Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009585

Physical Location & Seq

Genomic Coordinates Reverse (-)

55423155 .. 55430103

Gene Structure 6949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2781 bp

ATGGAGTCCGATTCAGACTCAGACGGCTCTCACATCTCGGCCACTCCGCCGCGGCCAAAGCCCACCCTTATCTCCAGACCTAGGTCCTCTCAATCCAACTCAAAAGCCAAAAAGCTCTTCTCCGAACCCCCGGCCCCCGCCAGACCCGACCCGTCTCCTCTTCTCTCCTCCGATTTACCTTTCCAGATACTCCGCCGCTCGCCCGGTCAAACCCTCGCGATCCCGACCGTCGATTCCTTCGTCACTCCCGGCTACTTCTCCAAATCGGCGCCGTCGTTCTCGAAAAACCGACGTGTCAGCATCGATTTCGATCCGGACACATACGACCCGCCGTCTACTTTCTCACCGCCGAATTCAAAGCCTCAGCCGGAGGCTGGTATCTCTGGATCTAACTATTCTGCAGCCGATTGGGTACCGCCGCAGCCGGAGCCCAAAGTTGAAGTTGCTAATAGGTCTGGGGTTTCATCCAAAATTGTGAAGAAAAACGTCAATCTGATTCGAGGTAATGCTCCTTTGCCGCCGGTGAAGCTCAAAGGCGGAGCCGAAGGGAACTTTGTGAAGCTCAACCTGAACGGAAGGAAGCGCAAGTTTCTGAACAAGGGCAGAAGAGGAAGTTTCAGTTCTTCAAGTCGTCGGAAATTTTACCGGAAAGGTAAAAGAAAATTGACAGCGCAAGATGGAAATGAAGGAGATGAAGATGGCTTGGTTACAGAGGCAATTGCAGAGCAACAGATTCGGAGCCAGGAGGACAGTAAAAGGGCCAAGAAATTCGACCTGGAAGCGTTTGAAGAGGCGGTTGCGGCGGCTCGGAGTGAGCCGTCCGATGAGAACTTGGTGAAGCTGTTGAGGCTGACTTATGGCTATGATTCGTTCCGAGATGGGCAGCTGGAGGCAATCAAGATGGTGCTGGCCGGAGATTCGACCATGGTTGTTCTGCCAACGGGTGCCGGCAAGTCTTTGTGTTATCAGTTGTCTGCTGTGATTTTACCTGGGGTGACTTTGGTTGTTAGTCCATTGATTGCATTGATGATTGACCAGCTCAAGCAGCTTCCTCATATGATTCGCGGTGGTCTTCTTTGTAGTAGTCAGACACTGGAAGAAGTTTCCGGGACGATTAGGCTGGTTCAAGAAGGGGGCATAAAAGTGCTTTTCGTTTCCCCAGAGAGATTCTTGAATGGAGAATTCCTGTCTATATTTTCTGCTACTCCTATATCTCTTGTTGTGGTGGATGAAGCTCATTGTGTATCTGAATGGTCACACAATTTCCGGCCATCATATATGAGGCTCAGAGCTTCTATGCTTCGTGCGAAGCTCAATGTGAACTGCATTCTTGCAATGACAGCTACTGCCACAGCCACAACGTTGAGTTCTGTCATGTCAGCTTTAGAGATTCCTCCAAACAATCTCATTCAAAAAGCCAACTTAAGGGATAATTTAAAACTATCAGTGTCATCAAGTGGAAATAGAATGAAAGATCTGCTGAAGTTGATCAAGTCTACTTCCTTTAAGGATGTTCAGAGCATCATTATCTACTGCAAATTTCAGTTTGAAACAGAAATGATAAGCAGATACTTATGTGACAACAATATCAATGCAAAGAGTTACCACAGTGGTATCCCTTCAAAAGATCGTACGCATGTGCAGGAGTTATTTTTTACTAACAAAATTAGAGTGGTTGTTGCAACTGTGGCCTTTGGCATGGGCCTTGACAAGAGGGATATTGGCTCTGTGATTCATTACACCTTACCAGAAAGCTTGGAGGAATATGTTCAGGAAATCGGACGAGCTGGACGGGATGGAAGGTTATCCTATTGCCATCTTTATTTTGATGACAACACATATTACAAACTTCGAAGTCTTATGTATAGTGATGGAGTGGATGAATATGTGGTAAACAAATTCCTCTGCCAAGTATTCACCAGTGATGAGAACTTGAAGGGAAAAATTTATTCTTTGGTTAAAGAAACTGCATCCCGCAAGTTTGATATGAAAGAAGAGGTGATGCTCACAATTCTAACGCAGTTGGAGTTGGGTGAAGTGCAGTATTTGCATTTACTTCCAGAGATAAATGTAACATGCATTTTGAATTTTCATAAGACTTCCCCAGTTTTGCTTGCTGAAAAGGATGTTCTCATTGCAGCAATTCTGAAGAAGTCTGAGACTAAGCACGGACAATGTGTGTTTGACATACCGACTATAGCAAATAGCATTGGAGTTACAACTACCATCCTAACAAACCATTTACAGAATTTAAAGTTGAAAGGAGAAGTAACATATGAAGTGAAGGACCAAGCCTACTGTTATACAATTGTGGAGGTCCCTGCAGATCTTTGTTCTCTATCAGCACAGCTTACAAAATGGCTATCAGAGGTTGAAAGTTGTAAGGTGCGGAAGTTGGATGCAATGTTTAATGCGGCAGTCTCTGCTGTTAATAACTGTGAGAAGATGGAAGGTTGTTCTGATGCCCAGCAAACACTATGTTTGCAAAGGAAGATTTTGGAGTATTTCAGTGAAGATAATGTTGATGTCCCTAATAAGATGGGTAAAAGCAGCCCATTTTTGCAAGCAGATATAAAAGTCTTTCTACGGAGCAATTCACAGGCCAAATTCACCCCCAGAGCTGTTGCAAGGATCATGCATGGCATTCCAAGTCCAGCATATGCTTCTGCATTTTGGTCTAAAACTCACTTCTGGGGAAGATATACGCATATAGACTTCCAGGTGGTAATGGAAGCAGCAAAGGCGGAATTGATCAATTTTGTGAGGAAGGATGCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

926

Amino Acids

102.87

Weight (kDa)

8.94

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	293 - 454	1.8e-21	DEAD/DEAH box helicase
Helicase_C	PF00271	490 - 600	3.3e-19	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27880 AT1G27880
fragaria_vesca	FvH4_4g24310 FvH4_4g24310
malus_domestica	MD16G1111900.v1.1
prunus_persica	Prupe.1G233100_v2.0.a1
pyrus_communis	pycom13g09790 pycom16g09490
rosa_chinensis	RchiOBHm_Chr4g0431111
rosa_laevigata	RLG00000006924
rosa_multiflora	Rmu_co7983982.1_g000001 Rmu_co8245775.1_g000001 Rmu_sc0040015.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372700
rosa_rugosa	Rorug04G0248100 Rorug04G0248200 Rorug04G0248300
rosa_samantha	Rh4AG304700 Rh4BG311900 Rh4CG328200 Rh4DG308500
rosa_wichuraiana	Rw4G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	412
AccB1I	GGYRCC	3 cut(s)	268, 412, 944
AccBSI	CCGCTC	1 cut(s)	198
AccI	GTMKAC	2 cut(s)	335, 1496
AccII	CGCG	3 cut(s)	52, 218, 1065
AccIII	TCCGGA	1 cut(s)	313
AclI	AACGTT	1 cut(s)	1361
AclWI	GGATC	4 cut(s)	214, 305, 394, 2639
AcoI	YGGCCR	4 cut(s)	39, 53, 909, 1268
AcuI	CTGAAG	2 cut(s)	1502, 2168
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	2 cut(s)	414, 1633
AfiI	CCNNNNNNNGG	3 cut(s)	81, 374, 1425
AflII	CTTAAG	1 cut(s)	1423
AflIII	ACRYGT	1 cut(s)	292
AhdI	GACNNNNNGTC	1 cut(s)	331
AjiI	CACGTC	1 cut(s)	293
AjnI	CCWGG	4 cut(s)	741, 774, 988, 2718
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
Alw26I	GTCTC	3 cut(s)	159, 2153, 2425
AlwI	GGATC	4 cut(s)	214, 305, 394, 2639
AlwNI	CAGNNNCTG	3 cut(s)	1093, 1346, 2423
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	9 cut(s)	39, 53, 132, 759, 909, 1268, 1689, 1702, 2601
ApeKI	GCWGC	7 cut(s)	401, 421, 883, 1045, 2138, 2550, 2735
Asp700I	GAANNNNTTC	1 cut(s)	1767
Asp718I	GGTACC	1 cut(s)	412
AspA2I	CCTAGG	1 cut(s)	80
AspLEI	GCGC	3 cut(s)	271, 585, 673
AspS9I	GGNCC	6 cut(s)	84, 133, 759, 1702, 2287, 2317
AsuC2I	CCSGG	4 cut(s)	131, 204, 249, 1108
AsuHPI	GGTGA	8 cut(s)	336, 535, 847, 1006, 1909, 2011, 2045, 2602
AsuII	TTCGAA	1 cut(s)	1852
AvaII	GGWCC	3 cut(s)	84, 2287, 2317
