Rorug06G0307100

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007400
Physical Location & Seq
Forward (+)
45816321 .. 45819605
3285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0307100.1

Sequence Viewer

Length: 822 bp
ATGAAATCTTTACACCTCTCCGCCCAATTTCGTGCCCTAAATCCCAATCGCACTTGTTCTTCTTCTTCTTCTTCTTCTTCGATCACTCTCCTCCGACCCTGCAAATTCAACTCTGTTTCCCTCGCCTCACCTCCCAAGCCCTCCCGCTTAATCACGCTTTGCGCTTCCAATTCCGACAAGCCGTCGTCGGAATCGGCGGCGGTGGAGTCCATCAGGGAAGGGTTTCTTCAGTTTCAGAACGACCCGTCGCAGAGTCAGTGGAATGTGGAAGTCGGAAGCCCTAACGTTCCGGGTCCGTCCGTGGCGAAATTGAGCTTGGGCGACCAGGCTTTCTTTCTCATGGCCTTCATCGCCTGCACGACTTCGGTGGCATTTACGAGCCTTGTAATTGCAGCTGTCCCGGCGATATGTGCAATGGGGAGAGCTGCAACATCTCTTTCAAAGCTGGCAGATACAGCTCGTCAAGAACTCCCTAGTACTATGGCTGCCATTAGGCTCTCAGGCATGGAAATAAGTGATCTCACACTGGAACTGAATGACCTAAGCCAAGAGATAGCTGATGGGGTCAACAAATCCACTCAAGCTGTTCAAGCAGCAGAAGCTGGGATTCGGCAGTTTGGCTCACTCGCTCGGCAGCAAACGATGTCAATGATTCAAGAGAGGGCAAACCTGCCAGTAATCTCTTTGCAACCTGCCGTAATTGGAGCAGCAAAGAAGACCTCTCATGCTGTTGGCCAAGTGACTAAGAAGTTCATGAATATAATCTCTCAAAGGGACTCAGAGGATGAGGATGACATTGGAATTGATAGGGTGGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

29.0

Weight (kDa)

