Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009585

Physical Location & Seq

Genomic Coordinates Forward (+)

9708861 .. 9714366

Gene Structure 5506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2736 bp

ATGGATTTCGATTCAGACTCCGATGGTTCTCATGTCTCCGCCACTCCTCCCCGAGACTCATTTCCGTCATCGCCGCCGCAACTTCAGTCACCGGCTAAGCATGTGCCGCCGGTCTCCCGGAAAATGACGTCTTCTTCCTCTCGCTCGAAGCCCAAAGCACCTACACATCCGCCGCCAAATCCCTCACAGGAAGCTCCAGTACCGTCTCCCTATCCTCCTCCTCCTCCTCCATCTCCACTATTTACCAATCTCCCTTTCCGGATCTGCCAATCCCAACCCGCTAGGTTTTCTTCTTCCGTGTCGTCCTTCTCCAGACTCTGCAGCAGAGCTTCTTTTACATCTGTTGAGAAATTGAAATCGGACGGCGTCGATTTTGTGCCTGAGCCACCTCTGGTAGAAGTAATCGCTCCTCCAAAATCAGTTAGGAGAAAGCCTCCGAATCTCATCACCGATACTATAACTTCTCCTCCGGTGAAACCTATGGTGTTTCGTAGCAACGGTAACGGCGAGGGTAATTTCGTGAAATTGAACTTAAATGGCAAGAGAGGGAAGAAGTTTCCCAGCAAATACAAGGGCGTCTCTAAATCTAGAAGCAGTTACTCATTCAGAGGGAAGAGATACAAGAAGAAAGAAGCTGATGGTGATGGCGAATCATTGTTGGAGGAAGAGTCTGATTTACAGAAACAGATAGAAGACGAAGCTAATGGTTTTATTAGCTCTGTAGAGGATGCGATTCTTGCTGTGAAGACTGAGGCTTCTGATGAGAATCTAACGAAGCTGTTGAATTTAGTTTATGGTTATGATTCTTTTCGAGACGGACAGTTGCAGGCGATTAAGATGATTCTTGGTGGGAGTTCAACGATGCTGGTATTGCCTACTGGTGCTGGTAAGTCTCTCTGCTACCAGATTCCGGCAATGATTCTTCCTGGAATCACGCTTGTAGTGAGTCCTTTGGTTTCGTTGATGATTGATCAGTTGAAGCATTTGCCTTCTATCATTAAGGGTGGTCTCTTGAGCAGTAGCCAGAGACCTGAGGAAGCAACGGAGACATTGCGGAAACTTAAAGAAGGCATAATAAAGGTTCTCTTTGTATCTCCTGAGAGACTTCTGAATGTAGAATTTTTGTCAATGTTTCGCATGTCTTTATCTGTGTCACTTGTCGTGGTTGATGAGGCACACTGCGTATCAGAATGGTCTCATAACTTCCGTCCTTCATATATGAGACTCAAGGCATCAATGCTGTTTTCTGAACTCAAGGCAGAATGCATTCTCGCGATGACCGCAACTGCCACTACAATGACTCTTCAGGCTGTCATGTCTTCACTAGAGATACCGTCAACCAATCTTATTCAGAAGTCACAACTCAGAGACAATTTTGAGTTGTCTGTCTCATTGAGTGGAGCTAATAGAATGAAAGATCTATTGATTTTGATGGAGTCTCCTCCATATAAGGAGATTCGAAGCATCATTGTGTACTGCAAATTTCAGTATGAGACTGACATGATAAGCAAGTATTTACGCGATAACAACATCAATGCAAAGGGTTATCACAGTGGTCTTCCTGCGAAGGACCGTGTTCGCATACAGGAGTCATTTTGTTCCAACAAGATTAGAGTGGTTGTTGCAACTGTAGCATTCGGCATGGGACTTGACAAGGGAGATGTAGGAGCTGTAATACACTTCAGCGTGCCAGGCAGTATGGAAGAATACGTTCAGGAAATTGGACGTGCTGGTCGCGACGGGCGGTTGTCATATTGTCATCTCTTTTATGATAATGACACATATCTAAAGCTTCGGAGTCTTGCACACAGTGATGGTGTCGATGAATATGCAGTTGGAAAATTTCTCACCCATGTATTTTCCACTGAGACAAAGCAACACGAGAAGATATGCTCGCTAGTCATTGAATCTGCCTCTCAAAAATTTGACATGAAGGAAGAGGTTATGCAAACGATTTTGACACATTTGGAGCTGGGGGAAGTGCAATACCTACGTATGCTTCCACAACTCAACATATGTTGCACTTTGAATTTCCACAAGTCTTCTCCAAACACTCTTGCTGCACGAAGTGCCATAGTTGCAGCAATTTTGAAGAAGTCTCACGTGAAGCAAGGGTTACATGTCTTTGATATACCAGCTGTGGCCTCTAGCATATGTGTTGCAACAACAGATGTCTTGGCTGAGATTCAAGCTCTGAAGATGAAGGGGGAAGTAACATACGAATTGAAGGACTCCGCCTTTTGTTACACAATCTTAAAATCTCCAAAGGAAATATGTTCATTGTCCAGTCATCTAACCAAGTGGCTCACAGAGATTGAAAGTTGCAAAGTGAGAAAACTGGATATTATGTCTAGTGCAGCTGTGGCTGCGATTAGTGTCTCTAACACTTCAGAACTGAGTTCTGGTGCCAAGCAAACTCGGAGCCTGCAAAGCAGAATCTTTGATTACTTCAATGGTGATGAAAAGTGTGACAGTCCGAGCAAGGCTACTCAAAATTGCGCCTTTCTACGAGCAGACATAAAGGTGTTTTTGCAGAGTAATCGCCAAGCCAAATTCACACCAAGAGCCATCGCGAGAATAATGCACGGAGTTGGAAGTCCAGCTTTTCCGAATTCAGTCTGGTCCAAGACTCATTTCTGGGGAAGGTATATGAACGTAGACTTCCGAGTGATAATGGAAGCGGCACAAACAGAGTTGTTCAATTTTGTTGACAGGAACGCAGCTTTAGCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

911

Amino Acids

100.75

Weight (kDa)

8.94

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	272 - 435	1.7e-23	DEAD/DEAH box helicase
Helicase_C	PF00271	484 - 581	1.5e-19	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27880 AT1G27880
fragaria_vesca	FvH4_4g24310 FvH4_4g24310
malus_domestica	MD16G1111900.v1.1
prunus_persica	Prupe.1G233100_v2.0.a1
pyrus_communis	pycom13g09790 pycom16g09490
rosa_chinensis	RchiOBHm_Chr4g0431111
rosa_laevigata	RLG00000006924
rosa_multiflora	Rmu_co7983982.1_g000001 Rmu_co8245775.1_g000001 Rmu_sc0040015.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372700
rosa_rugosa	Rorug04G0248100 Rorug04G0248200 Rorug04G0248300
rosa_samantha	Rh4AG304700 Rh4BG311900 Rh4CG328200 Rh4DG308500
rosa_wichuraiana	Rw4G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1731
AatII	GACGTC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	2405
AccI	GTMKAC	1 cut(s)	2658
AccII	CGCG	4 cut(s)	1274, 1521, 1737, 2573
AccIII	TCCGGA	1 cut(s)	258
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	8 cut(s)	784, 1118, 1481, 1841, 1922, 2029, 2552, 2611
AcuI	CTGAAG	5 cut(s)	68, 1289, 1666, 2216, 2373
AcvI	CACGTG	1 cut(s)	2104
AcyI	GRCGYC	3 cut(s)	128, 366, 576
AdeI	CACNNNGTG	2 cut(s)	1811, 2069
AfaI	GTAC	2 cut(s)	201, 1475
AfiI	CCNNNNNNNGG	1 cut(s)	910
AflIII	ACRYGT	1 cut(s)	2119
AjiI	CACGTC	1 cut(s)	1727
AjnI	CCWGG	2 cut(s)	925, 1690
AjuI	GAANNNNNNNTTGG	6 cut(s)	239, 271, 1818, 1850, 2618, 2650
AlwI	GGATC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	318
Ama87I	CYCGRG	1 cut(s)	51
Aor13HI	TCCGGA	1 cut(s)	258
