Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009585

Physical Location & Seq

Genomic Coordinates Forward (+)

11914892 .. 11921431

Gene Structure 6540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006924

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2784 bp

ATGGAGTCCGATTCAGACTCAGACGGCTCTCACATCTCGGCCACTCCGCCGCGGCCAAAGCCCGCCCTTATCTCCAGACCTAGGTCCTCTCAATCCGACTCAAAAGCCAAAAAGCTCTTCTCCGAACCCCCGGCCCCCGCCAGACCCGACCCGTCTCTTCTCTCCTCCGATTTACCTTTCCAGATACTCCGCCGCCCGCCCGGTCAAACCCTAGCTATCCCGACCGTCGATTCCTTTGTCACTCCCGGCTACTTCTCCAAATCGGCGCCGTCGTTTTCAAAAAACCGACGTGTCAGCATCGATTTCGATCCGGACACATACGACCTTCCGTCTACTTTCTCACCGCCGAATCCAAAGCCTCAGCCGGAGGCTGGTATCTCTGGATCTAACTATTCTGCCGCCAATTGGGTACCGCCGCAGCCGCAGCCGGAGCCCAAAGTTGAAGTTGCTAATAGGTCTGGGGTTTCATCCAAAATTGTGAAGAAAAACGTCAATCTGATTCGAGGTAATGCTCCTTTGCCGCCGGTGAAGCTCAAAGGCGGAGCCGAAGGGAACTTTGTGAAGCTCAACCTGAACGGAAGGAAGCGCAAGTTTCTGAACAAGGGCAGAAGAGGAAGTACCAGTTCTTCAAGTCGTCGGAAATTTTACCGGAAAGGTAAAAGAAAATTGATAGCGCAAGATGGAAATGAAGGAGATGAAGATTGCTTGGTTACAGAGGCAATTGCAGAGCAACAGAATCGGAGCCAGGAGGACAGTAAAAGAGCCAAGAAATTTGACCTGGGAGCGTTTGAAGAGGCGGTTGCGACGGCTCGGAGTGAGCCGTCGGATGAGAACTTGGTGAAGCTGTTGAGGCTGACTTATGGCTATGATTCGTTCCGAGATGGGCAGCTGGAGGCAATCAAGATGGTGCTGGCCGGAGATTCGACCATGGTTGTTCTGCCGACTGGCGCCGGCAAGTCTTTGTGTTATCAGTTGCCTGCTGTGATTTTCCCTGGGGTGACTTTGGTTGTTAGTCCATTGATTGCATTGATGATTGACCAGCTCAAGCAGCTTCCTCATATGATTCGCGGTGGTCTTCTTTGTAGTAGTCAGACTCTGGAAGAAGTTTCCGGGACGATTAGGCTGGTTCAAGAAGGGGGCATAAAAGTGCTTTTCGTATCGCCAGAGAGATTCTTGAATGGAGAATTCCTGTCTATATTTTCTGCCACCCCTATATCTCTTGTTGTGGTGGATGAAGCTCATTGTGTTTCTGAATGGTCACACAATTTTCGGCCATCATACATGAGGCTCAGAGCTTCTATGCTTCGTGCGAAGCTCAATGTGAACTGCATTCTTGCAATGACAGCTACTGCCACAGCCACAACTTTGAGTTCTGTCATGTCAGCTTTAGAGATTCCTCCAAACAATCTCATTCAAAAAGCCAACCTAAGGGATAATTTACAACTATCAGTGTCATCAAGTGGAAATAGAATGAAAGATCTGCTGAAGTTGATCAAGTCTACTTCCTTTAAGGATGTTCAGAGCATCATTATCTACTGCAAATTTCAGTTTGAAACAGAAATGATAAGCAGATACTTATGTGACAACAATATCAATGCAAAGATTTATCACAGTGGTATCCCTTCAAAAGATCGTACACGTGTGCAGGAGTTATTTTTTACTAACAAAATTAGAGTGGTTGTTGCGACTGTGGCCTTTGGCATGGGCCTTGACAAGAGGGATATTGGCTCTGTGATTCATTACACCTTACCAGAAAGCTTGGAGGAATATGTTCAGGAAATCGGACGAGCTGGACGGGATGGAAGGTCATCCTATTGCCATCTTTATTTTGATGACAACACATATTACAAACTTCGAAGTCTTATGTATAGTGATGGAGTGGATGAATATGTGGTAAACAAATTCCTCTGCCAAGTATTCACCAGTGATGAGAACTTGAAGGGAAAAATTTATTCGTTGGTTAAAGAAACTGCATCCCGCAAGTTTGATATGAAAGAAGAGGTGATGCTCACAATTCTAACGCAGTTGGAGTTGGGTGAAGTGCAGTATTTGCATTTACTTCCAGAGATAAATGTAACATGCATTTTGAATTTTCATAAGACTTCCCCAGTTTTGCTTGCTGAAAAGGATGTTCTTATTGCAGCAATTCTGAAGAAGTCTGAGACTAAGCACGGACAATGTGTGTTTGACATACCGACTATAGCAAATAGCATTGGAGTTACAACTACCATCCTAACAAACCATTTACAGAATTTAAAGTTGAAAGGAGAAGTAACATATGAAGTGAAGGACCAAGCCTACTGTTATACAATTGTGGAGGTCCCTGCAGATCTTTGTTCTCTATCAGCACAGCTTACAAAATGGCTATCAGAGGTTGAAAGTTGTAAGGTGCGGAAGTTGGATGCAATGTTTAATGCGGCAGTCTCTGCTGTTAATAACTGTGAGAAGATGGAAGGTTGTTCTGATGCCCAGCAAACACTATGTTTGCAAAGGAAGATTTTGGAGTATTTCAGTGAAGATAATGTTGATGTCCCTAATAAGATGGGTAAAAGCAGCCCATTTTTGCAAGCAGATATAAAAGTCTTTCTACGGAGCAATTCACAGGCCAAATTCATCCCCAGAGCTGTTGCAAGGATCATGCATGGCATTCCAAGTCCAGCATATGCTTCTGCATTTTGGTCTAAAACTCACTTCTGGGGAAGATATACTCATATAGACTTCCAGGCGGTAATGGAAGCAGCAAAGGCGGAATTGATCAATTTTGTGAGGAAGGATGCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

928

Amino Acids

103.03

Weight (kDa)

8.96

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	294 - 455	2.8e-22	DEAD/DEAH box helicase
Helicase_C	PF00271	491 - 601	3.5e-19	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27880 AT1G27880
fragaria_vesca	FvH4_4g24310 FvH4_4g24310
malus_domestica	MD16G1111900.v1.1
prunus_persica	Prupe.1G233100_v2.0.a1
pyrus_communis	pycom13g09790 pycom16g09490
rosa_chinensis	RchiOBHm_Chr4g0431111
rosa_laevigata	RLG00000006924
rosa_multiflora	Rmu_co7983982.1_g000001 Rmu_co8245775.1_g000001 Rmu_sc0040015.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372700
rosa_rugosa	Rorug04G0248100 Rorug04G0248200 Rorug04G0248300
rosa_samantha	Rh4AG304700 Rh4BG311900 Rh4CG328200 Rh4DG308500
rosa_wichuraiana	Rw4G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	409
AccB1I	GGYRCC	3 cut(s)	265, 409, 947
AccI	GTMKAC	2 cut(s)	332, 1499
AccII	CGCG	2 cut(s)	52, 1068
AccIII	TCCGGA	1 cut(s)	310
AclWI	GGATC	3 cut(s)	302, 391, 2642
AcoI	YGGCCR	4 cut(s)	39, 53, 912, 1271
AcsI	RAATTY	9 cut(s)	641, 770, 1184, 1541, 1901, 1947, 2089, 2251, 2609
AcuI	CTGAAG	2 cut(s)	1505, 2171
AcvI	CACGTG	1 cut(s)	1640
AcyI	GRCGYC	2 cut(s)	266, 948
AfaI	GTAC	3 cut(s)	411, 619, 1636
AfiI	CCNNNNNNNGG	4 cut(s)	81, 371, 405, 1428
AflIII	ACRYGT	3 cut(s)	289, 1637, 1639
AhdI	GACNNNNNGTC	1 cut(s)	328
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	4 cut(s)	744, 777, 991, 2721
