCCAGCAGATTCTTACACAATCAACGGTTATCCAGGACAACCTGGAGCTTCTTGTGACGGTACGTTCAAAACTCCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.7

Weight (kDa)

6.28

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 37 - 150 1.3e-35 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 431
AccB7I CCANNNNNTGG 1 cut(s) 258
AclI AACGTT 1 cut(s) 170
AclWI GGATC 2 cut(s) 520, 578
AcsI RAATTY 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 432
AfaI GTAC 4 cut(s) 308, 426, 467, 646
AfiI CCNNNNNNNGG 3 cut(s) 258, 338, 568
AgsI TTSAA 3 cut(s) 349, 523, 652
AjnI CCWGG 3 cut(s) 175, 616, 625
AluBI AGCT 3 cut(s) 206, 345, 632
AluI AGCT 3 cut(s) 206, 345, 632
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 2 cut(s) 520, 578
AlwNI CAGNNNCTG 1 cut(s) 553
Ama87I CYCGRG 2 cut(s) 302, 568
AoxI GGCC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 22
ArsI GACNNNNNNTTYG 2 cut(s) 51, 83
AspLEI GCGC 2 cut(s) 145, 434
AspS9I GGNCC 3 cut(s) 179, 236, 299
AsuHPI GGTGA 2 cut(s) 241, 587
AvaI CYCGRG 2 cut(s) 302, 568
AvaII GGWCC 2 cut(s) 236, 299
BanI GGYRCC 1 cut(s) 431
BauI CACGAG 1 cut(s) 414
BbvCI CCTCAGC 1 cut(s) 480
BccI CCATC 3 cut(s) 260, 290, 443
BceAI ACGGC 1 cut(s) 445
BciT130I CCWGG 3 cut(s) 177, 618, 627
BclI TGATCA 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 435
BglII AGATCT 1 cut(s) 147
Bme1390I CCNGG 3 cut(s) 177, 618, 627
Bme18I GGWCC 2 cut(s) 236, 299
BmeT110I CYCGRG 2 cut(s) 302, 568
BmgT120I GGNCC 3 cut(s) 179, 236, 299
BmiI GGNNCC 6 cut(s) 181, 237, 238, 301, 433, 453
BmrFI CCNGG 3 cut(s) 177, 618, 627
BpmI CTGGAG 1 cut(s) 648
Bpu10I CCTNAGC 1 cut(s) 480
BsaBI GATNNNNATC 2 cut(s) 492, 582
BsaHI GRCGYC 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 287
BsaXI ACNNNNNCTCC 4 cut(s) 195, 225, 564, 594
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 338, 568
Bse118I RCCGGY 2 cut(s) 139, 448
Bse1I ACTGG 1 cut(s) 263
Bse8I GATNNNNATC 2 cut(s) 492, 582
BseBI CCWGG 3 cut(s) 177, 618, 627
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 1 cut(s) 252
BseJI GATNNNNATC 2 cut(s) 492, 582
BseLI CCNNNNNNNGG 3 cut(s) 258, 338, 568
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 431
BsiHKCI CYCGRG 2 cut(s) 302, 568
BsiSI CCGG 2 cut(s) 140, 449
BslFI GGGAC 2 cut(s) 249, 285
BslI CCNNNNNNNGG 3 cut(s) 258, 338, 568
BsmAI GTCTC 1 cut(s) 417
BsmFI GGGAC 2 cut(s) 249, 285
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 417
BsoBI CYCGRG 2 cut(s) 302, 568
Bsp143I GATC 4 cut(s) 147, 487, 512, 583
Bsp19I CCATGG 1 cut(s) 287
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 493
BspLI GGNNCC 6 cut(s) 181, 237, 238, 301, 433, 453
BspPI GGATC 2 cut(s) 520, 578
BspT107I GGYRCC 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 417
BsrFI RCCGGY 2 cut(s) 139, 448
BsrI ACTGG 1 cut(s) 263
BssAI RCCGGY 2 cut(s) 139, 448
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 4 cut(s) 147, 487, 512, 583
BssNI GRCGYC 1 cut(s) 432