AoxI	GGCC	1 cut(s)	2142
ApeKI	GCWGC	6 cut(s)	321, 2060, 2081, 2357, 2366, 2720
ApoI	RAATTY	8 cut(s)	784, 1118, 1481, 1841, 1922, 2029, 2552, 2611
Asp700I	GAANNNNTTC	2 cut(s)	1266, 1710
AspLEI	GCGC	1 cut(s)	2501
AspS9I	GGNCC	2 cut(s)	1570, 2622
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	6 cut(s)	81, 439, 484, 653, 1840, 2468
AsuII	TTCGAA	1 cut(s)	1459
AvaI	CYCGRG	1 cut(s)	51
AvaII	GGWCC	2 cut(s)	1570, 2622
AxyI	CCTNAGG	1 cut(s)	1032
BanI	GGYRCC	1 cut(s)	2405
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BauI	CACGAG	1 cut(s)	1880
BbrPI	CACGTG	1 cut(s)	2104
BbsI	GAAGAC	6 cut(s)	123, 699, 752, 1311, 1550, 2034
BbvI	GCAGC	6 cut(s)	333, 2047, 2093, 2353, 2369, 2732
BccI	CCATC	7 cut(s)	17, 238, 632, 638, 1426, 1808, 2576
BceAI	ACGGC	2 cut(s)	379, 520
BcgI	CGANNNNNNTGC	6 cut(s)	1811, 1845, 2522, 2556, 2563, 2597
BciT130I	CCWGG	2 cut(s)	927, 1692
BclI	TGATCA	1 cut(s)	970
BcnI	CCSGG	1 cut(s)	118
BfaI	CTAG	6 cut(s)	282, 588, 1325, 1898, 2148, 2352
BfmI	CTRYAG	3 cut(s)	319, 720, 1629
BglII	AGATCT	1 cut(s)	1417
BlpI	GCTNAGC	1 cut(s)	96
Bme1390I	CCNGG	3 cut(s)	118, 927, 1692
Bme18I	GGWCC	2 cut(s)	1570, 2622
BmeT110I	CYCGRG	1 cut(s)	51
BmgBI	CACGTC	1 cut(s)	1727
BmgT120I	GGNCC	2 cut(s)	1570, 2622
BmiI	GGNNCC	2 cut(s)	2407, 2423
BmrFI	CCNGG	3 cut(s)	118, 927, 1692
BmsI	GCATC	4 cut(s)	718, 852, 1241, 1473
BpiI	GAAGAC	6 cut(s)	123, 699, 752, 1311, 1550, 2034
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
BpmI	CTGGAG	2 cut(s)	180, 295
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu1102I	GCTNAGC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	1459
BpuEI	CTTGAG	3 cut(s)	1033, 1211, 1238
BpuMI	CCSGG	1 cut(s)	118
BsaAI	YACGTR	2 cut(s)	1994, 2104
BsaBI	GATNNNNATC	1 cut(s)	765
BsaHI	GRCGYC	3 cut(s)	128, 366, 576
BsaI	GGTCTC	4 cut(s)	118, 1013, 1021, 1200
BsaWI	WCCGGW	2 cut(s)	258, 469
BsaXI	ACNNNNNCTCC	4 cut(s)	451, 481, 653, 683
Bsc4I	CCNNNNNNNGG	1 cut(s)	910
Bse118I	RCCGGY	2 cut(s)	91, 109
Bse1I	ACTGG	4 cut(s)	197, 883, 2286, 2343
Bse21I	CCTNAGG	1 cut(s)	1032
Bse3DI	GCAATG	2 cut(s)	921, 1049
Bse8I	GATNNNNATC	1 cut(s)	765
BseAI	TCCGGA	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	927, 1692
BseGI	GGATG	2 cut(s)	166, 733
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	1 cut(s)	910
BseMI	GCAATG	2 cut(s)	921, 1049
