Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009585

Physical Location & Seq

Genomic Coordinates Reverse (-)

54079683 .. 54087765

Gene Structure 8083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2880 bp

ATGGCACGCTGTTTTGATGACGTAATTGTAAAGTTTTCGCTTGTCATTAGGCTGATAATAGTGAGAGATAGAGGCATTGTTGGAGATTACCAGTCTCGTGATGACGGCTCTCACATCTCAGCGACTCCGCCGCGGCCAAAGCCCGCCCTTATCTCCAGACCTAGGTCCTCTCAATCCAACTCAAAAGCCAAAAAGCTCTTCTCCGAACCCCCGGCCCCCGCCAGACCCGACCCGTCTCCTCTTCTCTCCTCCGATTTACCTTTCCAGATACTCCGCCGCCCGCCCGGTCAAACCCTCGCTATCCCGACCGTCGATTCCTTCGTCACTCCCGGCTACTTCTCCAAATCGGCGCCGTCGTTCTCGAAAAACAGACGTGTCAGCATCGATTTCGATCCGGACACCTACGACCCGCCGTCTACTTTCTCACCGCCGAATCCAAAGCCTCAGCCGGAGGCTGGTATCTCTGGATCTAACTATTCTGCCGCCGATTGGGTACCGCCGCAGCCGGATCCCAAAGTTGAAGTTGCTAATAGGTCTGCGGTTTCATCCAAAATTGTGAAGAAAAACGTCAATCTGATTCGAGGTAATGCTCCTTTGCCGCCGGTGAAGCTCAAAGGCGGAGCCGAAGGGAACTTTGTGAAGCTCAACCTGAACGGAAGGAAGCGCAAGTTTCTGAACAAGGGCAGAAGAGGAAGTACCAGTTCTTCAAGTCGTCGGAAATTTTACCGGAAAGGTAAAAGAAAATTGACAGCGCAAGATGGAAATGAAGGAGATGAAGATGGCTTGGTTACAGAGGCAATTGCAGAGCAACAGATTCGGAGCCAGGAGGACAGTAAAAGAGCCAAGAAATTCGACCTGGAACCGTTTGAAGAGGCGGTTGCGGCGGCTCGGAGTGAGCAGTCCGATGAGAACTTGGTGAAGCTGTTGAGGCTGACTTATGGCTATGATTCGTTCCGAGATGGGCAGCTGGAGGCAATCAAGATGGTGCTGGCCGGAGATTCGACCATGGTTGTTCTGCCGACGGGCGCCGGCAAGTCTTTGTGTTATCAGTTGCCTGCTGTGATTTTACCTGGGGTGACTTTGGTTGTTAGTCCATTGATTGCATTGATGATTGACCAGCTCAAGCAGCTTCCTCATATGATTCGCGGTGGTCTTCTTTGTAGTAGTCAGACACTGGAAGAAGTTTCCGGGACGATTAGGCTGGTTCAAGAAGGGGGCATAAAAGTGCTTTTCGTCTCCCCAGAGAGATTCTTGAATGGAGAATTCCTGTCTATATTTTCTGCCACTCCTATATCTCTTGTTGTGGTGGATGAAGCTCATTGTGTATCTGAATGGTCACACAATTTCCGGCCATCATATATGAGGCTCAGAGCTTCTATGCTTCGTGCGAAGCTCAATGTGAACTGCATTCTTGCAATGACAGCTACTGCCACAGCCACAACTTTGAGTTCTGTCATGTCAGCTTTAGAGATTCCTCCAAACAATCTCATTCAAAAAGCCAACTTAAGGGATAATTTACAACTATCAGTGTCATCAAGTGGAAATAGGCAAGTAATGAAAGATCTGCTGAAGTTGATCAAGTCTACTTCCTTTAAGGATGTTCAGAGCATCATTATCTACTGCAAATTTCAGTTTGAAACAGAAATGATAAGCAGATACTTATGTGACAACAATATCAATGCAAAGAGTTACCACAGTGGTATCCCTTCAAAAGATCGTAAACGTGTGCAGGAGTTATTTTTTACTAACAAAATTAGAGTGGTTGTTGCGACTGTGGCCTTTGGCATGGGCCTTGACAAGAGGGATATTGGCTCTGTGATTCATTACACCTTACCAGAAAGCTTGGAGGAATATGTTCAGGAAATCGGACGAGCTGGTCGGGATGGAAGGTCATCCTATTGCCATCTTTATTTTGATGACAACACATATTACAAACTTCGAAGTCTTATGTATAGTGATGGAGTGGATGAATATGTGGTAAACAAATTCCTCTGCCAAGTATTCACCAGTGATGAGAACTTGAAGGGAAAAATTTATTCGCTGGTTAAAGAAACTGCATCCCGCAAGTTTGATATGAAAGAAGAGGTGATGCTCACAATTCTAACGCAGTTGGAGTTGGGTGAAGTGCAGTATTTGCATTTACTTCCAGAGATAAATGTAACATGCATTTTGAATTTTCATAAGACTTCCCCAGTTTTGCTTGCTGAAAAGGATGTTCTTATTGCAGCAATTCTGAAGAAGTCTGAGACTAAGCACGGACAATGTGTGTTTGACATACCGACTATAGCAAATAGCATTGGAGTTACAACTACCATCCTAACAAACCATTTACAGAATTTAAAGTTGAAAGGAGAAGTAACATATGAAGTGAAGGACCAAGCCTACTGTTTTACAATTGTGGAGGTCCCTGCAGATCTTTGTTCTCTATCAGCACAGCTTACAAAATGGCTATCAGAGGTTGAAAGTTGTAAGGTGCGGAAGTTGGATGCAATGTTTAATGCGGCAGTCTCTGCTGTTAATAACTGTGAGAAGATGGAAAGTTGTTCTGATGCCCAGCAAACACTATGTTTGCAAAGGAAGATTGTGGAGTATTTCAGTGAAGATAATGTTGATATTACTTTTACTGATGGCATTACCATTTACATGTGCAGCCCATTTTTGCAAGCAGATATAAAAGTCTTTCTACGGAGCAATTCACAGGCCAAATTCACCCCCAGAGCTGTTGCAAGGATCATGCATGGCATTCCAAGTCCAGCATATGCTTCTGCATTTTGGTCTAAAACTCACTTCTGGGGAAGATATACCCATATAGACTTCCAGGTGGTAATGGAAGCAGCAAAGGCGGAATTGATCAATTTTGTGAGGAAGGATGCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

959

Amino Acids

106.85

Weight (kDa)

8.98

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	320 - 481	2.4e-22	DEAD/DEAH box helicase
Helicase_C	PF00271	520 - 629	2.4e-19	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27880 AT1G27880
fragaria_vesca	FvH4_4g24310 FvH4_4g24310
malus_domestica	MD16G1111900.v1.1
prunus_persica	Prupe.1G233100_v2.0.a1
pyrus_communis	pycom13g09790 pycom16g09490
rosa_chinensis	RchiOBHm_Chr4g0431111
rosa_laevigata	RLG00000006924
rosa_multiflora	Rmu_co7983982.1_g000001 Rmu_co8245775.1_g000001 Rmu_sc0040015.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372700
rosa_rugosa	Rorug04G0248100 Rorug04G0248200 Rorug04G0248300
rosa_samantha	Rh4AG304700 Rh4BG311900 Rh4CG328200 Rh4DG308500
rosa_wichuraiana	Rw4G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1875
Acc65I	GGTACC	1 cut(s)	493
AccB1I	GGYRCC	3 cut(s)	349, 493, 1025
AccI	GTMKAC	2 cut(s)	416, 1583
AccII	CGCG	2 cut(s)	133, 1146
AccIII	TCCGGA	1 cut(s)	394
AclWI	GGATC	5 cut(s)	386, 475, 503, 516, 2738
AcoI	YGGCCR	3 cut(s)	134, 990, 1349
AcsI	RAATTY	9 cut(s)	719, 848, 1262, 1625, 1985, 2031, 2173, 2335, 2705
AcuI	CTGAAG	2 cut(s)	1589, 2255
AcyI	GRCGYC	2 cut(s)	350, 1026
AfaI	GTAC	2 cut(s)	495, 697
AfiI	CCNNNNNNNGG	4 cut(s)	162, 455, 489, 1506
AflII	CTTAAG	1 cut(s)	1504
AflIII	ACRYGT	3 cut(s)	373, 1723, 2643
AhdI	GACNNNNNGTC	1 cut(s)	412
AjiI	CACGTC	1 cut(s)	374
AjnI	CCWGG	4 cut(s)	822, 855, 1069, 2817
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
Alw26I	GTCTC	5 cut(s)	99, 240, 1240, 2240, 2512
AlwI	GGATC	5 cut(s)	386, 475, 503, 516, 2738
AlwNI	CAGNNNCTG	3 cut(s)	1174, 1427, 2510
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	7 cut(s)	134, 213, 990, 1349, 1776, 1789, 2700
ApeKI	GCWGC	6 cut(s)	502, 964, 1126, 2225, 2649, 2834
ApoI	RAATTY	9 cut(s)	719, 848, 1262, 1625, 1985, 2031, 2173, 2335, 2705
Asp700I	GAANNNNTTC	1 cut(s)	1854
Asp718I	GGTACC	1 cut(s)	493
AspA2I	CCTAGG	1 cut(s)	161
AspLEI	GCGC	4 cut(s)	352, 666, 754, 1028
AspS9I	GGNCC	5 cut(s)	165, 214, 1789, 2374, 2404
AsuC2I	CCSGG	4 cut(s)	212, 285, 330, 1189
AsuHPI	GGTGA	8 cut(s)	417, 616, 928, 1087, 1996, 2098, 2132, 2701
AsuII	TTCGAA	1 cut(s)	1939
AvaII	GGWCC	3 cut(s)	165, 2374, 2404
AvrII	CCTAGG	1 cut(s)	161
BaeI	ACNNNNGTAYC	4 cut(s)	1648, 1681, 1684, 1717
BamHI	GGATCC	1 cut(s)	508
BanI	GGYRCC	3 cut(s)	349, 493, 1025
BarI	GAAGNNNNNNTAC	4 cut(s)	679, 688, 711, 720
BauI	CACGAG	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	1145
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	6 cut(s)	514, 976, 1138, 2237, 2661, 2846
BceAI	ACGGC	3 cut(s)	121, 337, 397
BcgI	CGANNNNNNTGC	4 cut(s)	370, 404, 797, 831
BciT130I	CCWGG	4 cut(s)	824, 857, 1071, 2819
BciVI	GTATCC	1 cut(s)	1712
BclI	TGATCA	2 cut(s)	1575, 2850
BcnI	CCSGG	4 cut(s)	212, 285, 330, 1189
BcoDI	GTCTC	5 cut(s)	99, 240, 1240, 2240, 2512
BfaI	CTAG	2 cut(s)	162, 2878
BfmI	CTRYAG	2 cut(s)	2283, 2409
BfoI	RGCGCY	2 cut(s)	353, 1029
BfrI	CTTAAG	1 cut(s)	1504
BfuI	GTATCC	1 cut(s)	1712
BglII	AGATCT	2 cut(s)	1561, 2413
BlnI	CCTAGG	1 cut(s)	161
Bme1390I	CCNGG	8 cut(s)	212, 285, 330, 824, 857, 1071, 1189, 2819
Bme18I	GGWCC	3 cut(s)	165, 2374, 2404
BmeRI	GACNNNNNGTC	1 cut(s)	412
BmgBI	CACGTC	1 cut(s)	374
BmgT120I	GGNCC	5 cut(s)	165, 214, 1789, 2374, 2404
BmiI	GGNNCC	9 cut(s)	216, 351, 495, 510, 622, 821, 861, 1027, 2406
BmrFI	CCNGG	8 cut(s)	212, 285, 330, 824, 857, 1071, 1189, 2819
BmrI	ACTGGG	1 cut(s)	2186
BmsI	GCATC	7 cut(s)	390, 1617, 2066, 2079, 2476, 2539, 2860
BmuI	ACTGGG	1 cut(s)	2186
BoxI	GACNNNNGTC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	1145
BpmI	CTGGAG	2 cut(s)	139, 989
Bpu10I	CCTNAGC	1 cut(s)	444
Bpu14I	TTCGAA	1 cut(s)	1939