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
Alw26I	GTCTC	3 cut(s)	159, 2156, 2428
AlwI	GGATC	3 cut(s)	302, 391, 2642
AlwNI	CAGNNNCTG	3 cut(s)	1096, 1349, 2426
Aor13HI	TCCGGA	1 cut(s)	310
AoxI	GGCC	8 cut(s)	39, 53, 132, 912, 1271, 1692, 1705, 2604
ApeKI	GCWGC	7 cut(s)	418, 424, 886, 1048, 2141, 2553, 2738
ApoI	RAATTY	9 cut(s)	641, 770, 1184, 1541, 1901, 1947, 2089, 2251, 2609
Asp700I	GAANNNNTTC	1 cut(s)	1770
Asp718I	GGTACC	1 cut(s)	409
AspA2I	CCTAGG	1 cut(s)	80
AspLEI	GCGC	4 cut(s)	268, 588, 676, 950
AspS9I	GGNCC	5 cut(s)	84, 133, 1705, 2290, 2320
AsuC2I	CCSGG	4 cut(s)	131, 201, 246, 1111
AsuHPI	GGTGA	7 cut(s)	333, 538, 850, 1009, 1912, 2014, 2048
AsuII	TTCGAA	1 cut(s)	1855
AvaII	GGWCC	3 cut(s)	84, 2290, 2320
AvrII	CCTAGG	1 cut(s)	80
AxyI	CCTNAGG	1 cut(s)	1427
BaeI	ACNNNNGTAYC	4 cut(s)	1564, 1597, 1600, 1633
BanI	GGYRCC	3 cut(s)	265, 409, 947
BanII	GRGCYC	1 cut(s)	435
BarI	GAAGNNNNNNTAC	4 cut(s)	601, 610, 633, 642
BbrPI	CACGTG	1 cut(s)	1640
BbsI	GAAGAC	1 cut(s)	1067
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	7 cut(s)	430, 436, 898, 1060, 2153, 2565, 2750
BceAI	ACGGC	4 cut(s)	40, 253, 805, 822
BcgI	CGANNNNNNTGC	4 cut(s)	286, 320, 719, 753
BciT130I	CCWGG	4 cut(s)	746, 779, 993, 2723
BciVI	GTATCC	1 cut(s)	1628
BclI	TGATCA	2 cut(s)	1491, 2754
BcnI	CCSGG	4 cut(s)	131, 201, 246, 1111
BcoDI	GTCTC	3 cut(s)	159, 2156, 2428
BfaI	CTAG	3 cut(s)	81, 212, 2782
BfmI	CTRYAG	2 cut(s)	2199, 2325
BfoI	RGCGCY	2 cut(s)	269, 951
BfuI	GTATCC	1 cut(s)	1628
BglII	AGATCT	2 cut(s)	1477, 2329
BlnI	CCTAGG	1 cut(s)	80
Bme1390I	CCNGG	8 cut(s)	131, 201, 246, 746, 779, 993, 1111, 2723
Bme18I	GGWCC	3 cut(s)	84, 2290, 2320
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	5 cut(s)	84, 133, 1705, 2290, 2320
BmiI	GGNNCC	8 cut(s)	135, 267, 411, 432, 544, 743, 949, 2322
BmrFI	CCNGG	8 cut(s)	131, 201, 246, 746, 779, 993, 1111, 2723
BmrI	ACTGGG	1 cut(s)	2102
BmsI	GCATC	7 cut(s)	306, 1533, 1982, 1995, 2392, 2455, 2764
BmuI	ACTGGG	1 cut(s)	2102
BoxI	GACNNNNGTC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	1067
BpmI	CTGGAG	2 cut(s)	58, 911
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu14I	TTCGAA	1 cut(s)	1855
BpuEI	CTTGAG	1 cut(s)	1028
BpuMI	CCSGG	4 cut(s)	131, 201, 246, 1111
Bsa29I	ATCGAT	1 cut(s)	300
BsaAI	YACGTR	1 cut(s)	1640
BsaBI	GATNNNNATC	1 cut(s)	306
BsaHI	GRCGYC	2 cut(s)	266, 948
BsaJI	CCNNGG	7 cut(s)	50, 80, 129, 778, 927, 991, 992
BsaWI	WCCGGW	2 cut(s)	310, 648
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 371, 405, 1428
Bse118I	RCCGGY	2 cut(s)	523, 950
Bse1I	ACTGG	4 cut(s)	621, 949, 1923, 2108
Bse21I	CCTNAGG	1 cut(s)	1427
Bse3DI	GCAATG	2 cut(s)	1344, 2412
Bse8I	GATNNNNATC	1 cut(s)	306
BseAI	TCCGGA	1 cut(s)	310
BseBI	CCWGG	4 cut(s)	746, 779, 993, 2723
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	7 cut(s)	50, 80, 129, 778, 927, 991, 992
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	4 cut(s)	81, 371, 405, 1428
BseMI	GCAATG	2 cut(s)	1344, 2412
BseMII	CTCAG	4 cut(s)	33, 374, 1303, 2151
BseNI	ACTGG	4 cut(s)	621, 949, 1923, 2108
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	7 cut(s)	430, 436, 898, 1060, 2153, 2565, 2750
BseYI	CCCAGC	1 cut(s)	2469
BsgI	GTGCAG	2 cut(s)	1664, 2063
Bsh1236I	CGCG	2 cut(s)	52, 1068
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	8 cut(s)	41, 55, 134, 914, 1273, 1694, 1707, 2606
BshNI	GGYRCC	3 cut(s)	265, 409, 947
BshVI	ATCGAT	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	225
BslFI	GGGAC	3 cut(s)	1126, 2306, 2516
BslI	CCNNNNNNNGG	4 cut(s)	81, 371, 405, 1428
BsmAI	GTCTC	3 cut(s)	159, 2156, 2428
BsmBI	CGTCTC	1 cut(s)	159
BsmFI	GGGAC	3 cut(s)	1126, 2306, 2516
BsmI	GAATGC	2 cut(s)	1329, 2646
BsnI	GGCC	8 cut(s)	41, 55, 134, 914, 1273, 1694, 1707, 2606
Bsp119I	TTCGAA	1 cut(s)	1855
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp13I	TCCGGA	1 cut(s)	310
Bsp143I	GATC	8 cut(s)	307, 383, 1477, 1491, 1630, 2329, 2634, 2754
Bsp19I	CCATGG	1 cut(s)	927
BspANI	GGCC	8 cut(s)	41, 55, 134, 914, 1273, 1694, 1707, 2606
BspCNI	CTCAG	4 cut(s)	32, 373, 1302, 2152
BspDI	ATCGAT	1 cut(s)	300
BspEI	TCCGGA	1 cut(s)	310
BspFNI	CGCG	2 cut(s)	52, 1068
BspLI	GGNNCC	8 cut(s)	135, 267, 411, 432, 544, 743, 949, 2322
BspMAI	CTGCAG	1 cut(s)	2329
BspPI	GGATC	3 cut(s)	302, 391, 2642
BspQI	GCTCTTC	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	1855
BspT107I	GGYRCC	3 cut(s)	265, 409, 947
BsrDI	GCAATG	2 cut(s)	1344, 2412
BsrFI	RCCGGY	2 cut(s)	523, 950
BsrI	ACTGG	4 cut(s)	621, 949, 1923, 2108
BssAI	RCCGGY	2 cut(s)	523, 950