BseMII	CTCAG	8 cut(s)	372, 741, 1023, 1089, 1378, 1857, 2172, 2387
BseNI	ACTGG	4 cut(s)	197, 883, 2286, 2343
BseRI	GAGGAG	8 cut(s)	36, 207, 210, 213, 216, 399, 456, 1431
BseXI	GCAGC	6 cut(s)	333, 2047, 2093, 2353, 2369, 2732
BseYI	CCCAGC	2 cut(s)	560, 1972
BsgI	GTGCAG	2 cut(s)	2046, 2376
Bsh1236I	CGCG	4 cut(s)	1274, 1521, 1737, 2573
BshFI	GGCC	1 cut(s)	2144
BshNI	GGYRCC	1 cut(s)	2405
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	6 cut(s)	92, 110, 118, 259, 470, 911
BslFI	GGGAC	1 cut(s)	1659
BslI	CCNNNNNNNGG	1 cut(s)	910
BsmBI	CGTCTC	3 cut(s)	210, 583, 807
BsmFI	GGGAC	1 cut(s)	1659
BsmI	GAATGC	3 cut(s)	1266, 1268, 1634
BsnI	GGCC	1 cut(s)	2144
Bso31I	GGTCTC	4 cut(s)	118, 1013, 1021, 1200
BsoBI	CYCGRG	1 cut(s)	51
Bsp119I	TTCGAA	1 cut(s)	1459
Bsp13I	TCCGGA	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	261, 970, 1417
Bsp1720I	GCTNAGC	1 cut(s)	96
Bsp68I	TCGCGA	3 cut(s)	1274, 1737, 2573
BspANI	GGCC	1 cut(s)	2144
BspCNI	CTCAG	8 cut(s)	373, 742, 1024, 1090, 1377, 1858, 2173, 2388
BspEI	TCCGGA	1 cut(s)	258
BspFNI	CGCG	4 cut(s)	1274, 1521, 1737, 2573
BspLI	GGNNCC	2 cut(s)	2407, 2423
BspMAI	CTGCAG	1 cut(s)	323
BspPI	GGATC	1 cut(s)	269
BspT104I	TTCGAA	1 cut(s)	1459
BspT107I	GGYRCC	1 cut(s)	2405
BspTNI	GGTCTC	4 cut(s)	118, 1013, 1021, 1200
BsrDI	GCAATG	2 cut(s)	921, 1049
BsrFI	RCCGGY	2 cut(s)	91, 109
BsrI	ACTGG	4 cut(s)	197, 883, 2286, 2343
BssAI	RCCGGY	2 cut(s)	91, 109
BssMI	GATC	3 cut(s)	261, 970, 1417
BssNI	GRCGYC	3 cut(s)	128, 366, 576
BssSI	CACGAG	1 cut(s)	1880
Bst2BI	CACGAG	1 cut(s)	1880
Bst2UI	CCWGG	2 cut(s)	927, 1692
Bst4CI	ACNGT	9 cut(s)	204, 500, 822, 1335, 1553, 1574, 1630, 1811, 2474
Bst6I	CTCTTC	4 cut(s)	608, 660, 1308, 1932
BstACI	GRCGYC	3 cut(s)	128, 366, 576
BstAPI	GCANNNNNTGC	1 cut(s)	2069
BstBAI	YACGTR	2 cut(s)	1994, 2104
BstBI	TTCGAA	1 cut(s)	1459
BstC8I	GCNNGC	4 cut(s)	828, 1688, 1895, 2426
BstDEI	CTNAG	9 cut(s)	96, 381, 750, 1032, 1098, 1364, 1866, 2181, 2396
BstF5I	GGATG	2 cut(s)	166, 733
BstFNI	CGCG	4 cut(s)	1274, 1521, 1737, 2573
BstHHI	GCGC	1 cut(s)	2501
BstKTI	GATC	3 cut(s)	264, 973, 1420
BstMBI	GATC	3 cut(s)	261, 970, 1417
BstNI	CCWGG	2 cut(s)	927, 1692
BstNSI	RCATGY	3 cut(s)	104, 1141, 2123
BstSCI	CCNGG	3 cut(s)	116, 925, 1690
BstSFI	CTRYAG	3 cut(s)	319, 720, 1629
BstSNI	TACGTA	1 cut(s)	1994
BstUI	CGCG	4 cut(s)	1274, 1521, 1737, 2573