BpuEI	CTTGAG	1 cut(s)	1106
BpuMI	CCSGG	4 cut(s)	212, 285, 330, 1189
Bsa29I	ATCGAT	1 cut(s)	384
BsaBI	GATNNNNATC	1 cut(s)	390
BsaHI	GRCGYC	2 cut(s)	350, 1026
BsaJI	CCNNGG	5 cut(s)	131, 161, 210, 1005, 1070
BsaWI	WCCGGW	2 cut(s)	394, 726
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 455, 489, 1506
Bse118I	RCCGGY	2 cut(s)	601, 1028
Bse1I	ACTGG	5 cut(s)	91, 699, 1179, 2007, 2192
Bse3DI	GCAATG	2 cut(s)	1422, 2496
Bse8I	GATNNNNATC	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	4 cut(s)	824, 857, 1071, 2819
BseCI	ATCGAT	1 cut(s)	384
BseDI	CCNNGG	5 cut(s)	131, 161, 210, 1005, 1070
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	4 cut(s)	162, 455, 489, 1506
BseMI	GCAATG	2 cut(s)	1422, 2496
BseMII	CTCAG	4 cut(s)	132, 458, 1381, 2235
BseNI	ACTGG	5 cut(s)	91, 699, 1179, 2007, 2192
BseRI	GAGGAG	2 cut(s)	228, 238
BseXI	GCAGC	6 cut(s)	514, 976, 1138, 2237, 2661, 2846
BseYI	CCCAGC	1 cut(s)	2553
BsgI	GTGCAG	3 cut(s)	1748, 2147, 2668
Bsh1236I	CGCG	2 cut(s)	133, 1146
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	7 cut(s)	136, 215, 992, 1351, 1778, 1791, 2702
BshNI	GGYRCC	3 cut(s)	349, 493, 1025
BshVI	ATCGAT	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	309
BslFI	GGGAC	2 cut(s)	1204, 2390
BslI	CCNNNNNNNGG	4 cut(s)	162, 455, 489, 1506
BsmAI	GTCTC	5 cut(s)	99, 240, 1240, 2240, 2512
BsmBI	CGTCTC	2 cut(s)	240, 1240
BsmFI	GGGAC	2 cut(s)	1204, 2390
BsmI	GAATGC	2 cut(s)	1407, 2742
BsnI	GGCC	7 cut(s)	136, 215, 992, 1351, 1778, 1791, 2702
Bsp119I	TTCGAA	1 cut(s)	1939
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	9 cut(s)	391, 467, 508, 1561, 1575, 1714, 2413, 2730, 2850
Bsp19I	CCATGG	1 cut(s)	1005
BspANI	GGCC	7 cut(s)	136, 215, 992, 1351, 1778, 1791, 2702
BspCNI	CTCAG	4 cut(s)	131, 457, 1380, 2236
BspDI	ATCGAT	1 cut(s)	384
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	2 cut(s)	133, 1146
BspLI	GGNNCC	9 cut(s)	216, 351, 495, 510, 622, 821, 861, 1027, 2406
BspMAI	CTGCAG	1 cut(s)	2413
BspPI	GGATC	5 cut(s)	386, 475, 503, 516, 2738
BspQI	GCTCTTC	1 cut(s)	203
BspT104I	TTCGAA	1 cut(s)	1939
BspT107I	GGYRCC	3 cut(s)	349, 493, 1025
BspTI	CTTAAG	1 cut(s)	1504
BsrDI	GCAATG	2 cut(s)	1422, 2496
BsrFI	RCCGGY	2 cut(s)	601, 1028
BsrI	ACTGG	5 cut(s)	91, 699, 1179, 2007, 2192
BssAI	RCCGGY	2 cut(s)	601, 1028