BssECI	CCNNGG	7 cut(s)	50, 80, 129, 778, 927, 991, 992
BssMI	GATC	8 cut(s)	307, 383, 1477, 1491, 1630, 2329, 2634, 2754
BssNI	GRCGYC	2 cut(s)	266, 948
BssT1I	CCWWGG	2 cut(s)	80, 927
Bst2UI	CCWGG	4 cut(s)	746, 779, 993, 2723
Bst4CI	ACNGT	6 cut(s)	226, 755, 1613, 1690, 2303, 2441
Bst6I	CTCTTC	5 cut(s)	122, 162, 604, 786, 1992
BstACI	GRCGYC	2 cut(s)	266, 948
BstAPI	GCANNNNNTGC	2 cut(s)	2050, 2426
BstBAI	YACGTR	1 cut(s)	1640
BstBI	TTCGAA	1 cut(s)	1855
BstC8I	GCNNGC	7 cut(s)	63, 197, 912, 952, 978, 2118, 2568
BstDEI	CTNAG	6 cut(s)	19, 360, 1289, 1427, 2160, 2166
BstDSI	CCRYGG	2 cut(s)	50, 927
BstFNI	CGCG	2 cut(s)	52, 1068
BstH2I	RGCGCY	2 cut(s)	269, 951
BstHHI	GCGC	4 cut(s)	268, 588, 676, 950
BstKTI	GATC	8 cut(s)	310, 386, 1480, 1494, 1633, 2332, 2637, 2757
BstMAI	GTCTC	3 cut(s)	159, 2156, 2428
BstMBI	GATC	8 cut(s)	307, 383, 1477, 1491, 1630, 2329, 2634, 2754
BstMCI	CGRYCG	1 cut(s)	225
BstNI	CCWGG	4 cut(s)	746, 779, 993, 2723
BstNSI	RCATGY	1 cut(s)	2082
BstPAI	GACNNNNGTC	1 cut(s)	82
BstSCI	CCNGG	8 cut(s)	129, 199, 244, 744, 777, 991, 1109, 2721
BstSFI	CTRYAG	2 cut(s)	2199, 2325
BstUI	CGCG	2 cut(s)	52, 1068
BstV1I	GCAGC	7 cut(s)	430, 436, 898, 1060, 2153, 2565, 2750
BstV2I	GAAGAC	1 cut(s)	1067
BstX2I	RGATCY	3 cut(s)	383, 1477, 2329
BstYI	RGATCY	3 cut(s)	383, 1477, 2329
Bsu15I	ATCGAT	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	1427
BsuI	GTATCC	1 cut(s)	1628
BsuRI	GGCC	8 cut(s)	41, 55, 134, 914, 1273, 1694, 1707, 2606
BsuTUI	ATCGAT	1 cut(s)	300
BtgI	CCRYGG	2 cut(s)	50, 927
BtrI	CACGTC	1 cut(s)	290
BtsIMutI	CAGTG	4 cut(s)	1455, 1618, 1930, 2518
Cac8I	GCNNGC	7 cut(s)	63, 197, 912, 952, 978, 2118, 2568
CaiI	CAGNNNCTG	3 cut(s)	1096, 1349, 2426
CfoI	GCGC	4 cut(s)	268, 588, 676, 950
Cfr10I	RCCGGY	2 cut(s)	523, 950
Cfr13I	GGNCC	5 cut(s)	84, 133, 1705, 2290, 2320
Cfr42I	CCGCGG	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	3 cut(s)	410, 618, 1635
CviAII	CATG	7 cut(s)	928, 1282, 1378, 1702, 2079, 2638, 2642
CviQI	GTAC	3 cut(s)	410, 618, 1635
DdeI	CTNAG	6 cut(s)	19, 360, 1289, 1427, 2160, 2166
DinI	GGCGCC	2 cut(s)	267, 949
DpnI	GATC	8 cut(s)	309, 385, 1479, 1493, 1632, 2331, 2636, 2756
DpnII	GATC	8 cut(s)	307, 383, 1477, 1491, 1630, 2329, 2634, 2754
DraI	TTTAAA	1 cut(s)	2256