AvrII	CCTAGG	1 cut(s)	80
BaeI	ACNNNNGTAYC	4 cut(s)	1561, 1594, 1597, 1630
BanI	GGYRCC	3 cut(s)	268, 412, 944
BanII	GRGCYC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	1064
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	7 cut(s)	413, 433, 895, 1057, 2150, 2562, 2747
BceAI	ACGGC	4 cut(s)	40, 256, 316, 802
BcgI	CGANNNNNNTGC	4 cut(s)	289, 323, 716, 750
BciT130I	CCWGG	4 cut(s)	743, 776, 990, 2720
BciVI	GTATCC	1 cut(s)	1625
BclI	TGATCA	2 cut(s)	1488, 2751
BcnI	CCSGG	4 cut(s)	131, 204, 249, 1108
BcoDI	GTCTC	3 cut(s)	159, 2153, 2425
BfaI	CTAG	2 cut(s)	81, 2779
BfmI	CTRYAG	3 cut(s)	399, 2196, 2322
BfoI	RGCGCY	1 cut(s)	272
BfrI	CTTAAG	1 cut(s)	1423
BfuI	GTATCC	1 cut(s)	1625
BglII	AGATCT	2 cut(s)	1474, 2326
BlnI	CCTAGG	1 cut(s)	80
Bme1390I	CCNGG	8 cut(s)	131, 204, 249, 743, 776, 990, 1108, 2720
Bme18I	GGWCC	3 cut(s)	84, 2287, 2317
BmeRI	GACNNNNNGTC	1 cut(s)	331
BmgBI	CACGTC	1 cut(s)	293
BmgT120I	GGNCC	6 cut(s)	84, 133, 759, 1702, 2287, 2317
BmiI	GGNNCC	8 cut(s)	135, 270, 414, 429, 541, 740, 946, 2319
BmrFI	CCNGG	8 cut(s)	131, 204, 249, 743, 776, 990, 1108, 2720
BmrI	ACTGGG	1 cut(s)	2099
BmsI	GCATC	7 cut(s)	309, 1530, 1979, 1992, 2389, 2452, 2761
BmuI	ACTGGG	1 cut(s)	2099
BoxI	GACNNNNGTC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	1064
BpmI	CTGGAG	2 cut(s)	58, 908
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	1852
BpuEI	CTTGAG	1 cut(s)	1025
BpuMI	CCSGG	4 cut(s)	131, 204, 249, 1108
Bsa29I	ATCGAT	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	5 cut(s)	50, 80, 129, 924, 989
BsaWI	WCCGGW	2 cut(s)	313, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 374, 1425
Bse118I	RCCGGY	2 cut(s)	520, 947
Bse1I	ACTGG	3 cut(s)	1098, 1920, 2105
Bse3DI	GCAATG	3 cut(s)	1341, 2133, 2409
Bse8I	GATNNNNATC	1 cut(s)	309
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	4 cut(s)	743, 776, 990, 2720
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	5 cut(s)	50, 80, 129, 924, 989
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	3 cut(s)	81, 374, 1425
BseMI	GCAATG	3 cut(s)	1341, 2133, 2409
BseMII	CTCAG	4 cut(s)	33, 377, 1300, 2148
BseNI	ACTGG	3 cut(s)	1098, 1920, 2105
BseRI	GAGGAG	2 cut(s)	147, 157
BseXI	GCAGC	7 cut(s)	413, 433, 895, 1057, 2150, 2562, 2747
BseYI	CCCAGC	1 cut(s)	2466
BsgI	GTGCAG	2 cut(s)	1661, 2060
Bsh1236I	CGCG	3 cut(s)	52, 218, 1065
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	9 cut(s)	41, 55, 134, 761, 911, 1270, 1691, 1704, 2603
BshNI	GGYRCC	3 cut(s)	268, 412, 944
BshVI	ATCGAT	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	228
BsiWI	CGTACG	1 cut(s)	1631
