Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007400

Physical Location & Seq

Genomic Coordinates Reverse (-)

61332900 .. 61337539

Gene Structure 4640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG420000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGTCTGCAAATCTCCATCACCAGCATCATCAGCTCCAAGAGAATCTTGGTCATCTCGGGTCTTCTTCTTCCTCTTCTTTAGCTACTGCCCCATCTTACTATGGAGTTGGAATCAAGCATGCTTGGACCCAGCCTACTACTACTACTACTACTAACACCACTAATTTGAGCAACCCATCAAATTCAAGCTTCAACAGTAGTAGTTCTATTAATATGGTACCAGATTTGGGTTTTCACTGCTGGCCTCCTAGCAGTAGTAATAATTTGAATAGAGCTGGAAGCAGTAGTAGTATTAAGGAAGAGCTCTCATCATCTTCATCAGATTCAACCTTTCCAAAATTTACACAAATGCTGACCAGCCCCTCCACCACTAGTATTAACCTTGATGATGATGACTACCACTTTCCTACTCCTACAAGCCTCGGCCTTATAAAGAATGAGCAGAAAGAAATGATGATGAATGATCTCAGCGAAAAACTCTTGCTCAAGACCTTGTCCTCTTCTGGAATTAATCATCAAATTTCATTAGCTGGAGATTTTCATCATCATCATCATCAACAATTTTACAGCTCAAATAACACCCATGTCCAGAATTTTACTCAATTGATGCCTGGGAGATCAGGAGGGCAATACTTCAGCCAAATTTATCCCAGCATAAATATTTCCAACTTAAACCAACAGTCGTCGCCGTCGTCAGCAATCTCAAGCTGTGGCTCCTCAGACATGAGCTTGCAGGCTATTGATCTCTTAGCTTCTTCGAGATTTAGTGCTCATGAGCCTTCTATTTCACATGATACCCTTGGCATATACAACAAGGAAATTAGGCATAATTCCTTTGGTCTTCAACAGATGCACCAATCAAGAACAAATCATCATGATCATAGTCTGCTATCTTGTGGTACCAATAGTAAAATATCGTCTTTTGAGAATGAAATAACAGAAGTGAAGCGACCTGGCAGTTTGATTGAGCCAAAGGCAACACAAGCAGCTGCACCAAAGAAATCGCGGTTGGAGTCACGCACTCCCTGCCCACCCCTTAAGGTCCCAGTTAATTATTCCTTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

356

Amino Acids

38.99

Weight (kDa)

6.61

Isoelectric Point (pI)