BstV1I	GCAGC	6 cut(s)	333, 2047, 2093, 2353, 2369, 2732
BstV2I	GAAGAC	6 cut(s)	123, 699, 752, 1311, 1550, 2034
BstX2I	RGATCY	2 cut(s)	261, 1417
BstYI	RGATCY	2 cut(s)	261, 1417
Bsu36I	CCTNAGG	1 cut(s)	1032
BsuRI	GGCC	1 cut(s)	2144
BtgZI	GCGATG	3 cut(s)	54, 1289, 2554
BtrI	CACGTC	1 cut(s)	1727
BtsCI	GGATG	2 cut(s)	166, 733
BtsI	GCAGTG	1 cut(s)	1177
BtsIMutI	CAGTG	4 cut(s)	1177, 1558, 1816, 1863
BtuMI	TCGCGA	3 cut(s)	1274, 1737, 2573
Cac8I	GCNNGC	4 cut(s)	828, 1688, 1895, 2426
CaiI	CAGNNNCTG	1 cut(s)	318
CfoI	GCGC	1 cut(s)	2501
Cfr10I	RCCGGY	2 cut(s)	91, 109
Cfr13I	GGNCC	2 cut(s)	1570, 2622
CseI	GACGC	2 cut(s)	355, 565
Csp6I	GTAC	2 cut(s)	200, 1474
CviAII	CATG	9 cut(s)	32, 101, 1138, 1315, 1501, 1642, 1853, 1930, 2120
CviQI	GTAC	2 cut(s)	200, 1474
DdeI	CTNAG	9 cut(s)	96, 381, 750, 1032, 1098, 1364, 1866, 2181, 2396
DpnI	GATC	3 cut(s)	263, 972, 1419
DpnII	GATC	3 cut(s)	261, 970, 1417
DraIII	CACNNNGTG	2 cut(s)	1811, 2069
DrdI	GACNNNNNNGTC	1 cut(s)	1731
DseDI	GACNNNNNNGTC	1 cut(s)	1731
Eam1104I	CTCTTC	4 cut(s)	608, 660, 1308, 1932
EarI	CTCTTC	4 cut(s)	608, 660, 1308, 1932
EciI	GGCGGA	3 cut(s)	28, 159, 2224
Eco105I	TACGTA	1 cut(s)	1994
Eco31I	GGTCTC	4 cut(s)	118, 1013, 1021, 1200
Eco47I	GGWCC	2 cut(s)	1570, 2622
Eco57I	CTGAAG	5 cut(s)	68, 1289, 1666, 2216, 2373
Eco72I	CACGTG	1 cut(s)	2104
Eco81I	CCTNAGG	1 cut(s)	1032
Eco88I	CYCGRG	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	2611
EcoRII	CCWGG	2 cut(s)	925, 1690
EcoT22I	ATGCAT	1 cut(s)	1268
Esp3I	CGTCTC	3 cut(s)	210, 583, 807
FaeI	CATG	9 cut(s)	35, 104, 1141, 1318, 1504, 1645, 1856, 1933, 2123
FalI	AAGNNNNNCTT	4 cut(s)	1070, 1102, 2587, 2619
FaqI	GGGAC	1 cut(s)	1659
FatI	CATG	9 cut(s)	31, 100, 1137, 1314, 1500, 1641, 1852, 1929, 2119
FauI	CCCGC	1 cut(s)	286
FauNDI	CATATG	2 cut(s)	2015, 2153
FbaI	TGATCA	1 cut(s)	970
FblI	GTMKAC	1 cut(s)	2658
FokI	GGATG	2 cut(s)	153, 740
FspBI	CTAG	6 cut(s)	282, 588, 1325, 1898, 2148, 2352
GlaI	GCGC	1 cut(s)	2500
GsaI	CCCAGC	2 cut(s)	564, 1976
GsuI	CTGGAG	2 cut(s)	180, 295
HaeIII	GGCC	1 cut(s)	2144
HapII	CCGG	6 cut(s)	92, 110, 118, 259, 470, 911
HgaI	GACGC	2 cut(s)	355, 565
HhaI	GCGC	1 cut(s)	2501
Hin1I	GRCGYC	3 cut(s)	128, 366, 576
Hin1II	CATG	9 cut(s)	35, 104, 1141, 1318, 1504, 1645, 1856, 1933, 2123
Hin6I	GCGC	1 cut(s)	2499
HinP1I	GCGC	1 cut(s)	2499