BslFI	GGGAC	3 cut(s)	1123, 2303, 2513
BslI	CCNNNNNNNGG	3 cut(s)	81, 374, 1425
BsmAI	GTCTC	3 cut(s)	159, 2153, 2425
BsmBI	CGTCTC	1 cut(s)	159
BsmFI	GGGAC	3 cut(s)	1123, 2303, 2513
BsmI	GAATGC	2 cut(s)	1326, 2643
BsnI	GGCC	9 cut(s)	41, 55, 134, 761, 911, 1270, 1691, 1704, 2603
Bsp119I	TTCGAA	1 cut(s)	1852
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	9 cut(s)	219, 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
Bsp19I	CCATGG	1 cut(s)	924
Bsp68I	TCGCGA	1 cut(s)	218
BspANI	GGCC	9 cut(s)	41, 55, 134, 761, 911, 1270, 1691, 1704, 2603
BspCNI	CTCAG	4 cut(s)	32, 376, 1299, 2149
BspDI	ATCGAT	1 cut(s)	303
BspEI	TCCGGA	1 cut(s)	313
BspFNI	CGCG	3 cut(s)	52, 218, 1065
BspLI	GGNNCC	8 cut(s)	135, 270, 414, 429, 541, 740, 946, 2319
BspMAI	CTGCAG	2 cut(s)	403, 2326
BspPI	GGATC	4 cut(s)	214, 305, 394, 2639
BspQI	GCTCTTC	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	1852
BspT107I	GGYRCC	3 cut(s)	268, 412, 944
BspTI	CTTAAG	1 cut(s)	1423
BsrBI	CCGCTC	1 cut(s)	198
BsrDI	GCAATG	3 cut(s)	1341, 2133, 2409
BsrFI	RCCGGY	2 cut(s)	520, 947
BsrI	ACTGG	3 cut(s)	1098, 1920, 2105
BssAI	RCCGGY	2 cut(s)	520, 947
BssECI	CCNNGG	5 cut(s)	50, 80, 129, 924, 989
BssMI	GATC	9 cut(s)	219, 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	2 cut(s)	80, 924
Bst2UI	CCWGG	4 cut(s)	743, 776, 990, 2720
Bst4CI	ACNGT	6 cut(s)	229, 752, 1610, 1687, 2300, 2438
Bst6I	CTCTTC	5 cut(s)	122, 165, 601, 783, 1989
BstACI	GRCGYC	1 cut(s)	269
BstAFI	CTTAAG	1 cut(s)	1423
BstAPI	GCANNNNNTGC	2 cut(s)	2047, 2423
BstBI	TTCGAA	1 cut(s)	1852
BstC8I	GCNNGC	5 cut(s)	200, 909, 949, 2115, 2565
BstDEI	CTNAG	5 cut(s)	19, 363, 1286, 2157, 2163
BstDSI	CCRYGG	2 cut(s)	50, 924
BstFNI	CGCG	3 cut(s)	52, 218, 1065
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	3 cut(s)	271, 585, 673
BstKTI	GATC	9 cut(s)	222, 313, 389, 1477, 1491, 1630, 2329, 2634, 2754
BstMAI	GTCTC	3 cut(s)	159, 2153, 2425
BstMBI	GATC	9 cut(s)	219, 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
BstMCI	CGRYCG	1 cut(s)	228
BstNI	CCWGG	4 cut(s)	743, 776, 990, 2720
BstNSI	RCATGY	2 cut(s)	1640, 2079
BstPAI	GACNNNNGTC	1 cut(s)	82
BstSCI	CCNGG	8 cut(s)	129, 202, 247, 741, 774, 988, 1106, 2718
BstSFI	CTRYAG	3 cut(s)	399, 2196, 2322
BstUI	CGCG	3 cut(s)	52, 218, 1065
BstV1I	GCAGC	7 cut(s)	413, 433, 895, 1057, 2150, 2562, 2747
BstV2I	GAAGAC	1 cut(s)	1064
BstX2I	RGATCY	3 cut(s)	386, 1474, 2326
BstYI	RGATCY	3 cut(s)	386, 1474, 2326
Bsu15I	ATCGAT	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	1625
BsuRI	GGCC	9 cut(s)	41, 55, 134, 761, 911, 1270, 1691, 1704, 2603
