Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0009585

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG308500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2778 bp

ATGGAGTCCGATTCAGACTCAGATGGCTCTCACATCTCGGCCACTCCGCCGCGGCCAAAGCCCACCCTTATCTCCAGACCTAGGTCCTCTCAATCCAACTCAAAAGCCAAAAAGCTCTTCTCCGAACCCCCGGCCCCCGCCAGACCCGACCCGTCTCCTCTTCTCTCCTTCGATTTACCTTTCCAGATACTCCGCCGCCCGCCCGGTCAAACCCTGATCCCGACCGTCTATTCCTTCGTCACTCCCGGCTACTTCTCCAAATCGGCGCCGTCGTTCTCCAAAAACCGACGTGTCAGCATCGATTTCGATCCGGACACATACGACCCGCCGTCTACTTTCTCACCGCCGAGTCCAAAGCCTCAGCCGGAGGCTGGTATCTCTGGATCTAACTATTCTGCCGCCGATTGGGTACCGCCGCAGCCGGAGCCCAAAGTTGAAGTTGCTAACAGGTCTGGGGTTTCATCCAAAATTGTGAAGAAAAACGTCAATCTGATTCGAGGTAATGCTCCTTTGCCGCCGGTGAAGCTCAAAGGCGGAGCCGAAGGGAACTTTGTGAAGCTCAACCTGAACGGAAGGAAGCGCAAGTTTCTGAACAAGGGCAGAAGAGGAAGTTTCAGTTCTTCAAGTCGTCGGAAATTTTACCGGAAAGGTAAAAGAAAATTGACAGCGCAAGATGGAAATGAAGGAGATGAAGATGGCTTGGTTACAAAGGCAATTGCAGAGCAACAGATTCGGAGCCAGGAGGACAGTAAAAGGGCCAAGAAATTCGACCTGGAAGCGTTTGAAGAGGCGGTTGGGGCGGCTCGGAGTGAGCCGTCCGATGAGAACTTGGTGAAGCTGTTGAGGCTGACTTATGGCTATGATTCGTTCCGAGATGGGCAGCTGGAGGCAATCAAGATGGTGCTGGCCGGAGATTCGACCATGGTTGTTCTGCCGACGGGTGCCGGCAAGTCTTTGTGTTATCAGTTGCCTGCTGTGATTTTACCTGGGGTGACTTTGGTTGTTAGTCCATTGATTGCATTGATGATTGACCAGCTCAAGCAGCTTCCTCATATGATTCGCGGTGGTCTTCTTTGTAGTAGTCAGACACTGGAAGAAGTTTCCGGGACGATTAGGCTGGTTCAAGAAGGGGGCATAAAAGTGCTTTTCGTCTCCCCAGAGAGATTCTTGAATGGAGAATTCCTGTCTATATTTTCTGCCACTCCTATATCTCTTGTTGTGGTGGATGAAGCTCATTGTGTATCTGAATGGTCACACAATTTCCGGCCATCATATATGAGGCTCAGAGCTTCTATGCTTCGTGCCAAGCTCAATGTGAACTGCATTCTTGCAATGACAGCTACTGCCACAGCCACAACTTTGAGTTCTGTCATGTCAGCATTAGAGATTCCTCCAAACAATCTCATTCAAAAAGCCAACTTAAGGGATAATTTACAACTATCAGTGTCATCAAGTGGAAATAGAATGAAAGATCTGCTGAAGTTGATCAAGTCTACTTCCTTTAAGGATGTTCAGAGCATCATTATCTACTGCAAATTTCAGTTTGAAACAGAAATGATAAGCAGATACTTATGTGACAACAATATCAATGCAAAGAGTTACCACAGTGGTATCCCTTCAAAAGATCGTACGCGTGTGCAGGAGTTATTTTTTACTAACAAAATTAGAGTGGTTGTTGCAACTGTGGCCTTTGGCATGGGCCTTGACAAGAGGGATATTGGCTCTGTGATTCATTACACCTTACCAGAAAGCTTGGAGGAATATGTTCAGGAAATCGGACGAGCTGGACGGGATGGAAGGTTATCCTATTGCCATCTTTATTTTGATGACAACACATATTACAAACTTCGAAGTCTTATGTATAGTGATGGAGTGGATGAATATGTGGTAAACAAATTCCTCTGCCAAGTATTCACCAGTGATGAGAACTTGAAGGGAAAAATTTATTCTTTGGTTAAAGAAACTGCATCCCGCAAGTTTGATATGAAAGAAGAGGTGATGCTCACAATTCTAACGCAGTTGGAGTTGGGTGAAGTGCAGTATTTGCATTTACTTCCAGAGATAAATGTAACATGCATTTTGAATTTTCATAAGACTTCCCCAGTTTTGCTTGCTGAAAAGGATGTTCTCATTGCAGCAATTCTGAAGAAGTCTGAGACTAAGCATGGACAATGTGTGTTTGACATACCGACTATAGCAAATAGCATTGGAGTTACAACTACCATCCTAACAAACCATTTACAGAATTTAAAGTTGAAAGGAGAAGTAACATATGAAGTGAAGGACCAAGCCTACTGTTATACAATTGTGGAGGTCCCTGCAGATCTTTGTTCTCTATCAGCACAGCTTACAAAATGGCTATCAGAGGTTGAAAGTTGTAAGGTGCGGAAGTTGGATGCAATGTTTAATGCGGCAGTCTCTGCTGTTAATAACTGTGAGAAGATGGAAGGTCGTTCTGATGCCCAGCAAACACTATGTTTGCAAAGGAAGATTTTGGAGTATTTCAGTGAAGATAATGTTGATGTCCCTAATAAGATGGGTAAAAGCAGCCCATTTTTGCAAGCAGATATAAAAGTCTTTCTACGGAGCAATTCACAGGCCAAATTCACCCCCAGAGCTGTTGCAAGGATCATGCATGGCATTCCAAGTCCAGCATATGCTTCTGCATTTTGGTCTAAAACTCACTTCTGGGGAAGATATACGCATATAGACTTCCAGGCGGTAATGGAAGCAGCAAAGGTGGAATTGATCAATTTTGTGAGGAAGGATGCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

925

Amino Acids

102.97

Weight (kDa)

9.1

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	292 - 453	2.3e-22	DEAD/DEAH box helicase
Helicase_C	PF00271	489 - 599	2.5e-19	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27880 AT1G27880
fragaria_vesca	FvH4_4g24310 FvH4_4g24310
malus_domestica	MD16G1111900.v1.1
prunus_persica	Prupe.1G233100_v2.0.a1
pyrus_communis	pycom13g09790 pycom16g09490
rosa_chinensis	RchiOBHm_Chr4g0431111
rosa_laevigata	RLG00000006924
rosa_multiflora	Rmu_co7983982.1_g000001 Rmu_co8245775.1_g000001 Rmu_sc0040015.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372700
rosa_rugosa	Rorug04G0248100 Rorug04G0248200 Rorug04G0248300
rosa_samantha	Rh4AG304700 Rh4BG311900 Rh4CG328200 Rh4DG308500
rosa_wichuraiana	Rw4G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	409
AccB1I	GGYRCC	3 cut(s)	265, 409, 941
AccI	GTMKAC	2 cut(s)	332, 1493
AccII	CGCG	3 cut(s)	52, 1062, 1633
AccIII	TCCGGA	1 cut(s)	310
AclWI	GGATC	4 cut(s)	211, 302, 391, 2636
AcoI	YGGCCR	4 cut(s)	39, 53, 906, 1265
AcsI	RAATTY	9 cut(s)	635, 764, 1178, 1535, 1895, 1941, 2083, 2245, 2603
AcuI	CTGAAG	2 cut(s)	1499, 2165
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	2 cut(s)	411, 1630
AfiI	CCNNNNNNNGG	4 cut(s)	81, 371, 405, 1422
AflII	CTTAAG	1 cut(s)	1420
AflIII	ACRYGT	2 cut(s)	289, 1631
AhdI	GACNNNNNGTC	1 cut(s)	328
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	4 cut(s)	738, 771, 985, 2715
AjuI	GAANNNNNNNTTGG	4 cut(s)	101, 133, 777, 809
