Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7983982.1

Orthogroup ID

OG0009585

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 516

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7983982.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

cccgcccggtcaaaccctcgcgatcccgaccgtcgattccttcgtcactcccggctacttctccaaatcggcgccgtcgttctccaaaaaccgacgtgtcagcatcgatttcgatccggacacatacgacccgccgtctactttctcaccgccgaatccaaagcctcagccggaggctggtatctctggatctaactattctgccgccgattgggtaccgccgcagccggagcccaaagttgaagttgctaataggtctggggttccatccaaaattgtgaagaaaaacgtcaatctgattcgaggtaatgctcctttgccgccggtgaagctcaagggcggagccgaagggaactttgtgaagctcaacctgaacggaaggaagcgcaagtttctgaacaagggcagaagaggaagtttcagttcttcaagtcgtcggaaattttaccggaaaggtaaaagaaaattgacagcgcaagatggaaatgaaggagatgaagatggcttggttacaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031668 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0042221 GO:0042623 GO:0042631 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0070887 GO:0071103 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0104004 GO:0140097 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

171

Amino Acids

18.57

Weight (kDa)

10.2

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27880 AT1G27880
fragaria_vesca	FvH4_4g24310 FvH4_4g24310
malus_domestica	MD16G1111900.v1.1
prunus_persica	Prupe.1G233100_v2.0.a1
pyrus_communis	pycom13g09790 pycom16g09490
rosa_chinensis	RchiOBHm_Chr4g0431111
rosa_laevigata	RLG00000006924
rosa_multiflora	Rmu_co7983982.1_g000001 Rmu_co8245775.1_g000001 Rmu_sc0040015.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372700
rosa_rugosa	Rorug04G0248100 Rorug04G0248200 Rorug04G0248300
rosa_samantha	Rh4AG304700 Rh4BG311900 Rh4CG328200 Rh4DG308500
rosa_wichuraiana	Rw4G026480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	215
AccB1I	GGYRCC	2 cut(s)	71, 215
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	116
AciI	CCGC	8 cut(s)	3, 132, 150, 205, 219, 222, 321, 340
AclWI	GGATC	3 cut(s)	17, 108, 197
AcsI	RAATTY	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	2 cut(s)	177, 211
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	243, 430
AhdI	GACNNNNNGTC	1 cut(s)	134
AjiI	CACGTC	1 cut(s)	96
AluBI	AGCT	2 cut(s)	332, 365
AluI	AGCT	2 cut(s)	332, 365
AlwI	GGATC	3 cut(s)	17, 108, 197
Aor13HI	TCCGGA	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	441
Asp718I	GGTACC	1 cut(s)	215
AspLEI	GCGC	3 cut(s)	74, 388, 476
AsuC2I	CCSGG	2 cut(s)	7, 52
AsuHPI	GGTGA	2 cut(s)	139, 338
BanI	GGYRCC	2 cut(s)	71, 215
BanII	GRGCYC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	3 cut(s)	275, 474, 495
BceAI	ACGGC	2 cut(s)	59, 119
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BcnI	CCSGG	2 cut(s)	7, 52
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	4 cut(s)	205, 222, 225, 321
BlsI	GCNGC	4 cut(s)	206, 223, 226, 322
Bme1390I	CCNGG	2 cut(s)	7, 52
BmeRI	GACNNNNNGTC	1 cut(s)	134
BmgBI	CACGTC	1 cut(s)	96
BmiI	GGNNCC	5 cut(s)	73, 217, 232, 265, 344
BmrFI	CCNGG	2 cut(s)	7, 52
BmsI	GCATC	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	318
BpuMI	CCSGG	2 cut(s)	7, 52
Bsa29I	ATCGAT	1 cut(s)	106
BsaBI	GATNNNNATC	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	72
BsaWI	WCCGGW	2 cut(s)	116, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 211
Bse118I	RCCGGY	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	112
BseAI	TCCGGA	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	106
BseGI	GGATG	1 cut(s)	267
BseJI	GATNNNNATC	1 cut(s)	112
BseLI	CCNNNNNNNGG	2 cut(s)	177, 211
BseMII	CTCAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	31
BshNI	GGYRCC	2 cut(s)	71, 215
BshVI	ATCGAT	1 cut(s)	106
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	7 cut(s)	7, 52, 117, 171, 228, 324, 449
BslI	CCNNNNNNNGG	2 cut(s)	177, 211
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp13I	TCCGGA	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	22, 113, 189
Bsp68I	TCGCGA	1 cut(s)	21
BspACI	CCGC	8 cut(s)	3, 132, 150, 205, 219, 222, 321, 340
BspCNI	CTCAG	1 cut(s)	179
BspDI	ATCGAT	1 cut(s)	106
BspEI	TCCGGA	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	5 cut(s)	73, 217, 232, 265, 344
BspPI	GGATC	3 cut(s)	17, 108, 197
BspT107I	GGYRCC	2 cut(s)	71, 215
BsrFI	RCCGGY	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	323
BssMI	GATC	3 cut(s)	22, 113, 189