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	2 cut(s)	50, 924
BtrI	CACGTC	1 cut(s)	293
BtsIMutI	CAGTG	5 cut(s)	1091, 1452, 1615, 1927, 2515
BtuMI	TCGCGA	1 cut(s)	218
Cac8I	GCNNGC	5 cut(s)	200, 909, 949, 2115, 2565
CaiI	CAGNNNCTG	3 cut(s)	1093, 1346, 2423
CfoI	GCGC	3 cut(s)	271, 585, 673
Cfr10I	RCCGGY	2 cut(s)	520, 947
Cfr13I	GGNCC	6 cut(s)	84, 133, 759, 1702, 2287, 2317
Cfr42I	CCGCGG	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	413, 1632
CviAII	CATG	7 cut(s)	925, 1375, 1637, 1699, 2076, 2635, 2639
CviQI	GTAC	2 cut(s)	413, 1632
DdeI	CTNAG	5 cut(s)	19, 363, 1286, 2157, 2163
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	9 cut(s)	221, 312, 388, 1476, 1490, 1629, 2328, 2633, 2753
DpnII	GATC	9 cut(s)	219, 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
DraI	TTTAAA	2 cut(s)	1437, 2253
DriI	GACNNNNNGTC	1 cut(s)	331
EaeI	YGGCCR	4 cut(s)	39, 53, 909, 1268
Eam1104I	CTCTTC	5 cut(s)	122, 165, 601, 783, 1989
Eam1105I	GACNNNNNGTC	1 cut(s)	331
EarI	CTCTTC	5 cut(s)	122, 165, 601, 783, 1989
EciI	GGCGGA	4 cut(s)	36, 182, 552, 2759
Eco130I	CCWWGG	2 cut(s)	80, 924
Eco24I	GRGCYC	1 cut(s)	432
Eco47I	GGWCC	3 cut(s)	84, 2287, 2317
Eco57I	CTGAAG	2 cut(s)	1502, 2168
EcoO109I	RGGNCCY	2 cut(s)	84, 2317
EcoRI	GAATTC	2 cut(s)	352, 1181
EcoRII	CCWGG	4 cut(s)	741, 774, 988, 2718
EcoT14I	CCWWGG	2 cut(s)	80, 924
EcoT22I	ATGCAT	2 cut(s)	2081, 2640
EcoT38I	GRGCYC	1 cut(s)	432
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	2 cut(s)	80, 924
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	7 cut(s)	928, 1378, 1640, 1702, 2079, 2638, 2642
FaqI	GGGAC	3 cut(s)	1123, 2303, 2513
FatI	CATG	7 cut(s)	924, 1374, 1636, 1698, 2075, 2634, 2638
FauI	CCCGC	3 cut(s)	145, 336, 1982
FauNDI	CATATG	3 cut(s)	1056, 2275, 2659
FbaI	TGATCA	2 cut(s)	1488, 2751
FblI	GTMKAC	2 cut(s)	335, 1496
FokI	GGATG	9 cut(s)	451, 1241, 1523, 1808, 1892, 1957, 2138, 2213, 2411
FriOI	GRGCYC	1 cut(s)	432
FspBI	CTAG	2 cut(s)	81, 2779
GlaI	GCGC	3 cut(s)	270, 584, 672
GsaI	CCCAGC	1 cut(s)	2470
GsuI	CTGGAG	2 cut(s)	58, 908
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	9 cut(s)	41, 55, 134, 761, 911, 1270, 1691, 1704, 2603
HhaI	GCGC	3 cut(s)	271, 585, 673
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	7 cut(s)	928, 1378, 1640, 1702, 2079, 2638, 2642
Hin6I	GCGC	3 cut(s)	269, 583, 671
HinP1I	GCGC	3 cut(s)	269, 583, 671
HindIII	AAGCTT	1 cut(s)	1753
HphI	GGTGA	8 cut(s)	336, 535, 847, 1006, 1909, 2011, 2045, 2602
Hpy166II	GTNNAC	4 cut(s)	336, 1321, 1497, 1894
Hpy8I	GTNNAC	4 cut(s)	336, 1321, 1497, 1894
Hpy99I	CGWCG	4 cut(s)	233, 277, 294, 636