59.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27660
fragaria_vesca	FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400 FvH4_2g39400
malus_domestica	MD08G1026300.v1.1 MD15G1023100.v1.1
prunus_persica	Prupe.1G375000_v2.0.a1 Prupe.1G375000_v2.0.a1
pyrus_communis	pycom08g02040
rosa_chinensis	RchiOBHm_Chr6g0301601
rosa_laevigata	RLG00000011240
rosa_multiflora	Rmu_ssc0000452.1_g000010
rosa_roxburghii	Rroxscaffold_7G00166620
rosa_rugosa	Rorug06G0306800 Rorug06G0306900 Rorug06G0307000 Rorug06G0307100 Rorug06G0307100
rosa_samantha	Rh6AG420000 Rh6BG426100 Rh6CG433000 Rh6DG419400
rosa_wichuraiana	Rw6G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	434
Acc65I	GGTACC	2 cut(s)	220, 902
AccB1I	GGYRCC	2 cut(s)	220, 902
AccII	CGCG	1 cut(s)	1009
AciI	CCGC	1 cut(s)	1009
AcsI	RAATTY	5 cut(s)	184, 341, 522, 595, 645
AcuI	CTGAAG	1 cut(s)	622
AfaI	GTAC	2 cut(s)	222, 904
AfiI	CCNNNNNNNGG	1 cut(s)	230
AflII	CTTAAG	1 cut(s)	1040
AgsI	TTSAA	5 cut(s)	189, 196, 271, 330, 848
AhlI	ACTAGT	1 cut(s)	374
AjnI	CCWGG	2 cut(s)	613, 955
AjuI	GAANNNNNNNTTGG	2 cut(s)	995, 1027
Alw21I	GWGCWC	2 cut(s)	309, 775
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	2 cut(s)	245, 427
ApeKI	GCWGC	2 cut(s)	989, 992
ApoI	RAATTY	5 cut(s)	184, 341, 522, 595, 645
AseI	ATTAAT	2 cut(s)	213, 513
Asp718I	GGTACC	2 cut(s)	220, 902
AspS9I	GGNCC	2 cut(s)	129, 1045
AsuHPI	GGTGA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	129, 1045
BanI	GGYRCC	2 cut(s)	220, 902
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	2 cut(s)	57, 836
Bbv12I	GWGCWC	2 cut(s)	309, 775
BbvI	GCAGC	2 cut(s)	979, 1001
BccI	CCATC	3 cut(s)	27, 103, 187
BceAI	ACGGC	1 cut(s)	676
BciT130I	CCWGG	2 cut(s)	615, 957
BclI	TGATCA	1 cut(s)	880
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	2 cut(s)	252, 375
BfrI	CTTAAG	1 cut(s)	1040
BisI	GCNGC	2 cut(s)	990, 993
BlsI	GCNGC	2 cut(s)	991, 994
Bme1390I	CCNGG	2 cut(s)	615, 957
Bme18I	GGWCC	2 cut(s)	129, 1045
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	129, 1045
BmiI	GGNNCC	5 cut(s)	131, 222, 718, 904, 1047
BmrFI	CCNGG	2 cut(s)	615, 957
BmrI	ACTGGG	1 cut(s)	1043
BmsI	GCATC	3 cut(s)	37, 600, 843
BmuI	ACTGGG	1 cut(s)	1043
BpiI	GAAGAC	2 cut(s)	57, 836
BpmI	CTGGAG	1 cut(s)	555
BpuEI	CTTGAG	2 cut(s)	473, 691
BsaBI	GATNNNNATC	1 cut(s)	543
BsaJI	CCNNGG	3 cut(s)	424, 614, 802
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	1049
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	615, 957
BseDI	CCNNGG	3 cut(s)	424, 614, 802
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMII	CTCAG	2 cut(s)	484, 735
BseNI	ACTGG	1 cut(s)	1049
BseRI	GAGGAG	1 cut(s)	709
BseXI	GCAGC	2 cut(s)	979, 1001
BseYI	CCCAGC	2 cut(s)	132, 653
BsgI	GTGCAG	1 cut(s)	978
Bsh1236I	CGCG	1 cut(s)	1009
BshFI	GGCC	2 cut(s)	247, 429
BshNI	GGYRCC	2 cut(s)	220, 902
BsiHKAI	GWGCWC	2 cut(s)	309, 775
BsiHKCI	CYCGRG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	1031
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	1031
BsnI	GGCC	2 cut(s)	247, 429
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	309, 775