BssECI	CCNNGG	5 cut(s)	131, 161, 210, 1005, 1070
BssMI	GATC	9 cut(s)	391, 467, 508, 1561, 1575, 1714, 2413, 2730, 2850
BssNI	GRCGYC	2 cut(s)	350, 1026
BssSI	CACGAG	1 cut(s)	96
BssT1I	CCWWGG	2 cut(s)	161, 1005
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	4 cut(s)	824, 857, 1071, 2819
Bst4CI	ACNGT	7 cut(s)	310, 833, 864, 1697, 1774, 2387, 2525
Bst6I	CTCTTC	5 cut(s)	203, 246, 682, 864, 2076
BstACI	GRCGYC	2 cut(s)	350, 1026
BstAFI	CTTAAG	1 cut(s)	1504
BstAPI	GCANNNNNTGC	2 cut(s)	2134, 2510
BstBI	TTCGAA	1 cut(s)	1939
BstC8I	GCNNGC	8 cut(s)	7, 144, 281, 990, 1030, 1056, 2202, 2664
BstDEI	CTNAG	5 cut(s)	118, 444, 1367, 2244, 2250
BstDSI	CCRYGG	2 cut(s)	131, 1005
BstFNI	CGCG	2 cut(s)	133, 1146
BstH2I	RGCGCY	2 cut(s)	353, 1029
BstHHI	GCGC	4 cut(s)	352, 666, 754, 1028
BstKTI	GATC	9 cut(s)	394, 470, 511, 1564, 1578, 1717, 2416, 2733, 2853
BstMAI	GTCTC	5 cut(s)	99, 240, 1240, 2240, 2512
BstMBI	GATC	9 cut(s)	391, 467, 508, 1561, 1575, 1714, 2413, 2730, 2850
BstMCI	CGRYCG	1 cut(s)	309
BstNI	CCWGG	4 cut(s)	824, 857, 1071, 2819
BstNSI	RCATGY	2 cut(s)	2166, 2647
BstPAI	GACNNNNGTC	1 cut(s)	163
BstSCI	CCNGG	8 cut(s)	210, 283, 328, 822, 855, 1069, 1187, 2817
BstSFI	CTRYAG	2 cut(s)	2283, 2409
BstUI	CGCG	2 cut(s)	133, 1146
BstV1I	GCAGC	6 cut(s)	514, 976, 1138, 2237, 2661, 2846
BstV2I	GAAGAC	1 cut(s)	1145
BstX2I	RGATCY	4 cut(s)	467, 508, 1561, 2413
BstYI	RGATCY	4 cut(s)	467, 508, 1561, 2413
Bsu15I	ATCGAT	1 cut(s)	384
BsuI	GTATCC	1 cut(s)	1712
BsuRI	GGCC	7 cut(s)	136, 215, 992, 1351, 1778, 1791, 2702
BsuTUI	ATCGAT	1 cut(s)	384
BtgI	CCRYGG	2 cut(s)	131, 1005
BtrI	CACGTC	1 cut(s)	374
BtsIMutI	CAGTG	5 cut(s)	1172, 1533, 1702, 2014, 2602
Cac8I	GCNNGC	8 cut(s)	7, 144, 281, 990, 1030, 1056, 2202, 2664
CaiI	CAGNNNCTG	3 cut(s)	1174, 1427, 2510
CfoI	GCGC	4 cut(s)	352, 666, 754, 1028
Cfr10I	RCCGGY	2 cut(s)	601, 1028
Cfr13I	GGNCC	5 cut(s)	165, 214, 1789, 2374, 2404
Cfr42I	CCGCGG	1 cut(s)	134
ClaI	ATCGAT	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	494, 696
CviAII	CATG	7 cut(s)	1006, 1456, 1786, 2163, 2644, 2734, 2738
CviQI	GTAC	2 cut(s)	494, 696
DdeI	CTNAG	5 cut(s)	118, 444, 1367, 2244, 2250
DinI	GGCGCC	2 cut(s)	351, 1027
DpnI	GATC	9 cut(s)	393, 469, 510, 1563, 1577, 1716, 2415, 2732, 2852
DpnII	GATC	9 cut(s)	391, 467, 508, 1561, 1575, 1714, 2413, 2730, 2850