HincII	GTYRAC	2 cut(s)	1338, 2710
HindII	GTYRAC	2 cut(s)	1338, 2710
HindIII	AAGCTT	1 cut(s)	1790
HpaII	CCGG	6 cut(s)	92, 110, 118, 259, 470, 911
HphI	GGTGA	6 cut(s)	81, 439, 484, 653, 1840, 2468
Hpy166II	GTNNAC	4 cut(s)	1338, 1474, 2659, 2710
Hpy8I	GTNNAC	4 cut(s)	1338, 1474, 2659, 2710
Hpy99I	CGWCG	2 cut(s)	371, 1742
HpyAV	CCTTC	9 cut(s)	316, 999, 1061, 1221, 1561, 1927, 2197, 2221, 2637
HpyCH4III	ACNGT	9 cut(s)	204, 500, 822, 1335, 1553, 1574, 1630, 1811, 2474
HpyCH4IV	ACGT	6 cut(s)	128, 1710, 1726, 1993, 2103, 2655
HpyF3I	CTNAG	9 cut(s)	96, 381, 750, 1032, 1098, 1364, 1866, 2181, 2396
HpySE526I	ACGT	6 cut(s)	128, 1710, 1726, 1993, 2103, 2655
Hsp92I	GRCGYC	3 cut(s)	128, 366, 576
Hsp92II	CATG	9 cut(s)	35, 104, 1141, 1318, 1504, 1645, 1856, 1933, 2123
HspAI	GCGC	1 cut(s)	2499
Kpn2I	TCCGGA	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	970
Kzo9I	GATC	3 cut(s)	261, 970, 1417
LmnI	GCTCC	6 cut(s)	199, 412, 1400, 1667, 1969, 2421
Lsp1109I	GCAGC	6 cut(s)	333, 2047, 2093, 2353, 2369, 2732
LweI	GCATC	4 cut(s)	718, 852, 1241, 1473
MaeI	CTAG	6 cut(s)	282, 588, 1325, 1898, 2148, 2352
MaeII	ACGT	6 cut(s)	128, 1710, 1726, 1993, 2103, 2655
MaeIII	GTNAC	9 cut(s)	87, 500, 596, 1152, 1356, 2115, 2212, 2243, 2468
MalI	GATC	3 cut(s)	263, 972, 1419
MboI	GATC	3 cut(s)	261, 970, 1417
MflI	RGATCY	2 cut(s)	261, 1417
MmeI	TCCRAC	4 cut(s)	639, 1626, 1816, 2572
Mph1103I	ATGCAT	1 cut(s)	1268
MroI	TCCGGA	1 cut(s)	258
MroXI	GAANNNNTTC	2 cut(s)	1266, 1710
MseI	TTAA	5 cut(s)	533, 834, 999, 1062, 2255
MslI	CAYNNNNRTG	4 cut(s)	1295, 1469, 1812, 2522
MspA1I	CMGCKG	2 cut(s)	2138, 2360
MspI	CCGG	6 cut(s)	92, 110, 118, 259, 470, 911
MspR9I	CCNGG	3 cut(s)	118, 927, 1692
Mva1269I	GAATGC	3 cut(s)	1266, 1268, 1634
MvaI	CCWGG	2 cut(s)	927, 1692
MvnI	CGCG	4 cut(s)	1274, 1521, 1737, 2573
NciI	CCSGG	1 cut(s)	118
NdeI	CATATG	2 cut(s)	2015, 2153
NdeII	GATC	3 cut(s)	261, 970, 1417
NlaIII	CATG	9 cut(s)	35, 104, 1141, 1318, 1504, 1645, 1856, 1933, 2123
NlaIV	GGNNCC	2 cut(s)	2407, 2423
NmuCI	GTSAC	4 cut(s)	87, 1152, 1356, 2468
NruI	TCGCGA	3 cut(s)	1274, 1737, 2573
NsiI	ATGCAT	1 cut(s)	1268
NspI	RCATGY	3 cut(s)	104, 1141, 2123
NspV	TTCGAA	1 cut(s)	1459
PciI	ACATGT	1 cut(s)	2119
PcsI	WCGNNNNNNNCGW	1 cut(s)	504
PctI	GAATGC	3 cut(s)	1266, 1268, 1634
PdmI	GAANNNNTTC	2 cut(s)	1266, 1710
PflFI	GACNNNGTC	1 cut(s)	365