HpyCH4III	ACNGT	6 cut(s)	229, 752, 1610, 1687, 2300, 2438
HpyCH4IV	ACGT	3 cut(s)	292, 486, 1361
HpyF3I	CTNAG	5 cut(s)	19, 363, 1286, 2157, 2163
HpySE526I	ACGT	3 cut(s)	292, 486, 1361
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	7 cut(s)	928, 1378, 1640, 1702, 2079, 2638, 2642
HspAI	GCGC	3 cut(s)	269, 583, 671
KasI	GGCGCC	1 cut(s)	268
Kpn2I	TCCGGA	1 cut(s)	313
KpnI	GGTACC	1 cut(s)	416
KroI	GCCGGC	1 cut(s)	947
KroNI	GCCGGC	1 cut(s)	949
Ksp22I	TGATCA	2 cut(s)	1488, 2751
KspI	CCGCGG	1 cut(s)	53
Kzo9I	GATC	9 cut(s)	219, 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	5 cut(s)	427, 514, 539, 738, 2589
Lsp1109I	GCAGC	7 cut(s)	413, 433, 895, 1057, 2150, 2562, 2747
LweI	GCATC	7 cut(s)	309, 1530, 1979, 1992, 2389, 2452, 2761
MaeI	CTAG	2 cut(s)	81, 2779
MaeII	ACGT	3 cut(s)	292, 486, 1361
MaeIII	GTNAC	9 cut(s)	241, 706, 994, 1254, 1577, 1601, 2071, 2215, 2269
MalI	GATC	9 cut(s)	221, 312, 388, 1476, 1490, 1629, 2328, 2633, 2753
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	9 cut(s)	219, 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
MfeI	CAATTG	2 cut(s)	717, 2307
MflI	RGATCY	3 cut(s)	386, 1474, 2326
MhlI	GDGCHC	1 cut(s)	432
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	11, 14
MmeI	TCCRAC	4 cut(s)	120, 614, 2004, 2376
Mph1103I	ATGCAT	2 cut(s)	2081, 2640
MroI	TCCGGA	1 cut(s)	313
MroNI	GCCGGC	1 cut(s)	947
MroXI	GAANNNNTTC	1 cut(s)	1767
MseI	TTAA	7 cut(s)	1424, 1436, 1506, 1959, 2252, 2409, 2430
MslI	CAYNNNNRTG	1 cut(s)	1142
MspA1I	CMGCKG	2 cut(s)	52, 886
MspCI	CTTAAG	1 cut(s)	1423
MspR9I	CCNGG	8 cut(s)	131, 204, 249, 743, 776, 990, 1108, 2720
MunI	CAATTG	2 cut(s)	717, 2307
Mva1269I	GAATGC	2 cut(s)	1326, 2643
MvaI	CCWGG	4 cut(s)	743, 776, 990, 2720
MvnI	CGCG	3 cut(s)	52, 218, 1065
NaeI	GCCGGC	1 cut(s)	949
NarI	GGCGCC	1 cut(s)	269
NciI	CCSGG	4 cut(s)	131, 204, 249, 1108
NcoI	CCATGG	1 cut(s)	924
NdeI	CATATG	3 cut(s)	1056, 2275, 2659
NdeII	GATC	9 cut(s)	219, 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
NgoMIV	GCCGGC	1 cut(s)	947
NlaIII	CATG	7 cut(s)	928, 1378, 1640, 1702, 2079, 2638, 2642
NlaIV	GGNNCC	8 cut(s)	135, 270, 414, 429, 541, 740, 946, 2319
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	4 cut(s)	241, 994, 1254, 1577
NruI	TCGCGA	1 cut(s)	218
NsiI	ATGCAT	2 cut(s)	2081, 2640
NspI	RCATGY	2 cut(s)	1640, 2079
NspV	TTCGAA	1 cut(s)	1852
PciSI	GCTCTTC	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	2 cut(s)	237, 272
PctI	GAATGC	2 cut(s)	1326, 2643
PdiI	GCCGGC	1 cut(s)	949
PdmI	GAANNNNTTC	1 cut(s)	1767
Pfl23II	CGTACG	1 cut(s)	1631
PfoI	TCCNGGA	1 cut(s)	1106
PleI	GAGTC	2 cut(s)	11, 13