DraI	TTTAAA	1 cut(s)	2340
DrdI	GACNNNNNNGTC	1 cut(s)	1875
DriI	GACNNNNNGTC	1 cut(s)	412
DseDI	GACNNNNNNGTC	1 cut(s)	1875
EaeI	YGGCCR	3 cut(s)	134, 990, 1349
Eam1104I	CTCTTC	5 cut(s)	203, 246, 682, 864, 2076
Eam1105I	GACNNNNNGTC	1 cut(s)	412
EarI	CTCTTC	5 cut(s)	203, 246, 682, 864, 2076
EciI	GGCGGA	4 cut(s)	117, 263, 633, 2858
Eco130I	CCWWGG	2 cut(s)	161, 1005
Eco47I	GGWCC	3 cut(s)	165, 2374, 2404
Eco57I	CTGAAG	2 cut(s)	1589, 2255
EcoO109I	RGGNCCY	2 cut(s)	165, 2404
EcoRI	GAATTC	1 cut(s)	1262
EcoRII	CCWGG	4 cut(s)	822, 855, 1069, 2817
EcoT14I	CCWWGG	2 cut(s)	161, 1005
EcoT22I	ATGCAT	2 cut(s)	2168, 2739
EgeI	GGCGCC	2 cut(s)	351, 1027
EheI	GGCGCC	2 cut(s)	351, 1027
ErhI	CCWWGG	2 cut(s)	161, 1005
Esp3I	CGTCTC	2 cut(s)	240, 1240
FaeI	CATG	7 cut(s)	1009, 1459, 1789, 2166, 2647, 2737, 2741
FaqI	GGGAC	2 cut(s)	1204, 2390
FatI	CATG	7 cut(s)	1005, 1455, 1785, 2162, 2643, 2733, 2737
FauI	CCCGC	5 cut(s)	151, 226, 288, 417, 2069
FauNDI	CATATG	3 cut(s)	1137, 2362, 2758
FbaI	TGATCA	2 cut(s)	1575, 2850
FblI	GTMKAC	2 cut(s)	416, 1583
FspBI	CTAG	2 cut(s)	162, 2878
GlaI	GCGC	4 cut(s)	351, 665, 753, 1027
GsaI	CCCAGC	1 cut(s)	2557
GsuI	CTGGAG	2 cut(s)	139, 989
HaeII	RGCGCY	2 cut(s)	353, 1029
HaeIII	GGCC	7 cut(s)	136, 215, 992, 1351, 1778, 1791, 2702
HhaI	GCGC	4 cut(s)	352, 666, 754, 1028
Hin1I	GRCGYC	2 cut(s)	350, 1026
Hin1II	CATG	7 cut(s)	1009, 1459, 1789, 2166, 2647, 2737, 2741
Hin6I	GCGC	4 cut(s)	350, 664, 752, 1026
HinP1I	GCGC	4 cut(s)	350, 664, 752, 1026
HindIII	AAGCTT	1 cut(s)	1840
HphI	GGTGA	8 cut(s)	417, 616, 928, 1087, 1996, 2098, 2132, 2701
Hpy166II	GTNNAC	5 cut(s)	417, 1402, 1584, 1721, 1981
Hpy8I	GTNNAC	5 cut(s)	417, 1402, 1584, 1721, 1981
Hpy99I	CGWCG	4 cut(s)	314, 358, 717, 1024
HpyCH4III	ACNGT	7 cut(s)	310, 833, 864, 1697, 1774, 2387, 2525
HpyCH4IV	ACGT	4 cut(s)	21, 373, 567, 1723
HpyF3I	CTNAG	5 cut(s)	118, 444, 1367, 2244, 2250
HpySE526I	ACGT	4 cut(s)	21, 373, 567, 1723
Hsp92I	GRCGYC	2 cut(s)	350, 1026
Hsp92II	CATG	7 cut(s)	1009, 1459, 1789, 2166, 2647, 2737, 2741
HspAI	GCGC	4 cut(s)	350, 664, 752, 1026
KasI	GGCGCC	2 cut(s)	349, 1025
Kpn2I	TCCGGA	1 cut(s)	394
KpnI	GGTACC	1 cut(s)	497
KroI	GCCGGC	1 cut(s)	1028
KroNI	GCCGGC	1 cut(s)	1030
Ksp22I	TGATCA	2 cut(s)	1575, 2850
KspI	CCGCGG	1 cut(s)	134