Bsp143I	GATC	4 cut(s)	466, 620, 745, 880
BspACI	CCGC	1 cut(s)	1009
BspANI	GGCC	2 cut(s)	247, 429
BspCNI	CTCAG	2 cut(s)	483, 734
BspFNI	CGCG	1 cut(s)	1009
BspHI	TCATGA	2 cut(s)	775, 877
BspLI	GGNNCC	5 cut(s)	131, 222, 718, 904, 1047
BspQI	GCTCTTC	1 cut(s)	297
BspT107I	GGYRCC	2 cut(s)	220, 902
BspTI	CTTAAG	1 cut(s)	1040
BsrI	ACTGG	1 cut(s)	1049
BssECI	CCNNGG	3 cut(s)	424, 614, 802
BssMI	GATC	4 cut(s)	466, 620, 745, 880
BssT1I	CCWWGG	1 cut(s)	802
Bst2UI	CCWGG	2 cut(s)	615, 957
Bst4CI	ACNGT	2 cut(s)	200, 684
Bst6I	CTCTTC	3 cut(s)	82, 297, 508
BstAFI	CTTAAG	1 cut(s)	1040
BstAPI	GCANNNNNTGC	1 cut(s)	1029
BstC8I	GCNNGC	4 cut(s)	123, 245, 734, 738
BstDEI	CTNAG	3 cut(s)	470, 721, 751
BstFNI	CGCG	1 cut(s)	1009
BstKTI	GATC	4 cut(s)	469, 623, 748, 883
BstMBI	GATC	4 cut(s)	466, 620, 745, 880
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 986, 1029
BstNI	CCWGG	2 cut(s)	615, 957
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	613, 955
BstUI	CGCG	1 cut(s)	1009
BstV1I	GCAGC	2 cut(s)	979, 1001
BstV2I	GAAGAC	2 cut(s)	57, 836
BsuRI	GGCC	2 cut(s)	247, 429
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	4 cut(s)	123, 245, 734, 738
CciI	TCATGA	2 cut(s)	775, 877
Cfr13I	GGNCC	2 cut(s)	129, 1045
Csp6I	GTAC	2 cut(s)	221, 903
CviAII	CATG	6 cut(s)	122, 587, 727, 776, 794, 878
CviQI	GTAC	2 cut(s)	221, 903
DdeI	CTNAG	3 cut(s)	470, 721, 751
DpnI	GATC	4 cut(s)	468, 622, 747, 882
DpnII	GATC	4 cut(s)	466, 620, 745, 880
Eam1104I	CTCTTC	3 cut(s)	82, 297, 508
EarI	CTCTTC	3 cut(s)	82, 297, 508
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	802
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	129, 1045
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	622
Eco88I	CYCGRG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	1045
EcoRII	CCWGG	2 cut(s)	613, 955
EcoT14I	CCWWGG	1 cut(s)	802
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	802
FaeI	CATG	6 cut(s)	125, 590, 730, 779, 797, 881
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	1 cut(s)	1031
FatI	CATG	6 cut(s)	121, 586, 726, 775, 793, 877
FbaI	TGATCA	1 cut(s)	880
Fnu4HI	GCNGC	2 cut(s)	990, 993
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	2 cut(s)	990, 993
FspBI	CTAG	2 cut(s)	252, 375
GluI	GCNGC	2 cut(s)	990, 993
GsaI	CCCAGC	2 cut(s)	136, 657
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	247, 429
Hin1II	CATG	6 cut(s)	125, 590, 730, 779, 797, 881
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	5 cut(s)	5, 46, 114, 326, 1016
HphI	GGTGA	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	325, 724
Hpy188III	TCNNGA	8 cut(s)	490, 507, 592, 624, 762, 776, 864, 878
Hpy99I	CGWCG	2 cut(s)	691, 697
HpyAV	CCTTC	1 cut(s)	792
HpyCH4III	ACNGT	2 cut(s)	200, 684
HpyCH4V	TGCA	4 cut(s)	11, 736, 856, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 986, 1029
HpyF3I	CTNAG	3 cut(s)	470, 721, 751
Hsp92II	CATG	6 cut(s)	125, 590, 730, 779, 797, 881
KpnI	GGTACC	2 cut(s)	224, 906
Ksp22I	TGATCA	1 cut(s)	880
Kzo9I	GATC	4 cut(s)	466, 620, 745, 880
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	42, 722