Alw26I	GTCTC	4 cut(s)	159, 1156, 2150, 2422
AlwI	GGATC	4 cut(s)	211, 302, 391, 2636
AlwNI	CAGNNNCTG	3 cut(s)	1090, 1343, 2420
Aor13HI	TCCGGA	1 cut(s)	310
AoxI	GGCC	9 cut(s)	39, 53, 132, 756, 906, 1265, 1686, 1699, 2598
ApeKI	GCWGC	6 cut(s)	418, 880, 1042, 2135, 2547, 2732
ApoI	RAATTY	9 cut(s)	635, 764, 1178, 1535, 1895, 1941, 2083, 2245, 2603
Asp700I	GAANNNNTTC	1 cut(s)	1764
Asp718I	GGTACC	1 cut(s)	409
AspA2I	CCTAGG	1 cut(s)	80
AspLEI	GCGC	3 cut(s)	268, 582, 670
AspS9I	GGNCC	6 cut(s)	84, 133, 756, 1699, 2284, 2314
AsuC2I	CCSGG	4 cut(s)	131, 204, 246, 1105
AsuHPI	GGTGA	8 cut(s)	333, 532, 844, 1003, 1906, 2008, 2042, 2599
AsuII	TTCGAA	1 cut(s)	1849
AvaII	GGWCC	3 cut(s)	84, 2284, 2314
AvrII	CCTAGG	1 cut(s)	80
BaeI	ACNNNNGTAYC	4 cut(s)	1558, 1591, 1594, 1627
BanI	GGYRCC	3 cut(s)	265, 409, 941
BanII	GRGCYC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	1061
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	6 cut(s)	430, 892, 1054, 2147, 2559, 2744
BceAI	ACGGC	3 cut(s)	253, 313, 799
BcgI	CGANNNNNNTGC	4 cut(s)	286, 320, 713, 747
BciT130I	CCWGG	4 cut(s)	740, 773, 987, 2717
BciVI	GTATCC	1 cut(s)	1622
BclI	TGATCA	2 cut(s)	1485, 2748
BcnI	CCSGG	4 cut(s)	131, 204, 246, 1105
BcoDI	GTCTC	4 cut(s)	159, 1156, 2150, 2422
BfaI	CTAG	2 cut(s)	81, 2776
BfmI	CTRYAG	2 cut(s)	2193, 2319
BfoI	RGCGCY	1 cut(s)	269
BfrI	CTTAAG	1 cut(s)	1420
BfuI	GTATCC	1 cut(s)	1622
BglII	AGATCT	2 cut(s)	1471, 2323
BlnI	CCTAGG	1 cut(s)	80
Bme1390I	CCNGG	8 cut(s)	131, 204, 246, 740, 773, 987, 1105, 2717
Bme18I	GGWCC	3 cut(s)	84, 2284, 2314
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	6 cut(s)	84, 133, 756, 1699, 2284, 2314
BmiI	GGNNCC	8 cut(s)	135, 267, 411, 426, 538, 737, 943, 2316
BmrFI	CCNGG	8 cut(s)	131, 204, 246, 740, 773, 987, 1105, 2717
BmrI	ACTGGG	1 cut(s)	2096
BmsI	GCATC	7 cut(s)	306, 1527, 1976, 1989, 2386, 2449, 2758
BmuI	ACTGGG	1 cut(s)	2096
BoxI	GACNNNNGTC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	1061
BpmI	CTGGAG	2 cut(s)	58, 905
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	1849
BpuEI	CTTGAG	1 cut(s)	1022
BpuMI	CCSGG	4 cut(s)	131, 204, 246, 1105
Bsa29I	ATCGAT	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	266
BsaJI	CCNNGG	5 cut(s)	50, 80, 129, 921, 986
BsaWI	WCCGGW	2 cut(s)	310, 642