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	2 cut(s)	11, 13
PpuMI	RGGWCCY	2 cut(s)	84, 2317
PshAI	GACNNNNGTC	1 cut(s)	82
Psp1406I	AACGTT	1 cut(s)	1361
Psp5II	RGGWCCY	2 cut(s)	84, 2317
Psp6I	CCWGG	4 cut(s)	741, 774, 988, 2718
PspFI	CCCAGC	1 cut(s)	2466
PspGI	CCWGG	4 cut(s)	741, 774, 988, 2718
PspLI	CGTACG	1 cut(s)	1631
PspN4I	GGNNCC	8 cut(s)	135, 270, 414, 429, 541, 740, 946, 2319
PspPI	GGNCC	6 cut(s)	84, 133, 759, 1702, 2287, 2317
PspPPI	RGGWCCY	2 cut(s)	84, 2317
PstI	CTGCAG	2 cut(s)	403, 2326
PstNI	CAGNNNCTG	3 cut(s)	1093, 1346, 2423
PsuI	RGATCY	3 cut(s)	386, 1474, 2326
PvuII	CAGCTG	1 cut(s)	886
RruI	TCGCGA	1 cut(s)	218
RsaI	GTAC	2 cut(s)	414, 1633
RsaNI	GTAC	2 cut(s)	413, 1632
RseI	CAYNNNNRTG	1 cut(s)	1142
SacII	CCGCGG	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	7 cut(s)	1424, 1436, 1506, 1959, 2252, 2409, 2430
Sau3AI	GATC	9 cut(s)	219, 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
Sau96I	GGNCC	6 cut(s)	84, 133, 759, 1702, 2287, 2317
SchI	GAGTC	2 cut(s)	11, 14
ScrFI	CCNGG	8 cut(s)	131, 204, 249, 743, 776, 990, 1108, 2720
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	7 cut(s)	309, 1530, 1979, 1992, 2389, 2452, 2761
SfcI	CTRYAG	3 cut(s)	399, 2196, 2322
SfoI	GGCGCC	1 cut(s)	270
Sfr303I	CCGCGG	1 cut(s)	53
SfuI	TTCGAA	1 cut(s)	1852
SgrAI	CRCCGGYG	1 cut(s)	520
SgrBI	CCGCGG	1 cut(s)	53
SinI	GGWCC	3 cut(s)	84, 2287, 2317
SmiMI	CAYNNNNRTG	1 cut(s)	1142
SmlI	CTYRAG	2 cut(s)	1040, 1423
SmoI	CTYRAG	2 cut(s)	1040, 1423
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	2 cut(s)	81, 2779
StyD4I	CCNGG	8 cut(s)	129, 202, 247, 741, 774, 988, 1106, 2718
StyI	CCWWGG	2 cut(s)	80, 924
TaaI	ACNGT	6 cut(s)	229, 752, 1610, 1687, 2300, 2438
TaiI	ACGT	3 cut(s)	295, 489, 1364
TaqI	TCGA	8 cut(s)	231, 281, 303, 309, 499, 771, 920, 1852
TauI	GCSGC	8 cut(s)	52, 55, 198, 421, 520, 803, 806, 2417
Tru1I	TTAA	7 cut(s)	1424, 1436, 1506, 1959, 2252, 2409, 2430
Tru9I	TTAA	7 cut(s)	1424, 1436, 1506, 1959, 2252, 2409, 2430
TscAI	CASTG	5 cut(s)	1098, 1452, 1615, 1927, 2515
TseFI	GTSAC	4 cut(s)	241, 994, 1254, 1577
TseI	GCWGC	7 cut(s)	401, 421, 883, 1045, 2138, 2550, 2735
Tsp45I	GTSAC	4 cut(s)	241, 994, 1254, 1577
TspGWI	ACGGA	3 cut(s)	588, 2184, 2602
TspRI	CASTG	5 cut(s)	1098, 1452, 1615, 1927, 2515
Vha464I	CTTAAG	1 cut(s)	1423
VpaK11BI	GGWCC	3 cut(s)	84, 2287, 2317
XceI	RCATGY	2 cut(s)	1640, 2079
XmaJI	CCTAGG	1 cut(s)	80
XmiI	GTMKAC	2 cut(s)	335, 1496
XmnI	GAANNNNTTC	1 cut(s)	1767
XspI	CTAG	2 cut(s)	81, 2779
Zsp2I	ATGCAT	2 cut(s)	2081, 2640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.