Rorug06G0307000

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007400
Physical Location & Seq
Reverse (-)
45812407 .. 45812655
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0307000.1

Sequence Viewer

Length: 249 bp
ATGTTCAACCCTTGCCGGAGACATACATATTCCCACCCAATAGAAGACCGGGGAAGCTTAGCACTCTTCCCTCATTCATCCAACAATATTCCTGTGATTGATTTAGGTGGTGGTGGAGCAGAAGGTCATGATCGAACTCGTATGGTTCAGCAAATACTTGAGGCTGGCCAAGAGTTTGGATTTTTTCAGGTTACTAAGGCTGGCTTCAAAATCTCGCTCTTCTTGCTTGCACTTACTCTATGCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.07

Weight (kDa)

6.89

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 30 - 73 6.9e-07 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 166
AgsI TTSAA 2 cut(s) 7, 208
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 13
AoxI GGCC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 50
BalI TGGCCA 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 51
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 13
BlpI GCTNAGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 51
Bpu1102I GCTNAGC 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 77
BshFI GGCC 1 cut(s) 168
BsiSI CCGG 2 cut(s) 16, 49
BsmAI GTCTC 1 cut(s) 13
BsnI GGCC 1 cut(s) 168
Bsp143I GATC 1 cut(s) 130
Bsp1720I GCTNAGC 1 cut(s) 58
BspANI GGCC 1 cut(s) 168
BspHI TCATGA 1 cut(s) 127
BspQI GCTCTTC 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 1 cut(s) 130
Bst6I CTCTTC 2 cut(s) 71, 224
BstC8I GCNNGC 3 cut(s) 166, 202, 228
BstDEI CTNAG 2 cut(s) 58, 195
BstF5I GGATG 1 cut(s) 77
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 48
BstV2I GAAGAC 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 176
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 77
Cac8I GCNNGC 3 cut(s) 166, 202, 228
CciI TCATGA 1 cut(s) 127
CviAII CATG 1 cut(s) 128
CviJI RGCY 5 cut(s) 57, 164, 168, 200, 204
CviKI_1 RGCY 5 cut(s) 57, 164, 168, 200, 204
DdeI CTNAG 2 cut(s) 58, 195
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 2 cut(s) 71, 224
EarI CTCTTC 2 cut(s) 71, 224
FaeI CATG 1 cut(s) 131
FaiI YATR 6 cut(s) 24, 28, 129, 143, 241, 247
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 1 cut(s) 127
FokI GGATG 1 cut(s) 64
HaeIII GGCC 1 cut(s) 168
HapII CCGG 2 cut(s) 16, 49
Hin1II CATG 1 cut(s) 131
HindIII AAGCTT 1 cut(s) 55
HpaII CCGG 2 cut(s) 16, 49
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 2 cut(s) 58, 195
Hsp92II CATG 1 cut(s) 131
Kzo9I GATC 1 cut(s) 130
LguI GCTCTTC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 6 cut(s) 29, 62, 105, 150, 173, 186
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 56, 58, 211
MlsI TGGCCA 1 cut(s) 168
MluNI TGGCCA 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 2 cut(s) 81, 154
Mox20I TGGCCA 1 cut(s) 168
MscI TGGCCA 1 cut(s) 168
Msp20I TGGCCA 1 cut(s) 168
MspI CCGG 2 cut(s) 16, 49
MspR9I CCNGG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 223
NciI CCSGG 1 cut(s) 50
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 131
PagI TCATGA 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 224
PsiI TTATAA 1 cut(s) 247
SapI GCTCTTC 1 cut(s) 224
Sau3AI GATC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 50
SetI ASST 4 cut(s) 59, 109, 127, 192
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SspI AATATT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 48
TaqI TCGA 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.