DriI	GACNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	4 cut(s)	39, 53, 912, 1271
Eam1104I	CTCTTC	5 cut(s)	122, 162, 604, 786, 1992
Eam1105I	GACNNNNNGTC	1 cut(s)	328
EarI	CTCTTC	5 cut(s)	122, 162, 604, 786, 1992
EciI	GGCGGA	4 cut(s)	36, 179, 555, 2762
Eco130I	CCWWGG	2 cut(s)	80, 927
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	3 cut(s)	84, 2290, 2320
Eco57I	CTGAAG	2 cut(s)	1505, 2171
Eco72I	CACGTG	1 cut(s)	1640
Eco81I	CCTNAGG	1 cut(s)	1427
EcoO109I	RGGNCCY	2 cut(s)	84, 2320
EcoRI	GAATTC	1 cut(s)	1184
EcoRII	CCWGG	4 cut(s)	744, 777, 991, 2721
EcoT14I	CCWWGG	2 cut(s)	80, 927
EcoT22I	ATGCAT	2 cut(s)	2084, 2643
EcoT38I	GRGCYC	1 cut(s)	435
EgeI	GGCGCC	2 cut(s)	267, 949
EheI	GGCGCC	2 cut(s)	267, 949
ErhI	CCWWGG	2 cut(s)	80, 927
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	7 cut(s)	931, 1285, 1381, 1705, 2082, 2641, 2645
FaqI	GGGAC	3 cut(s)	1126, 2306, 2516
FatI	CATG	7 cut(s)	927, 1281, 1377, 1701, 2078, 2637, 2641
FauI	CCCGC	4 cut(s)	70, 145, 204, 1985
FauNDI	CATATG	3 cut(s)	1059, 2278, 2662
FbaI	TGATCA	2 cut(s)	1491, 2754
FblI	GTMKAC	2 cut(s)	332, 1499
FriOI	GRGCYC	1 cut(s)	435
FspBI	CTAG	3 cut(s)	81, 212, 2782
GlaI	GCGC	4 cut(s)	267, 587, 675, 949
GsaI	CCCAGC	1 cut(s)	2473
GsuI	CTGGAG	2 cut(s)	58, 911
HaeII	RGCGCY	2 cut(s)	269, 951
HaeIII	GGCC	8 cut(s)	41, 55, 134, 914, 1273, 1694, 1707, 2606
HhaI	GCGC	4 cut(s)	268, 588, 676, 950
Hin1I	GRCGYC	2 cut(s)	266, 948
Hin1II	CATG	7 cut(s)	931, 1285, 1381, 1705, 2082, 2641, 2645
Hin6I	GCGC	4 cut(s)	266, 586, 674, 948
HinP1I	GCGC	4 cut(s)	266, 586, 674, 948
HindIII	AAGCTT	1 cut(s)	1756
HphI	GGTGA	7 cut(s)	333, 538, 850, 1009, 1912, 2014, 2048
Hpy166II	GTNNAC	5 cut(s)	333, 1324, 1500, 1637, 1897
Hpy8I	GTNNAC	5 cut(s)	333, 1324, 1500, 1637, 1897
Hpy99I	CGWCG	6 cut(s)	230, 274, 291, 639, 808, 826
HpyCH4III	ACNGT	6 cut(s)	226, 755, 1613, 1690, 2303, 2441
HpyCH4IV	ACGT	3 cut(s)	289, 489, 1639
HpyF3I	CTNAG	6 cut(s)	19, 360, 1289, 1427, 2160, 2166
HpySE526I	ACGT	3 cut(s)	289, 489, 1639
Hsp92I	GRCGYC	2 cut(s)	266, 948
Hsp92II	CATG	7 cut(s)	931, 1285, 1381, 1705, 2082, 2641, 2645
HspAI	GCGC	4 cut(s)	266, 586, 674, 948
KasI	GGCGCC	2 cut(s)	265, 947
Kpn2I	TCCGGA	1 cut(s)	310
KpnI	GGTACC	1 cut(s)	413
KroI	GCCGGC	1 cut(s)	950
KroNI	GCCGGC	1 cut(s)	952
Ksp22I	TGATCA	2 cut(s)	1491, 2754
KspI	CCGCGG	1 cut(s)	53