PfoI	TCCNGGA	2 cut(s)	116, 925
PmaCI	CACGTG	1 cut(s)	2104
PmlI	CACGTG	1 cut(s)	2104
Ppu21I	YACGTR	2 cut(s)	1994, 2104
PscI	ACATGT	1 cut(s)	2119
Psp6I	CCWGG	2 cut(s)	925, 1690
PspCI	CACGTG	1 cut(s)	2104
PspFI	CCCAGC	2 cut(s)	560, 1972
PspGI	CCWGG	2 cut(s)	925, 1690
PspN4I	GGNNCC	2 cut(s)	2407, 2423
PspPI	GGNCC	2 cut(s)	1570, 2622
PstI	CTGCAG	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	318
PsuI	RGATCY	2 cut(s)	261, 1417
PsyI	GACNNNGTC	1 cut(s)	365
PvuII	CAGCTG	2 cut(s)	2138, 2360
RruI	TCGCGA	3 cut(s)	1274, 1737, 2573
RsaI	GTAC	2 cut(s)	201, 1475
RsaNI	GTAC	2 cut(s)	200, 1474
RseI	CAYNNNNRTG	4 cut(s)	1295, 1469, 1812, 2522
SaqAI	TTAA	5 cut(s)	533, 834, 999, 1062, 2255
Sau3AI	GATC	3 cut(s)	261, 970, 1417
Sau96I	GGNCC	2 cut(s)	1570, 2622
ScrFI	CCNGG	3 cut(s)	118, 927, 1692
SfaNI	GCATC	4 cut(s)	718, 852, 1241, 1473
SfcI	CTRYAG	3 cut(s)	319, 720, 1629
SfuI	TTCGAA	1 cut(s)	1459
SinI	GGWCC	2 cut(s)	1570, 2622
SmiMI	CAYNNNNRTG	4 cut(s)	1295, 1469, 1812, 2522
SmlI	CTYRAG	3 cut(s)	1012, 1226, 1253
SmoI	CTYRAG	3 cut(s)	1012, 1226, 1253
SnaBI	TACGTA	1 cut(s)	1994
SspMI	CTAG	6 cut(s)	282, 588, 1325, 1898, 2148, 2352
StyD4I	CCNGG	3 cut(s)	116, 925, 1690
TaaI	ACNGT	9 cut(s)	204, 500, 822, 1335, 1553, 1574, 1630, 1811, 2474
TaiI	ACGT	6 cut(s)	131, 1713, 1729, 1996, 2106, 2658
TaqI	TCGA	6 cut(s)	9, 146, 369, 811, 1459, 1821
TatI	WGTACW	1 cut(s)	1473
TauI	GCSGC	5 cut(s)	76, 79, 109, 175, 2684
Tru1I	TTAA	5 cut(s)	533, 834, 999, 1062, 2255
Tru9I	TTAA	5 cut(s)	533, 834, 999, 1062, 2255
TscAI	CASTG	4 cut(s)	1184, 1558, 1816, 1870
TseFI	GTSAC	4 cut(s)	87, 1152, 1356, 2468
TseI	GCWGC	6 cut(s)	321, 2060, 2081, 2357, 2366, 2720
Tsp45I	GTSAC	4 cut(s)	87, 1152, 1356, 2468
TspDTI	ATGAA	8 cut(s)	1203, 1427, 1839, 1946, 2216, 2268, 2475, 2666
TspGWI	ACGGA	6 cut(s)	54, 286, 831, 1058, 1196, 2601
TspRI	CASTG	4 cut(s)	1184, 1558, 1816, 1870
Tth111I	GACNNNGTC	1 cut(s)	365
VpaK11BI	GGWCC	2 cut(s)	1570, 2622
XapI	RAATTY	8 cut(s)	784, 1118, 1481, 1841, 1922, 2029, 2552, 2611
XbaI	TCTAGA	1 cut(s)	587
XceI	RCATGY	3 cut(s)	104, 1141, 2123
XmiI	GTMKAC	1 cut(s)	2658
XmnI	GAANNNNTTC	2 cut(s)	1266, 1710
XspI	CTAG	6 cut(s)	282, 588, 1325, 1898, 2148, 2352
ZraI	GACGTC	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	1268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.