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 371, 405, 1422
Bse118I	RCCGGY	2 cut(s)	517, 944
Bse1I	ACTGG	3 cut(s)	1095, 1917, 2102
Bse3DI	GCAATG	3 cut(s)	1338, 2130, 2406
Bse8I	GATNNNNATC	1 cut(s)	306
BseAI	TCCGGA	1 cut(s)	310
BseBI	CCWGG	4 cut(s)	740, 773, 987, 2717
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	5 cut(s)	50, 80, 129, 921, 986
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	4 cut(s)	81, 371, 405, 1422
BseMI	GCAATG	3 cut(s)	1338, 2130, 2406
BseMII	CTCAG	4 cut(s)	33, 374, 1297, 2145
BseNI	ACTGG	3 cut(s)	1095, 1917, 2102
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	6 cut(s)	430, 892, 1054, 2147, 2559, 2744
BseYI	CCCAGC	1 cut(s)	2463
BsgI	GTGCAG	2 cut(s)	1658, 2057
Bsh1236I	CGCG	3 cut(s)	52, 1062, 1633
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	9 cut(s)	41, 55, 134, 758, 908, 1267, 1688, 1701, 2600
BshNI	GGYRCC	3 cut(s)	265, 409, 941
BshVI	ATCGAT	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	225
BsiWI	CGTACG	1 cut(s)	1628
BslFI	GGGAC	3 cut(s)	1120, 2300, 2510
BslI	CCNNNNNNNGG	4 cut(s)	81, 371, 405, 1422
BsmAI	GTCTC	4 cut(s)	159, 1156, 2150, 2422
BsmBI	CGTCTC	2 cut(s)	159, 1156
BsmFI	GGGAC	3 cut(s)	1120, 2300, 2510
BsmI	GAATGC	2 cut(s)	1323, 2640
BsnI	GGCC	9 cut(s)	41, 55, 134, 758, 908, 1267, 1688, 1701, 2600
Bsp119I	TTCGAA	1 cut(s)	1849
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp13I	TCCGGA	1 cut(s)	310
Bsp143I	GATC	9 cut(s)	216, 307, 383, 1471, 1485, 1624, 2323, 2628, 2748
Bsp19I	CCATGG	1 cut(s)	921
BspANI	GGCC	9 cut(s)	41, 55, 134, 758, 908, 1267, 1688, 1701, 2600
BspCNI	CTCAG	4 cut(s)	32, 373, 1296, 2146
BspDI	ATCGAT	1 cut(s)	300
BspEI	TCCGGA	1 cut(s)	310
BspFNI	CGCG	3 cut(s)	52, 1062, 1633
BspLI	GGNNCC	8 cut(s)	135, 267, 411, 426, 538, 737, 943, 2316
BspMAI	CTGCAG	1 cut(s)	2323
BspPI	GGATC	4 cut(s)	211, 302, 391, 2636
BspQI	GCTCTTC	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	1849
BspT107I	GGYRCC	3 cut(s)	265, 409, 941
BspTI	CTTAAG	1 cut(s)	1420
BsrDI	GCAATG	3 cut(s)	1338, 2130, 2406
BsrFI	RCCGGY	2 cut(s)	517, 944
BsrI	ACTGG	3 cut(s)	1095, 1917, 2102
BssAI	RCCGGY	2 cut(s)	517, 944
BssECI	CCNNGG	5 cut(s)	50, 80, 129, 921, 986
BssMI	GATC	9 cut(s)	216, 307, 383, 1471, 1485, 1624, 2323, 2628, 2748