Kzo9I	GATC	8 cut(s)	307, 383, 1477, 1491, 1630, 2329, 2634, 2754
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	6 cut(s)	430, 517, 542, 741, 782, 2592
Lsp1109I	GCAGC	7 cut(s)	430, 436, 898, 1060, 2153, 2565, 2750
LweI	GCATC	7 cut(s)	306, 1533, 1982, 1995, 2392, 2455, 2764
MaeI	CTAG	3 cut(s)	81, 212, 2782
MaeII	ACGT	3 cut(s)	289, 489, 1639
MaeIII	GTNAC	8 cut(s)	238, 709, 997, 1257, 1580, 2074, 2218, 2272
MalI	GATC	8 cut(s)	309, 385, 1479, 1493, 1632, 2331, 2636, 2756
MboI	GATC	8 cut(s)	307, 383, 1477, 1491, 1630, 2329, 2634, 2754
MfeI	CAATTG	3 cut(s)	403, 720, 2310
MflI	RGATCY	3 cut(s)	383, 1477, 2329
MhlI	GDGCHC	1 cut(s)	435
Mly113I	GGCGCC	2 cut(s)	266, 948
MlyI	GAGTC	4 cut(s)	11, 14, 92, 1087
MmeI	TCCRAC	5 cut(s)	120, 617, 804, 2007, 2379
Mph1103I	ATGCAT	2 cut(s)	2084, 2643
MroI	TCCGGA	1 cut(s)	310
MroNI	GCCGGC	1 cut(s)	950
MroXI	GAANNNNTTC	1 cut(s)	1770
MseI	TTAA	5 cut(s)	1509, 1962, 2255, 2412, 2433
MslI	CAYNNNNRTG	1 cut(s)	1145
MspA1I	CMGCKG	2 cut(s)	52, 889
MspR9I	CCNGG	8 cut(s)	131, 201, 246, 746, 779, 993, 1111, 2723
MunI	CAATTG	3 cut(s)	403, 720, 2310
Mva1269I	GAATGC	2 cut(s)	1329, 2646
MvaI	CCWGG	4 cut(s)	746, 779, 993, 2723
MvnI	CGCG	2 cut(s)	52, 1068
NaeI	GCCGGC	1 cut(s)	952
NarI	GGCGCC	2 cut(s)	266, 948
NciI	CCSGG	4 cut(s)	131, 201, 246, 1111
NcoI	CCATGG	1 cut(s)	927
NdeI	CATATG	3 cut(s)	1059, 2278, 2662
NdeII	GATC	8 cut(s)	307, 383, 1477, 1491, 1630, 2329, 2634, 2754
NgoMIV	GCCGGC	1 cut(s)	950
NlaIII	CATG	7 cut(s)	931, 1285, 1381, 1705, 2082, 2641, 2645
NlaIV	GGNNCC	8 cut(s)	135, 267, 411, 432, 544, 743, 949, 2322
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	4 cut(s)	238, 997, 1257, 1580
NsiI	ATGCAT	2 cut(s)	2084, 2643
NspI	RCATGY	1 cut(s)	2082
NspV	TTCGAA	1 cut(s)	1855
PasI	CCCWGGG	1 cut(s)	992
PciSI	GCTCTTC	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PctI	GAATGC	2 cut(s)	1329, 2646
PdiI	GCCGGC	1 cut(s)	952
PdmI	GAANNNNTTC	1 cut(s)	1770
PfoI	TCCNGGA	1 cut(s)	1109
PleI	GAGTC	4 cut(s)	11, 13, 92, 1087
PluTI	GGCGCC	2 cut(s)	269, 951
PmaCI	CACGTG	1 cut(s)	1640
PmlI	CACGTG	1 cut(s)	1640
PpsI	GAGTC	4 cut(s)	11, 13, 92, 1087
Ppu21I	YACGTR	1 cut(s)	1640
PpuMI	RGGWCCY	2 cut(s)	84, 2320
PshAI	GACNNNNGTC	1 cut(s)	82
Psp5II	RGGWCCY	2 cut(s)	84, 2320