BssNI	GRCGYC	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	404
BstACI	GRCGYC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	267
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	3 cut(s)	74, 388, 476
BstKTI	GATC	3 cut(s)	25, 116, 192
BstMBI	GATC	3 cut(s)	22, 113, 189
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 329
BstSCI	CCNGG	2 cut(s)	5, 50
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
Bsu15I	ATCGAT	1 cut(s)	106
BsuTUI	ATCGAT	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	267
BtuMI	TCGCGA	1 cut(s)	21
CfoI	GCGC	3 cut(s)	74, 388, 476
Cfr10I	RCCGGY	1 cut(s)	323
ClaI	ATCGAT	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	216
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	1 cut(s)	166
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	3 cut(s)	24, 115, 191
DpnII	GATC	3 cut(s)	22, 113, 189
DriI	GACNNNNNGTC	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	404
Eam1105I	GACNNNNNGTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	404
EciI	GGCGGA	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	235
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
FaiI	YATR	1 cut(s)	125
FauI	CCCGC	2 cut(s)	10, 139
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	205, 222, 225, 321
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	4 cut(s)	205, 222, 225, 321
GlaI	GCGC	3 cut(s)	73, 387, 475
GluI	GCNGC	4 cut(s)	205, 222, 225, 321
HaeII	RGCGCY	1 cut(s)	75
HapII	CCGG	7 cut(s)	7, 52, 117, 171, 228, 324, 449
HhaI	GCGC	3 cut(s)	74, 388, 476
Hin1I	GRCGYC	1 cut(s)	72
Hin6I	GCGC	3 cut(s)	72, 386, 474
HinP1I	GCGC	3 cut(s)	72, 386, 474
HinfI	GANTC	3 cut(s)	36, 155, 299
HpaII	CCGG	7 cut(s)	7, 52, 117, 171, 228, 324, 449
HphI	GGTGA	2 cut(s)	139, 338
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	298, 397, 439
Hpy188III	TCNNGA	4 cut(s)	20, 26, 117, 187
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	4 cut(s)	36, 80, 97, 439
HpyAV	CCTTC	4 cut(s)	50, 342, 373, 483
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	2 cut(s)	95, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 329
HpyF3I	CTNAG	1 cut(s)	166
HpySE526I	ACGT	2 cut(s)	95, 289
Hsp92I	GRCGYC	1 cut(s)	72
HspAI	GCGC	3 cut(s)	72, 386, 474
KasI	GGCGCC	1 cut(s)	71
Kpn2I	TCCGGA	1 cut(s)	116
KpnI	GGTACC	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	22, 113, 189
LmnI	GCTCC	3 cut(s)	230, 317, 342
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	1 cut(s)	112
MaeII	ACGT	2 cut(s)	95, 289
MaeIII	GTNAC	2 cut(s)	44, 509
MalI	GATC	3 cut(s)	24, 115, 191
MboI	GATC	3 cut(s)	22, 113, 189
MboII	GAAGA	4 cut(s)	293, 418, 421, 510
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	3 cut(s)	274, 441, 465
Mly113I	GGCGCC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	5 cut(s)	27, 167, 175, 297, 405
MroI	TCCGGA	1 cut(s)	116
MspI	CCGG	7 cut(s)	7, 52, 117, 171, 228, 324, 449
MspR9I	CCNGG	2 cut(s)	7, 52
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	230, 329
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	2 cut(s)	7, 52
NdeII	GATC	3 cut(s)	22, 113, 189
NlaIV	GGNNCC	5 cut(s)	73, 217, 232, 265, 344
NmuCI	GTSAC	1 cut(s)	44
NruI	TCGCGA	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	2 cut(s)	40, 75
PfeI	GAWTC	3 cut(s)	36, 155, 299
PkrI	GCNGC	4 cut(s)	206, 223, 226, 322
PluTI	GGCGCC	1 cut(s)	75
PspN4I	GGNNCC	5 cut(s)	73, 217, 232, 265, 344
PsuI	RGATCY	1 cut(s)	189
RruI	TCGCGA	1 cut(s)	21
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SatI	GCNGC	4 cut(s)	205, 222, 225, 321
Sau3AI	GATC	3 cut(s)	22, 113, 189
ScrFI	CCNGG	2 cut(s)	7, 52
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	8 cut(s)	98, 258, 292, 308, 334, 367, 373, 458
SfaNI	GCATC	1 cut(s)	112
SfoI	GGCGCC	1 cut(s)	73
SgrAI	CRCCGGYG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	3 cut(s)	274, 441, 465
SsiI	CCGC	8 cut(s)	3, 132, 150, 205, 219, 222, 321, 340
SspDI	GGCGCC	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	5, 50
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	2 cut(s)	98, 292
TaqI	TCGA	4 cut(s)	34, 106, 112, 302
TasI	AATT	3 cut(s)	274, 441, 465
TauI	GCSGC	3 cut(s)	207, 224, 323
TfiI	GAWTC	3 cut(s)	36, 155, 299
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	502, 511
TspGWI	ACGGA	1 cut(s)	391
XapI	RAATTY	1 cut(s)	441
XmiI	GTMKAC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.