BssNI	GRCGYC	1 cut(s)	266
BssT1I	CCWWGG	2 cut(s)	80, 921
Bst2UI	CCWGG	4 cut(s)	740, 773, 987, 2717
Bst4CI	ACNGT	6 cut(s)	226, 749, 1607, 1684, 2297, 2435
Bst6I	CTCTTC	5 cut(s)	122, 165, 598, 780, 1986
BstACI	GRCGYC	1 cut(s)	266
BstAFI	CTTAAG	1 cut(s)	1420
BstAPI	GCANNNNNTGC	2 cut(s)	2044, 2420
BstBI	TTCGAA	1 cut(s)	1849
BstC8I	GCNNGC	6 cut(s)	200, 906, 946, 972, 2112, 2562
BstDEI	CTNAG	5 cut(s)	19, 360, 1283, 2154, 2160
BstDSI	CCRYGG	2 cut(s)	50, 921
BstFNI	CGCG	3 cut(s)	52, 1062, 1633
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	3 cut(s)	268, 582, 670
BstKTI	GATC	9 cut(s)	219, 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
BstMAI	GTCTC	4 cut(s)	159, 1156, 2150, 2422
BstMBI	GATC	9 cut(s)	216, 307, 383, 1471, 1485, 1624, 2323, 2628, 2748
BstMCI	CGRYCG	1 cut(s)	225
BstNI	CCWGG	4 cut(s)	740, 773, 987, 2717
BstNSI	RCATGY	1 cut(s)	2076
BstPAI	GACNNNNGTC	1 cut(s)	82
BstSCI	CCNGG	8 cut(s)	129, 202, 244, 738, 771, 985, 1103, 2715
BstSFI	CTRYAG	2 cut(s)	2193, 2319
BstUI	CGCG	3 cut(s)	52, 1062, 1633
BstV1I	GCAGC	6 cut(s)	430, 892, 1054, 2147, 2559, 2744
BstV2I	GAAGAC	1 cut(s)	1061
BstX2I	RGATCY	3 cut(s)	383, 1471, 2323
BstYI	RGATCY	3 cut(s)	383, 1471, 2323
Bsu15I	ATCGAT	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	1622
BsuRI	GGCC	9 cut(s)	41, 55, 134, 758, 908, 1267, 1688, 1701, 2600
BsuTUI	ATCGAT	1 cut(s)	300
BtgI	CCRYGG	2 cut(s)	50, 921
BtrI	CACGTC	1 cut(s)	290
BtsIMutI	CAGTG	5 cut(s)	1088, 1449, 1612, 1924, 2512
Cac8I	GCNNGC	6 cut(s)	200, 906, 946, 972, 2112, 2562
CaiI	CAGNNNCTG	3 cut(s)	1090, 1343, 2420
CfoI	GCGC	3 cut(s)	268, 582, 670
Cfr10I	RCCGGY	2 cut(s)	517, 944
Cfr13I	GGNCC	6 cut(s)	84, 133, 756, 1699, 2284, 2314
Cfr42I	CCGCGG	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	2 cut(s)	410, 1629
CviAII	CATG	7 cut(s)	922, 1372, 1696, 2073, 2165, 2632, 2636
CviQI	GTAC	2 cut(s)	410, 1629
DdeI	CTNAG	5 cut(s)	19, 360, 1283, 2154, 2160
DinI	GGCGCC	1 cut(s)	267
DpnI	GATC	9 cut(s)	218, 309, 385, 1473, 1487, 1626, 2325, 2630, 2750
DpnII	GATC	9 cut(s)	216, 307, 383, 1471, 1485, 1624, 2323, 2628, 2748
DraI	TTTAAA	1 cut(s)	2250
DriI	GACNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	4 cut(s)	39, 53, 906, 1265
Eam1104I	CTCTTC	5 cut(s)	122, 165, 598, 780, 1986
