Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8245775.1

Orthogroup ID

OG0009585

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 754

Gene Structure 754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8245775.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 479 bp

ctggaaccgtttgaagaggcggttgcggcggctcggagtgagccgtccgatgagaacttggtgaagctgttgaggctgacttatggctatgattcgttccgagatgggcagctggaggcaatcaagatggttctggccggagattcgaccatggttgttctgccgacgggtgccggcaagtctttgtgttatcagttgcctgctgtgattttacctggggtgactttggttgttagtccattgattgcattgatgattgaccagctcaagcagcttcctcatatgattcgcggtggtcttctttgtagtagtcagacactggaagaagtttccgggacgattaggctggttcaagaagggggcataaaagtgcttttcgtctccccagagagattcttgaatggagaattcctgtctatattttctgccactcctatatctcttgttgtggtggatgaagctcattgtgtatctgaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

159

Amino Acids

17.13

Weight (kDa)

4.72

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27880 AT1G27880
fragaria_vesca	FvH4_4g24310 FvH4_4g24310
malus_domestica	MD16G1111900.v1.1
prunus_persica	Prupe.1G233100_v2.0.a1
pyrus_communis	pycom13g09790 pycom16g09490
rosa_chinensis	RchiOBHm_Chr4g0431111
rosa_laevigata	RLG00000006924
rosa_multiflora	Rmu_co7983982.1_g000001 Rmu_co8245775.1_g000001 Rmu_sc0040015.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372700
rosa_rugosa	Rorug04G0248100 Rorug04G0248200 Rorug04G0248300
rosa_samantha	Rh4AG304700 Rh4BG311900 Rh4CG328200 Rh4DG308500
rosa_wichuraiana	Rw4G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccII	CGCG	1 cut(s)	291
AciI	CCGC	4 cut(s)	20, 26, 29, 291
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	14, 353, 400
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	5 cut(s)	67, 112, 265, 274, 461
AluI	AGCT	5 cut(s)	67, 112, 265, 274, 461
Alw26I	GTCTC	1 cut(s)	385
AlwNI	CAGNNNCTG	1 cut(s)	319
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	109, 271
ApoI	RAATTY	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	73, 232
BanI	GGYRCC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	121, 283
BccI	CCATC	2 cut(s)	98, 121
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	385
BisI	GCNGC	4 cut(s)	27, 30, 110, 272
BlsI	GCNGC	4 cut(s)	28, 31, 111, 273
Bme1390I	CCNGG	2 cut(s)	216, 334
BmiI	GGNNCC	2 cut(s)	6, 172
BmrFI	CCNGG	2 cut(s)	216, 334
BpiI	GAAGAC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	150, 215
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	150, 215
BseGI	GGATG	1 cut(s)	460
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	2 cut(s)	121, 283
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	170
BsiSI	CCGG	3 cut(s)	138, 174, 333
BslFI	GGGAC	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	385
BsmBI	CGTCTC	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	137
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	4 cut(s)	20, 26, 29, 291
BspANI	GGCC	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	6, 172
BspT107I	GGYRCC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	150, 215
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	175, 201
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	291
BstMAI	GTCTC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 73, 271
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	214, 332
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	121, 283
BstV2I	GAAGAC	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	175, 201
CaiI	CAGNNNCTG	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	173
CviAII	CATG	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	1 cut(s)	154
FaiI	YATR	8 cut(s)	84, 90, 152, 282, 284, 365, 419, 437
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	1 cut(s)	150
FauNDI	CATATG	1 cut(s)	282
Fnu4HI	GCNGC	4 cut(s)	27, 30, 110, 272
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	4 cut(s)	27, 30, 110, 272
GluI	GCNGC	4 cut(s)	27, 30, 110, 272
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	3 cut(s)	138, 174, 333
Hin1II	CATG	1 cut(s)	154
HinfI	GANTC	4 cut(s)	92, 143, 286, 393
HpaII	CCGG	3 cut(s)	138, 174, 333
HphI	GGTGA	2 cut(s)	73, 232
Hpy188I	TCNGA	5 cut(s)	36, 49, 101, 315, 475
Hpy188III	TCNNGA	3 cut(s)	124, 353, 397
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 73, 271
Hsp92II	CATG	1 cut(s)	154
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Lsp1109I	GCAGC	2 cut(s)	121, 283
MaeIII	GTNAC	1 cut(s)	220
MboII	GAAGA	3 cut(s)	26, 290, 335
MluCI	AATT	1 cut(s)	407
MnlI	CCTC	4 cut(s)	10, 66, 109, 288
MroNI	GCCGGC	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	3 cut(s)	138, 174, 333
MspR9I	CCNGG	2 cut(s)	216, 334
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	26, 73, 271
NaeI	GCCGGC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	334
NcoI	CCATGG	1 cut(s)	150
NdeI	CATATG	1 cut(s)	282
NgoMIV	GCCGGC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	2 cut(s)	6, 172
NmuCI	GTSAC	1 cut(s)	220
PdiI	GCCGGC	1 cut(s)	175
PfeI	GAWTC	4 cut(s)	92, 143, 286, 393
PfoI	TCCNGGA	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	28, 31, 111, 273
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	6, 172
PstNI	CAGNNNCTG	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	368
SatI	GCNGC	4 cut(s)	27, 30, 110, 272
ScrFI	CCNGG	2 cut(s)	216, 334
SetI	ASST	6 cut(s)	69, 114, 217, 267, 276, 463
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	407
SsiI	CCGC	4 cut(s)	20, 26, 29, 291
StyD4I	CCNGG	2 cut(s)	214, 332
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	146
TasI	AATT	1 cut(s)	407
TauI	GCSGC	2 cut(s)	29, 32
TfiI	GAWTC	4 cut(s)	92, 143, 286, 393
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	2 cut(s)	109, 271
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	324
XapI	RAATTY	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.