BssSI CACGAG 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 287
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 3 cut(s) 177, 618, 627
Bst4CI ACNGT 9 cut(s) 15, 132, 160, 193, 211, 223, 549, 611, 644
BstACI GRCGYC 1 cut(s) 432
BstAPI GCANNNNNTGC 1 cut(s) 151
BstC8I GCNNGC 4 cut(s) 137, 141, 396, 450
BstDEI CTNAG 3 cut(s) 359, 459, 480
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 252
BstH2I RGCGCY 1 cut(s) 435
BstHHI GCGC 2 cut(s) 145, 434
BstKTI GATC 4 cut(s) 150, 490, 515, 586
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 4 cut(s) 147, 487, 512, 583
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 3 cut(s) 177, 618, 627
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 3 cut(s) 175, 616, 625
BstX2I RGATCY 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 287
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 4 cut(s) 137, 141, 396, 450
CaiI CAGNNNCTG 1 cut(s) 553
CfoI GCGC 2 cut(s) 145, 434
Cfr10I RCCGGY 2 cut(s) 139, 448
Cfr13I GGNCC 3 cut(s) 179, 236, 299
CseI GACGC 1 cut(s) 550
Csp6I GTAC 4 cut(s) 307, 425, 466, 645
CviAII CATG 4 cut(s) 263, 288, 395, 516
CviJI RGCY 9 cut(s) 80, 139, 180, 206, 345, 452, 478, 484, 632
CviKI_1 RGCY 9 cut(s) 80, 139, 180, 206, 345, 452, 478, 484, 632
CviQI GTAC 4 cut(s) 307, 425, 466, 645
DdeI CTNAG 3 cut(s) 359, 459, 480
DinI GGCGCC 1 cut(s) 433
DpnI GATC 4 cut(s) 149, 489, 514, 585
DpnII GATC 4 cut(s) 147, 487, 512, 583
Eco130I CCWWGG 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 236, 299
Eco88I CYCGRG 2 cut(s) 302, 568
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 3 cut(s) 175, 616, 625
EcoT14I CCWWGG 1 cut(s) 287
EgeI GGCGCC 1 cut(s) 433
EheI GGCGCC 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 4 cut(s) 266, 291, 398, 519
FaqI GGGAC 2 cut(s) 249, 285
FatI CATG 4 cut(s) 262, 287, 394, 515
FauNDI CATATG 1 cut(s) 334
FbaI TGATCA 1 cut(s) 487
FokI GGATG 1 cut(s) 239
FspBI CTAG 1 cut(s) 198
GlaI GCGC 2 cut(s) 144, 433
GsuI CTGGAG 1 cut(s) 648
HaeII RGCGCY 1 cut(s) 435
HaeIII GGCC 1 cut(s) 180
HapII CCGG 2 cut(s) 140, 449
HgaI GACGC 1 cut(s) 550
HhaI GCGC 2 cut(s) 145, 434
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 4 cut(s) 266, 291, 398, 519
Hin6I GCGC 2 cut(s) 143, 432
HinP1I GCGC 2 cut(s) 143, 432
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 4 cut(s) 121, 325, 557, 593
HpaII CCGG 2 cut(s) 140, 449
HphI GGTGA 2 cut(s) 241, 587
Hpy166II GTNNAC 2 cut(s) 109, 427
Hpy188I TCNGA 4 cut(s) 281, 295, 324, 370
Hpy188III TCNNGA 3 cut(s) 302, 554, 570
Hpy8I GTNNAC 2 cut(s) 109, 427
HpyAV CCTTC 2 cut(s) 332, 371
HpyCH4III ACNGT 9 cut(s) 15, 132, 160, 193, 211, 223, 549, 611, 644
HpyCH4IV ACGT 2 cut(s) 170, 647
HpyCH4V TGCA 3 cut(s) 52, 72, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 3 cut(s) 359, 459, 480
HpySE526I ACGT 2 cut(s) 170, 647
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 4 cut(s) 266, 291, 398, 519
HspAI GCGC 2 cut(s) 143, 432
KasI GGCGCC 1 cut(s) 431