Eam1105I	GACNNNNNGTC	1 cut(s)	328
EarI	CTCTTC	5 cut(s)	122, 165, 598, 780, 1986
EciI	GGCGGA	3 cut(s)	36, 182, 549
Eco130I	CCWWGG	2 cut(s)	80, 921
Eco24I	GRGCYC	1 cut(s)	429
Eco47I	GGWCC	3 cut(s)	84, 2284, 2314
Eco57I	CTGAAG	2 cut(s)	1499, 2165
EcoO109I	RGGNCCY	2 cut(s)	84, 2314
EcoRI	GAATTC	1 cut(s)	1178
EcoRII	CCWGG	4 cut(s)	738, 771, 985, 2715
EcoT14I	CCWWGG	2 cut(s)	80, 921
EcoT22I	ATGCAT	2 cut(s)	2078, 2637
EcoT38I	GRGCYC	1 cut(s)	429
EgeI	GGCGCC	1 cut(s)	267
EheI	GGCGCC	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	80, 921
Esp3I	CGTCTC	2 cut(s)	159, 1156
FaeI	CATG	7 cut(s)	925, 1375, 1699, 2076, 2168, 2635, 2639
FaqI	GGGAC	3 cut(s)	1120, 2300, 2510
FatI	CATG	7 cut(s)	921, 1371, 1695, 2072, 2164, 2631, 2635
FauI	CCCGC	4 cut(s)	145, 207, 333, 1979
FauNDI	CATATG	3 cut(s)	1053, 2272, 2656
FbaI	TGATCA	2 cut(s)	1485, 2748
FblI	GTMKAC	2 cut(s)	332, 1493
FokI	GGATG	9 cut(s)	448, 1238, 1520, 1805, 1889, 1954, 2135, 2210, 2408
FriOI	GRGCYC	1 cut(s)	429
FspBI	CTAG	2 cut(s)	81, 2776
GlaI	GCGC	3 cut(s)	267, 581, 669
GsaI	CCCAGC	1 cut(s)	2467
GsuI	CTGGAG	2 cut(s)	58, 905
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	9 cut(s)	41, 55, 134, 758, 908, 1267, 1688, 1701, 2600
HhaI	GCGC	3 cut(s)	268, 582, 670
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	7 cut(s)	925, 1375, 1699, 2076, 2168, 2635, 2639
Hin6I	GCGC	3 cut(s)	266, 580, 668
HinP1I	GCGC	3 cut(s)	266, 580, 668
HindIII	AAGCTT	1 cut(s)	1750
HphI	GGTGA	8 cut(s)	333, 532, 844, 1003, 1906, 2008, 2042, 2599
Hpy166II	GTNNAC	4 cut(s)	333, 1318, 1494, 1891
Hpy8I	GTNNAC	4 cut(s)	333, 1318, 1494, 1891
Hpy99I	CGWCG	4 cut(s)	274, 291, 633, 940
HpyCH4III	ACNGT	6 cut(s)	226, 749, 1607, 1684, 2297, 2435
HpyCH4IV	ACGT	2 cut(s)	289, 483
HpyF3I	CTNAG	5 cut(s)	19, 360, 1283, 2154, 2160
HpySE526I	ACGT	2 cut(s)	289, 483
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	7 cut(s)	925, 1375, 1699, 2076, 2168, 2635, 2639
HspAI	GCGC	3 cut(s)	266, 580, 668
KasI	GGCGCC	1 cut(s)	265
Kpn2I	TCCGGA	1 cut(s)	310
KpnI	GGTACC	1 cut(s)	413
KroI	GCCGGC	1 cut(s)	944
KroNI	GCCGGC	1 cut(s)	946
Ksp22I	TGATCA	2 cut(s)	1485, 2748
KspI	CCGCGG	1 cut(s)	53
Kzo9I	GATC	9 cut(s)	216, 307, 383, 1471, 1485, 1624, 2323, 2628, 2748
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	5 cut(s)	424, 511, 536, 735, 2586