Psp6I	CCWGG	4 cut(s)	744, 777, 991, 2721
PspCI	CACGTG	1 cut(s)	1640
PspFI	CCCAGC	1 cut(s)	2469
PspGI	CCWGG	4 cut(s)	744, 777, 991, 2721
PspN4I	GGNNCC	8 cut(s)	135, 267, 411, 432, 544, 743, 949, 2322
PspPI	GGNCC	5 cut(s)	84, 133, 1705, 2290, 2320
PspPPI	RGGWCCY	2 cut(s)	84, 2320
PstI	CTGCAG	1 cut(s)	2329
PstNI	CAGNNNCTG	3 cut(s)	1096, 1349, 2426
PsuI	RGATCY	3 cut(s)	383, 1477, 2329
PvuII	CAGCTG	1 cut(s)	889
RsaI	GTAC	3 cut(s)	411, 619, 1636
RsaNI	GTAC	3 cut(s)	410, 618, 1635
RseI	CAYNNNNRTG	1 cut(s)	1145
SacII	CCGCGG	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	5 cut(s)	1509, 1962, 2255, 2412, 2433
Sau3AI	GATC	8 cut(s)	307, 383, 1477, 1491, 1630, 2329, 2634, 2754
Sau96I	GGNCC	5 cut(s)	84, 133, 1705, 2290, 2320
SchI	GAGTC	4 cut(s)	11, 14, 92, 1087
ScrFI	CCNGG	8 cut(s)	131, 201, 246, 746, 779, 993, 1111, 2723
SduI	GDGCHC	1 cut(s)	435
SfaNI	GCATC	7 cut(s)	306, 1533, 1982, 1995, 2392, 2455, 2764
SfcI	CTRYAG	2 cut(s)	2199, 2325
SfoI	GGCGCC	2 cut(s)	267, 949
Sfr303I	CCGCGG	1 cut(s)	53
SfuI	TTCGAA	1 cut(s)	1855
SgrAI	CRCCGGYG	1 cut(s)	523
SgrBI	CCGCGG	1 cut(s)	53
SinI	GGWCC	3 cut(s)	84, 2290, 2320
SmiMI	CAYNNNNRTG	1 cut(s)	1145
SmlI	CTYRAG	1 cut(s)	1043
SmoI	CTYRAG	1 cut(s)	1043
SspDI	GGCGCC	2 cut(s)	265, 947
SspMI	CTAG	3 cut(s)	81, 212, 2782
StyD4I	CCNGG	8 cut(s)	129, 199, 244, 744, 777, 991, 1109, 2721
StyI	CCWWGG	2 cut(s)	80, 927
TaaI	ACNGT	6 cut(s)	226, 755, 1613, 1690, 2303, 2441
TaiI	ACGT	3 cut(s)	292, 492, 1642
TaqI	TCGA	6 cut(s)	228, 300, 306, 502, 923, 1855
TauI	GCSGC	8 cut(s)	52, 55, 195, 401, 418, 424, 523, 2420
Tru1I	TTAA	5 cut(s)	1509, 1962, 2255, 2412, 2433
Tru9I	TTAA	5 cut(s)	1509, 1962, 2255, 2412, 2433
TscAI	CASTG	4 cut(s)	1455, 1618, 1930, 2518
TseFI	GTSAC	4 cut(s)	238, 997, 1257, 1580
TseI	GCWGC	7 cut(s)	418, 424, 886, 1048, 2141, 2553, 2738
Tsp45I	GTSAC	4 cut(s)	238, 997, 1257, 1580
TspGWI	ACGGA	4 cut(s)	318, 591, 2187, 2605
TspRI	CASTG	4 cut(s)	1455, 1618, 1930, 2518
VpaK11BI	GGWCC	3 cut(s)	84, 2290, 2320
XapI	RAATTY	9 cut(s)	641, 770, 1184, 1541, 1901, 1947, 2089, 2251, 2609
XceI	RCATGY	1 cut(s)	2082
XmaJI	CCTAGG	1 cut(s)	80
XmiI	GTMKAC	2 cut(s)	332, 1499
XmnI	GAANNNNTTC	1 cut(s)	1770
XspI	CTAG	3 cut(s)	81, 212, 2782
Zsp2I	ATGCAT	2 cut(s)	2084, 2643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.