KflI GGGWCCC 1 cut(s) 236
KroI GCCGGC 2 cut(s) 139, 448
KroNI GCCGGC 2 cut(s) 141, 450
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 4 cut(s) 147, 487, 512, 583
LmnI GCTCC 3 cut(s) 203, 457, 629
MaeI CTAG 1 cut(s) 198
MaeII ACGT 2 cut(s) 170, 647
MaeIII GTNAC 3 cut(s) 193, 217, 638
MalI GATC 4 cut(s) 149, 489, 514, 585
MboI GATC 4 cut(s) 147, 487, 512, 583
MboII GAAGA 2 cut(s) 130, 386
MflI RGATCY 1 cut(s) 147
MluCI AATT 2 cut(s) 22, 501
Mly113I GGCGCC 1 cut(s) 432
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 7 cut(s) 50, 106, 107, 194, 430, 489, 566
MroNI GCCGGC 2 cut(s) 139, 448
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 2 cut(s) 140, 449
MspR9I CCNGG 3 cut(s) 177, 618, 627
MvaI CCWGG 3 cut(s) 177, 618, 627
MwoI GCNNNNNNNGC 1 cut(s) 151
NaeI GCCGGC 2 cut(s) 141, 450
NarI GGCGCC 1 cut(s) 432
NcoI CCATGG 1 cut(s) 287
NdeI CATATG 1 cut(s) 334
NdeII GATC 4 cut(s) 147, 487, 512, 583
NgoMIV GCCGGC 2 cut(s) 139, 448
NlaIII CATG 4 cut(s) 266, 291, 398, 519
NlaIV GGNNCC 6 cut(s) 181, 237, 238, 301, 433, 453
NmuCI GTSAC 1 cut(s) 638
NspI RCATGY 1 cut(s) 398
PaeI GCATGC 1 cut(s) 398
PdiI GCCGGC 2 cut(s) 141, 450
PfeI GAWTC 3 cut(s) 121, 325, 593
PflMI CCANNNNNTGG 1 cut(s) 258
PfoI TCCNGGA 1 cut(s) 616
PleI GAGTC 1 cut(s) 551
PluTI GGCGCC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 551
PpuMI RGGWCCY 1 cut(s) 236
Psp1406I AACGTT 1 cut(s) 170
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 3 cut(s) 175, 616, 625
PspGI CCWGG 3 cut(s) 175, 616, 625
PspN4I GGNNCC 6 cut(s) 181, 237, 238, 301, 433, 453
PspPI GGNCC 3 cut(s) 179, 236, 299
PspPPI RGGWCCY 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 553
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 4 cut(s) 308, 426, 467, 646
RsaNI GTAC 4 cut(s) 307, 425, 466, 645
RseI CAYNNNNRTG 1 cut(s) 261
Sau3AI GATC 4 cut(s) 147, 487, 512, 583
Sau96I GGNCC 3 cut(s) 179, 236, 299
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 3 cut(s) 177, 618, 627
SetI ASST 7 cut(s) 173, 208, 347, 577, 628, 634, 650
SfoI GGCGCC 1 cut(s) 433
SinI GGWCC 2 cut(s) 236, 299
SmiMI CAYNNNNRTG 1 cut(s) 261
SphI GCATGC 1 cut(s) 398
Sse9I AATT 2 cut(s) 22, 501
SspDI GGCGCC 1 cut(s) 431
SspI AATATT 1 cut(s) 187
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 3 cut(s) 175, 616, 625
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 9 cut(s) 15, 132, 160, 193, 211, 223, 549, 611, 644
TaiI ACGT 2 cut(s) 173, 650
TaqI TCGA 2 cut(s) 17, 496
TasI AATT 2 cut(s) 22, 501
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 3 cut(s) 121, 325, 593
TscAI CASTG 1 cut(s) 263
TseFI GTSAC 1 cut(s) 638
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 3 cut(s) 35, 351, 387
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 1 cut(s) 263
Van91I CCANNNNNTGG 1 cut(s) 258
VpaK11BI GGWCC 2 cut(s) 236, 299
XapI RAATTY 1 cut(s) 22
XceI RCATGY 1 cut(s) 398
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.