6.16

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 678, 700
AciI CCGC 4 cut(s) 21, 145, 197, 200
AclI AACGTT 1 cut(s) 285
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 2 cut(s) 104, 816
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 1 cut(s) 478
AgsI TTSAA 4 cut(s) 109, 441, 590, 656
AhdI GACNNNNNGTC 1 cut(s) 181
AjnI CCWGG 1 cut(s) 324
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 8 cut(s) 315, 395, 425, 445, 458, 557, 584, 602
AluI AGCT 8 cut(s) 315, 395, 425, 445, 458, 557, 584, 602
AlwNI CAGNNNCTG 1 cut(s) 602
AoxI GGCC 2 cut(s) 342, 733
ApeKI GCWGC 6 cut(s) 392, 425, 485, 593, 634, 707
ApoI RAATTY 2 cut(s) 104, 816
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 2 cut(s) 291, 401
AsuHPI GGTGA 1 cut(s) 120
AvaII GGWCC 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 735
BbsI GAAGAC 1 cut(s) 722
BbvI GCAGC 6 cut(s) 404, 412, 472, 605, 646, 719
BccI CCATC 2 cut(s) 218, 554
BceAI ACGGC 2 cut(s) 166, 680
BciT130I CCWGG 1 cut(s) 326
BcnI CCSGG 2 cut(s) 291, 401
BfaI CTAG 1 cut(s) 474
BfuAI ACCTGC 2 cut(s) 678, 700
BisI GCNGC 7 cut(s) 198, 393, 426, 486, 594, 635, 708
BlsI GCNGC 7 cut(s) 199, 394, 427, 487, 595, 636, 709
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 3 cut(s) 291, 326, 401
Bme18I GGWCC 1 cut(s) 293
BmeRI GACNNNNNGTC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 3 cut(s) 291, 326, 401
BpiI GAAGAC 1 cut(s) 722
Bpu10I CCTNAGC 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 564
BpuMI CCSGG 2 cut(s) 291, 401
BsaJI CCNNGG 1 cut(s) 300
Bse1I ACTGG 2 cut(s) 531, 674
Bse3DI GCAATG 1 cut(s) 420
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 790, 796
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 2 cut(s) 513, 792
BseNI ACTGG 2 cut(s) 531, 674
BseRI GAGGAG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 6 cut(s) 404, 412, 472, 605, 646, 719
BseYI CCCAGC 1 cut(s) 602
BsgI GTGCAG 1 cut(s) 340
BshFI GGCC 2 cut(s) 344, 735
BsiSI CCGG 2 cut(s) 290, 401
BslFI GGGAC 2 cut(s) 383, 788
BsmFI GGGAC 2 cut(s) 383, 788
BsnI GGCC 2 cut(s) 344, 735
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 81, 517
BspACI CCGC 4 cut(s) 21, 145, 197, 200
BspANI GGCC 2 cut(s) 344, 735
BspCNI CTCAG 2 cut(s) 512, 791
BspHI TCATGA 1 cut(s) 753
BspLI GGNNCC 1 cut(s) 294
BspMI ACCTGC 2 cut(s) 678, 700
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 2 cut(s) 531, 674
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 81, 517
Bst2UI CCWGG 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 355, 447
BstDEI CTNAG 4 cut(s) 499, 542, 744, 778
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 790, 796
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 2 cut(s) 84, 520
BstMBI GATC 2 cut(s) 81, 517
BstMWI GCNNNNNNNGC 6 cut(s) 350, 401, 410, 455, 590, 599
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 3 cut(s) 289, 324, 399
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 6 cut(s) 404, 412, 472, 605, 646, 719
BstV2I GAAGAC 1 cut(s) 722
BsuRI GGCC 2 cut(s) 344, 735
BtgI CCRYGG 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 334
BtsCI GGATG 2 cut(s) 790, 796
BtsIMutI CAGTG 2 cut(s) 263, 524
BveI ACCTGC 2 cut(s) 678, 700
Cac8I GCNNGC 2 cut(s) 355, 447
CaiI CAGNNNCTG 1 cut(s) 602
CciI TCATGA 1 cut(s) 753
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 477
CviAII CATG 4 cut(s) 340, 505, 725, 754
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 4 cut(s) 499, 542, 744, 778
DpnI GATC 2 cut(s) 83, 519
DpnII GATC 2 cut(s) 81, 517
DriI GACNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 733
Eam1105I GACNNNNNGTC 1 cut(s) 181
EciI GGCGGA 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 324
FaeI CATG 4 cut(s) 343, 508, 728, 757
FaiI YATR 7 cut(s) 341, 409, 482, 506, 726, 755, 761
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FaqI GGGAC 2 cut(s) 383, 788
FatI CATG 4 cut(s) 339, 504, 724, 753
FauI CCCGC 1 cut(s) 152
Fnu4HI GCNGC 7 cut(s) 198, 393, 426, 486, 594, 635, 708
FokI GGATG 2 cut(s) 797, 803
Fsp4HI GCNGC 7 cut(s) 198, 393, 426, 486, 594, 635, 708
FspBI CTAG 1 cut(s) 474
GlaI GCGC 1 cut(s) 163
GluI GCNGC 7 cut(s) 198, 393, 426, 486, 594, 635, 708
GsaI CCCAGC 1 cut(s) 606
HaeIII GGCC 2 cut(s) 344, 735
HapII CCGG 2 cut(s) 290, 401
HhaI GCGC 1 cut(s) 164
Hin1II CATG 4 cut(s) 343, 508, 728, 757
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HinfI GANTC 6 cut(s) 191, 206, 253, 607, 652, 776
HpaII CCGG 2 cut(s) 290, 401
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 6 cut(s) 95, 175, 190, 237, 275, 781
Hpy188III TCNNGA 3 cut(s) 464, 656, 754
Hpy8I GTNNAC 1 cut(s) 568
Hpy99I CGWCG 3 cut(s) 187, 190, 250
HpyAV CCTTC 2 cut(s) 212, 355
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 6 cut(s) 102, 357, 392, 413, 428, 688
HpyF10VI GCNNNNNNNGC 6 cut(s) 350, 401, 410, 455, 590, 599
HpyF3I CTNAG 4 cut(s) 499, 542, 744, 778
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 4 cut(s) 343, 508, 728, 757
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 81, 517
LmnI GCTCC 1 cut(s) 704
Lsp1109I GCAGC 6 cut(s) 404, 412, 472, 605, 646, 719
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 739
MalI GATC 2 cut(s) 83, 519
MboI GATC 2 cut(s) 81, 517
MboII GAAGA 9 cut(s) 51, 54, 57, 60, 63, 66, 69, 218, 727
MhlI GDGCHC 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 735
MluCI AATT 8 cut(s) 26, 104, 169, 308, 387, 699, 801, 816
MluNI TGGCCA 1 cut(s) 735
MlyI GAGTC 3 cut(s) 215, 262, 770
MmeI TCCRAC 4 cut(s) 118, 168, 198, 253
Mox20I TGGCCA 1 cut(s) 735
MroXI GAANNNNTTC 1 cut(s) 222
MscI TGGCCA 1 cut(s) 735
MseI TTAA 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 735
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 2 cut(s) 290, 401
MspR9I CCNGG 3 cut(s) 291, 326, 401
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 6 cut(s) 350, 401, 410, 455, 590, 599
NciI CCSGG 2 cut(s) 291, 401
NdeII GATC 2 cut(s) 81, 517
NlaIII CATG 4 cut(s) 343, 508, 728, 757
NlaIV GGNNCC 1 cut(s) 294
NmeAIII GCCGAG 1 cut(s) 610
NmuCI GTSAC 1 cut(s) 739
PagI TCATGA 1 cut(s) 753
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 3 cut(s) 191, 607, 652
PkrI GCNGC 7 cut(s) 199, 394, 427, 487, 595, 636, 709
PleI GAGTC 3 cut(s) 214, 261, 770
PpsI GAGTC 3 cut(s) 214, 261, 770
Psp1406I AACGTT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 602
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 7 cut(s) 198, 393, 426, 486, 594, 635, 708
Sau3AI GATC 2 cut(s) 81, 517
Sau96I GGNCC 1 cut(s) 293
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 3 cut(s) 215, 262, 770
ScrFI CCNGG 3 cut(s) 291, 326, 401
SduI GDGCHC 1 cut(s) 37
SinI GGWCC 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 8 cut(s) 26, 104, 169, 308, 387, 699, 801, 816
SsiI CCGC 4 cut(s) 21, 145, 197, 200
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 3 cut(s) 289, 324, 399
TaiI ACGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 80
TasI AATT 8 cut(s) 26, 104, 169, 308, 387, 699, 801, 816
TatI WGTACW 1 cut(s) 476
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 3 cut(s) 191, 607, 652
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 2 cut(s) 263, 531
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 6 cut(s) 392, 425, 485, 593, 634, 707
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 4 cut(s) 17, 337, 742, 770
TspGWI ACGGA 2 cut(s) 285, 289
TspRI CASTG 2 cut(s) 263, 531
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 2 cut(s) 104, 816
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 474
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.