Kzo9I	GATC	9 cut(s)	391, 467, 508, 1561, 1575, 1714, 2413, 2730, 2850
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	4 cut(s)	595, 620, 819, 2688
Lsp1109I	GCAGC	6 cut(s)	514, 976, 1138, 2237, 2661, 2846
LweI	GCATC	7 cut(s)	390, 1617, 2066, 2079, 2476, 2539, 2860
MaeI	CTAG	2 cut(s)	162, 2878
MaeII	ACGT	4 cut(s)	21, 373, 567, 1723
MaeIII	GTNAC	9 cut(s)	322, 787, 1075, 1335, 1664, 1688, 2158, 2302, 2356
MalI	GATC	9 cut(s)	393, 469, 510, 1563, 1577, 1716, 2415, 2732, 2852
MboI	GATC	9 cut(s)	391, 467, 508, 1561, 1575, 1714, 2413, 2730, 2850
MfeI	CAATTG	2 cut(s)	798, 2394
MflI	RGATCY	4 cut(s)	467, 508, 1561, 2413
Mly113I	GGCGCC	2 cut(s)	350, 1026
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	5 cut(s)	61, 201, 695, 2091, 2463
Mph1103I	ATGCAT	2 cut(s)	2168, 2739
MroI	TCCGGA	1 cut(s)	394
MroNI	GCCGGC	1 cut(s)	1028
MroXI	GAANNNNTTC	1 cut(s)	1854
MseI	TTAA	6 cut(s)	1505, 1593, 2046, 2339, 2496, 2517
MslI	CAYNNNNRTG	2 cut(s)	1223, 2642
MspA1I	CMGCKG	2 cut(s)	133, 967
MspCI	CTTAAG	1 cut(s)	1504
MspR9I	CCNGG	8 cut(s)	212, 285, 330, 824, 857, 1071, 1189, 2819
MunI	CAATTG	2 cut(s)	798, 2394
Mva1269I	GAATGC	2 cut(s)	1407, 2742
MvaI	CCWGG	4 cut(s)	824, 857, 1071, 2819
MvnI	CGCG	2 cut(s)	133, 1146
NaeI	GCCGGC	1 cut(s)	1030
NarI	GGCGCC	2 cut(s)	350, 1026
NciI	CCSGG	4 cut(s)	212, 285, 330, 1189
NcoI	CCATGG	1 cut(s)	1005
NdeI	CATATG	3 cut(s)	1137, 2362, 2758
NdeII	GATC	9 cut(s)	391, 467, 508, 1561, 1575, 1714, 2413, 2730, 2850
NgoMIV	GCCGGC	1 cut(s)	1028
NlaIII	CATG	7 cut(s)	1009, 1459, 1789, 2166, 2647, 2737, 2741
NlaIV	GGNNCC	9 cut(s)	216, 351, 495, 510, 622, 821, 861, 1027, 2406
NmuCI	GTSAC	4 cut(s)	322, 1075, 1335, 1664
NsiI	ATGCAT	2 cut(s)	2168, 2739
NspI	RCATGY	2 cut(s)	2166, 2647
NspV	TTCGAA	1 cut(s)	1939
PciI	ACATGT	1 cut(s)	2643
PciSI	GCTCTTC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 353
PctI	GAATGC	2 cut(s)	1407, 2742
PdiI	GCCGGC	1 cut(s)	1030
PdmI	GAANNNNTTC	1 cut(s)	1854
PfoI	TCCNGGA	1 cut(s)	1187
PleI	GAGTC	1 cut(s)	118
PluTI	GGCGCC	2 cut(s)	353, 1029
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	2 cut(s)	165, 2404
PscI	ACATGT	1 cut(s)	2643
PshAI	GACNNNNGTC	1 cut(s)	163
Psp5II	RGGWCCY	2 cut(s)	165, 2404
Psp6I	CCWGG	4 cut(s)	822, 855, 1069, 2817
PspFI	CCCAGC	1 cut(s)	2553
PspGI	CCWGG	4 cut(s)	822, 855, 1069, 2817