Lsp1109I	GCAGC	2 cut(s)	979, 1001
LweI	GCATC	3 cut(s)	37, 600, 843
MaeI	CTAG	2 cut(s)	252, 375
MaeIII	GTNAC	1 cut(s)	1017
MalI	GATC	4 cut(s)	468, 622, 747, 882
MboI	GATC	4 cut(s)	466, 620, 745, 880
MboII	GAAGA	9 cut(s)	57, 60, 63, 69, 309, 314, 495, 750, 836
MfeI	CAATTG	1 cut(s)	605
MhlI	GDGCHC	2 cut(s)	309, 775
MlyI	GAGTC	2 cut(s)	14, 1025
MmeI	TCCRAC	3 cut(s)	91, 693, 993
MnlI	CCTC	7 cut(s)	85, 258, 376, 434, 511, 620, 730
MseI	TTAA	8 cut(s)	213, 297, 381, 513, 674, 1041, 1053, 1069
MspA1I	CMGCKG	1 cut(s)	992
MspCI	CTTAAG	1 cut(s)	1040
MspR9I	CCNGG	2 cut(s)	615, 957
MunI	CAATTG	1 cut(s)	605
MvaI	CCWGG	2 cut(s)	615, 957
MvnI	CGCG	1 cut(s)	1009
MwoI	GCNNNNNNNGC	3 cut(s)	34, 986, 1029
NdeII	GATC	4 cut(s)	466, 620, 745, 880
NlaIII	CATG	6 cut(s)	125, 590, 730, 779, 797, 881
NlaIV	GGNNCC	5 cut(s)	131, 222, 718, 904, 1047
NmeAIII	GCCGAG	1 cut(s)	405
NmuCI	GTSAC	1 cut(s)	1017
NspI	RCATGY	1 cut(s)	125
PaeI	GCATGC	1 cut(s)	125
PagI	TCATGA	2 cut(s)	775, 877
PciSI	GCTCTTC	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	692
PfeI	GAWTC	3 cut(s)	46, 114, 326
PflFI	GACNNNGTC	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	991, 994
PleI	GAGTC	2 cut(s)	13, 1024
PpsI	GAGTC	2 cut(s)	13, 1024
PpuMI	RGGWCCY	1 cut(s)	1045
PshBI	ATTAAT	2 cut(s)	213, 513
PsiI	TTATAA	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	1045
Psp6I	CCWGG	2 cut(s)	613, 955
PspFI	CCCAGC	2 cut(s)	132, 653
PspGI	CCWGG	2 cut(s)	613, 955
PspN4I	GGNNCC	5 cut(s)	131, 222, 718, 904, 1047
PspPI	GGNCC	2 cut(s)	129, 1045
PspPPI	RGGWCCY	1 cut(s)	1045
PsyI	GACNNNGTC	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	992
RsaI	GTAC	2 cut(s)	222, 904
RsaNI	GTAC	2 cut(s)	221, 903
SacI	GAGCTC	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	8 cut(s)	213, 297, 381, 513, 674, 1041, 1053, 1069
SatI	GCNGC	2 cut(s)	990, 993
Sau3AI	GATC	4 cut(s)	466, 620, 745, 880
Sau96I	GGNCC	2 cut(s)	129, 1045
SchI	GAGTC	2 cut(s)	14, 1025
ScrFI	CCNGG	2 cut(s)	615, 957
SduI	GDGCHC	2 cut(s)	309, 775
SfaNI	GCATC	3 cut(s)	37, 600, 843
SinI	GGWCC	2 cut(s)	129, 1045
SmlI	CTYRAG	3 cut(s)	488, 706, 1040
SmoI	CTYRAG	3 cut(s)	488, 706, 1040
SpeI	ACTAGT	1 cut(s)	374
SphI	GCATGC	1 cut(s)	125
SsiI	CCGC	1 cut(s)	1009
SspI	AATATT	1 cut(s)	664
SspMI	CTAG	2 cut(s)	252, 375
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	613, 955
StyI	CCWWGG	1 cut(s)	802
TaaI	ACNGT	2 cut(s)	200, 684
TaqI	TCGA	1 cut(s)	761
TfiI	GAWTC	3 cut(s)	46, 114, 326
Tru1I	TTAA	8 cut(s)	213, 297, 381, 513, 674, 1041, 1053, 1069
Tru9I	TTAA	8 cut(s)	213, 297, 381, 513, 674, 1041, 1053, 1069
TscAI	CASTG	1 cut(s)	245
TseFI	GTSAC	1 cut(s)	1017
TseI	GCWGC	2 cut(s)	989, 992
Tsp45I	GTSAC	1 cut(s)	1017
TspDTI	ATGAA	5 cut(s)	309, 476, 516, 533, 948
TspRI	CASTG	1 cut(s)	245
Tth111I	GACNNNGTC	1 cut(s)	496
Vha464I	CTTAAG	1 cut(s)	1040
VpaK11BI	GGWCC	2 cut(s)	129, 1045
VspI	ATTAAT	2 cut(s)	213, 513
XapI	RAATTY	5 cut(s)	184, 341, 522, 595, 645
XceI	RCATGY	1 cut(s)	125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XspI	CTAG	2 cut(s)	252, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.