Lsp1109I	GCAGC	6 cut(s)	430, 892, 1054, 2147, 2559, 2744
LweI	GCATC	7 cut(s)	306, 1527, 1976, 1989, 2386, 2449, 2758
MaeI	CTAG	2 cut(s)	81, 2776
MaeII	ACGT	2 cut(s)	289, 483
MaeIII	GTNAC	9 cut(s)	238, 703, 991, 1251, 1574, 1598, 2068, 2212, 2266
MalI	GATC	9 cut(s)	218, 309, 385, 1473, 1487, 1626, 2325, 2630, 2750
MboI	GATC	9 cut(s)	216, 307, 383, 1471, 1485, 1624, 2323, 2628, 2748
MfeI	CAATTG	2 cut(s)	714, 2304
MflI	RGATCY	3 cut(s)	383, 1471, 2323
MhlI	GDGCHC	1 cut(s)	429
MluI	ACGCGT	1 cut(s)	1631
Mly113I	GGCGCC	1 cut(s)	266
MlyI	GAGTC	3 cut(s)	11, 14, 358
MmeI	TCCRAC	4 cut(s)	120, 611, 2001, 2373
Mph1103I	ATGCAT	2 cut(s)	2078, 2637
MroI	TCCGGA	1 cut(s)	310
MroNI	GCCGGC	1 cut(s)	944
MroXI	GAANNNNTTC	1 cut(s)	1764
MseI	TTAA	6 cut(s)	1421, 1503, 1956, 2249, 2406, 2427
MslI	CAYNNNNRTG	1 cut(s)	1139
MspA1I	CMGCKG	2 cut(s)	52, 883
MspCI	CTTAAG	1 cut(s)	1420
MspR9I	CCNGG	8 cut(s)	131, 204, 246, 740, 773, 987, 1105, 2717
MunI	CAATTG	2 cut(s)	714, 2304
Mva1269I	GAATGC	2 cut(s)	1323, 2640
MvaI	CCWGG	4 cut(s)	740, 773, 987, 2717
MvnI	CGCG	3 cut(s)	52, 1062, 1633
NaeI	GCCGGC	1 cut(s)	946
NarI	GGCGCC	1 cut(s)	266
NciI	CCSGG	4 cut(s)	131, 204, 246, 1105
NcoI	CCATGG	1 cut(s)	921
NdeI	CATATG	3 cut(s)	1053, 2272, 2656
NdeII	GATC	9 cut(s)	216, 307, 383, 1471, 1485, 1624, 2323, 2628, 2748
NgoMIV	GCCGGC	1 cut(s)	944
NlaIII	CATG	7 cut(s)	925, 1375, 1699, 2076, 2168, 2635, 2639
NlaIV	GGNNCC	8 cut(s)	135, 267, 411, 426, 538, 737, 943, 2316
NmeAIII	GCCGAG	2 cut(s)	17, 372
NmuCI	GTSAC	4 cut(s)	238, 991, 1251, 1574
NsiI	ATGCAT	2 cut(s)	2078, 2637
NspI	RCATGY	1 cut(s)	2076
NspV	TTCGAA	1 cut(s)	1849
PciSI	GCTCTTC	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PctI	GAATGC	2 cut(s)	1323, 2640
PdiI	GCCGGC	1 cut(s)	946
PdmI	GAANNNNTTC	1 cut(s)	1764
PfeI	GAWTC	9 cut(s)	11, 493, 730, 863, 914, 1057, 1164, 1387, 1729
Pfl23II	CGTACG	1 cut(s)	1628
PfoI	TCCNGGA	1 cut(s)	1103
PleI	GAGTC	3 cut(s)	11, 13, 357
PluTI	GGCGCC	1 cut(s)	269
PpsI	GAGTC	3 cut(s)	11, 13, 357
PpuMI	RGGWCCY	2 cut(s)	84, 2314
PshAI	GACNNNNGTC	1 cut(s)	82
Psp5II	RGGWCCY	2 cut(s)	84, 2314
Psp6I	CCWGG	4 cut(s)	738, 771, 985, 2715
PspFI	CCCAGC	1 cut(s)	2463
PspGI	CCWGG	4 cut(s)	738, 771, 985, 2715
PspLI	CGTACG	1 cut(s)	1628