PspN4I	GGNNCC	9 cut(s)	216, 351, 495, 510, 622, 821, 861, 1027, 2406
PspPI	GGNCC	5 cut(s)	165, 214, 1789, 2374, 2404
PspPPI	RGGWCCY	2 cut(s)	165, 2404
PstI	CTGCAG	1 cut(s)	2413
PstNI	CAGNNNCTG	3 cut(s)	1174, 1427, 2510
PsuI	RGATCY	4 cut(s)	467, 508, 1561, 2413
PvuII	CAGCTG	1 cut(s)	967
RsaI	GTAC	2 cut(s)	495, 697
RsaNI	GTAC	2 cut(s)	494, 696
RseI	CAYNNNNRTG	2 cut(s)	1223, 2642
SacII	CCGCGG	1 cut(s)	134
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	6 cut(s)	1505, 1593, 2046, 2339, 2496, 2517
Sau3AI	GATC	9 cut(s)	391, 467, 508, 1561, 1575, 1714, 2413, 2730, 2850
Sau96I	GGNCC	5 cut(s)	165, 214, 1789, 2374, 2404
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	8 cut(s)	212, 285, 330, 824, 857, 1071, 1189, 2819
SfaNI	GCATC	7 cut(s)	390, 1617, 2066, 2079, 2476, 2539, 2860
SfcI	CTRYAG	2 cut(s)	2283, 2409
SfoI	GGCGCC	2 cut(s)	351, 1027
Sfr303I	CCGCGG	1 cut(s)	134
SfuI	TTCGAA	1 cut(s)	1939
SgrAI	CRCCGGYG	1 cut(s)	601
SgrBI	CCGCGG	1 cut(s)	134
SinI	GGWCC	3 cut(s)	165, 2374, 2404
SmiMI	CAYNNNNRTG	2 cut(s)	1223, 2642
SmlI	CTYRAG	2 cut(s)	1121, 1504
SmoI	CTYRAG	2 cut(s)	1121, 1504
SspDI	GGCGCC	2 cut(s)	349, 1025
SspMI	CTAG	2 cut(s)	162, 2878
StyD4I	CCNGG	8 cut(s)	210, 283, 328, 822, 855, 1069, 1187, 2817
StyI	CCWWGG	2 cut(s)	161, 1005
TaaI	ACNGT	7 cut(s)	310, 833, 864, 1697, 1774, 2387, 2525
TaiI	ACGT	4 cut(s)	24, 376, 570, 1726
TaqI	TCGA	8 cut(s)	312, 362, 384, 390, 580, 852, 1001, 1939
TauI	GCSGC	9 cut(s)	133, 136, 279, 485, 502, 601, 884, 887, 2504
Tru1I	TTAA	6 cut(s)	1505, 1593, 2046, 2339, 2496, 2517
Tru9I	TTAA	6 cut(s)	1505, 1593, 2046, 2339, 2496, 2517
TscAI	CASTG	5 cut(s)	1179, 1533, 1702, 2014, 2602
TseFI	GTSAC	4 cut(s)	322, 1075, 1335, 1664
TseI	GCWGC	6 cut(s)	502, 964, 1126, 2225, 2649, 2834
Tsp45I	GTSAC	4 cut(s)	322, 1075, 1335, 1664
TspGWI	ACGGA	3 cut(s)	669, 2271, 2701
TspRI	CASTG	5 cut(s)	1179, 1533, 1702, 2014, 2602
Vha464I	CTTAAG	1 cut(s)	1504
VpaK11BI	GGWCC	3 cut(s)	165, 2374, 2404
XapI	RAATTY	9 cut(s)	719, 848, 1262, 1625, 1985, 2031, 2173, 2335, 2705
XceI	RCATGY	2 cut(s)	2166, 2647
XmaJI	CCTAGG	1 cut(s)	161
XmiI	GTMKAC	2 cut(s)	416, 1583
XmnI	GAANNNNTTC	1 cut(s)	1854
XspI	CTAG	2 cut(s)	162, 2878
Zsp2I	ATGCAT	2 cut(s)	2168, 2739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.