PspN4I	GGNNCC	8 cut(s)	135, 267, 411, 426, 538, 737, 943, 2316
PspPI	GGNCC	6 cut(s)	84, 133, 756, 1699, 2284, 2314
PspPPI	RGGWCCY	2 cut(s)	84, 2314
PstI	CTGCAG	1 cut(s)	2323
PstNI	CAGNNNCTG	3 cut(s)	1090, 1343, 2420
PsuI	RGATCY	3 cut(s)	383, 1471, 2323
PvuII	CAGCTG	1 cut(s)	883
RsaI	GTAC	2 cut(s)	411, 1630
RsaNI	GTAC	2 cut(s)	410, 1629
RseI	CAYNNNNRTG	1 cut(s)	1139
SacII	CCGCGG	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	6 cut(s)	1421, 1503, 1956, 2249, 2406, 2427
Sau3AI	GATC	9 cut(s)	216, 307, 383, 1471, 1485, 1624, 2323, 2628, 2748
Sau96I	GGNCC	6 cut(s)	84, 133, 756, 1699, 2284, 2314
SchI	GAGTC	3 cut(s)	11, 14, 358
ScrFI	CCNGG	8 cut(s)	131, 204, 246, 740, 773, 987, 1105, 2717
SduI	GDGCHC	1 cut(s)	429
SfaNI	GCATC	7 cut(s)	306, 1527, 1976, 1989, 2386, 2449, 2758
SfcI	CTRYAG	2 cut(s)	2193, 2319
SfoI	GGCGCC	1 cut(s)	267
Sfr303I	CCGCGG	1 cut(s)	53
SfuI	TTCGAA	1 cut(s)	1849
SgrAI	CRCCGGYG	1 cut(s)	517
SgrBI	CCGCGG	1 cut(s)	53
SinI	GGWCC	3 cut(s)	84, 2284, 2314
SmiMI	CAYNNNNRTG	1 cut(s)	1139
SmlI	CTYRAG	2 cut(s)	1037, 1420
SmoI	CTYRAG	2 cut(s)	1037, 1420
SspDI	GGCGCC	1 cut(s)	265
SspMI	CTAG	2 cut(s)	81, 2776
StyD4I	CCNGG	8 cut(s)	129, 202, 244, 738, 771, 985, 1103, 2715
StyI	CCWWGG	2 cut(s)	80, 921
TaaI	ACNGT	6 cut(s)	226, 749, 1607, 1684, 2297, 2435
TaiI	ACGT	2 cut(s)	292, 486
TaqI	TCGA	7 cut(s)	171, 300, 306, 496, 768, 917, 1849
TauI	GCSGC	8 cut(s)	52, 55, 198, 401, 418, 517, 803, 2414
TfiI	GAWTC	9 cut(s)	11, 493, 730, 863, 914, 1057, 1164, 1387, 1729
Tru1I	TTAA	6 cut(s)	1421, 1503, 1956, 2249, 2406, 2427
Tru9I	TTAA	6 cut(s)	1421, 1503, 1956, 2249, 2406, 2427
TscAI	CASTG	5 cut(s)	1095, 1449, 1612, 1924, 2512
TseFI	GTSAC	4 cut(s)	238, 991, 1251, 1574
TseI	GCWGC	6 cut(s)	418, 880, 1042, 2135, 2547, 2732
Tsp45I	GTSAC	4 cut(s)	238, 991, 1251, 1574
TspGWI	ACGGA	2 cut(s)	585, 2599
TspRI	CASTG	5 cut(s)	1095, 1449, 1612, 1924, 2512
Vha464I	CTTAAG	1 cut(s)	1420
VpaK11BI	GGWCC	3 cut(s)	84, 2284, 2314
XapI	RAATTY	9 cut(s)	635, 764, 1178, 1535, 1895, 1941, 2083, 2245, 2603
XceI	RCATGY	1 cut(s)	2076
XmaJI	CCTAGG	1 cut(s)	80
XmiI	GTMKAC	2 cut(s)	332, 1493
XmnI	GAANNNNTTC	1 cut(s)	1764
XspI	CTAG	2 cut(s)	81, 2776
Zsp2I	ATGCAT	2 cut(s)	2078, 2637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.